Strain Fitness in Sphingobium sp. HT1-2 around GFF5308

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,298,425	+		GFF5307	0.37	+1.1
5,298,451	+		GFF5307	0.39	-1.0
5,298,454	-		GFF5307	0.39	-0.4
5,298,455	-		GFF5307	0.39	-0.5
5,298,468	+		GFF5307	0.40	-1.2
5,298,474	+		GFF5307	0.41	-0.3
5,298,479	+		GFF5307	0.41	-0.9
5,298,479	+		GFF5307	0.41	+0.8
5,298,482	-		GFF5307	0.41	-0.3
5,298,487	-		GFF5307	0.42	-2.5
5,298,491	+		GFF5307	0.42	-0.0
5,298,494	+		GFF5307	0.42	-0.3
5,298,494	+		GFF5307	0.42	-0.9
5,298,501	+		GFF5307	0.43	+0.9
5,298,507	+		GFF5307	0.43	+0.4
5,298,509	-		GFF5307	0.44	-0.4
5,298,515	-		GFF5307	0.44	-0.2
5,298,515	-		GFF5307	0.44	-1.0
5,298,526	+		GFF5307	0.45	-0.4
5,298,527	-		GFF5307	0.45	+0.3
5,298,596	+		GFF5307	0.50	-1.5
5,298,596	+		GFF5307	0.50	-1.7
5,298,596	+		GFF5307	0.50	-0.4
5,298,597	-		GFF5307	0.50	+0.2
5,298,604	-		GFF5307	0.51	-1.3
5,298,604	-		GFF5307	0.51	-1.1
5,298,604	-		GFF5307	0.51	-0.5
5,298,604	-		GFF5307	0.51	-0.3
5,298,606	+		GFF5307	0.51	-1.4
5,298,606	+		GFF5307	0.51	+0.7
5,298,606	+		GFF5307	0.51	-0.0
5,298,612	+		GFF5307	0.51	-1.9
5,298,612	+		GFF5307	0.51	-2.8
5,298,612	+		GFF5307	0.51	-1.1
5,298,614	-		GFF5307	0.52	+0.8
5,298,614	-		GFF5307	0.52	-0.2
5,298,637	-		GFF5307	0.53	-0.8
5,298,638	+		GFF5307	0.53	+1.1
5,298,646	-		GFF5307	0.54	+0.7
5,298,677	+		GFF5307	0.56	-1.2
5,298,685	-		GFF5307	0.57	+1.1
5,298,692	-		GFF5307	0.58	+1.0
5,298,747	+		GFF5307	0.62	+0.1
5,298,768	-		GFF5307	0.63	-0.6
5,298,794	+		GFF5307	0.65	+0.4
5,298,827	-		GFF5307	0.68	-0.0
5,298,841	+		GFF5307	0.69	-0.5
5,298,850	-		GFF5307	0.70	-0.2
5,298,851	-		GFF5307	0.70	-0.2
5,298,865	+		GFF5307	0.71	-0.6
5,298,897	+		GFF5307	0.73	+1.0
5,298,897	+		GFF5307	0.73	-2.1
5,298,897	+		GFF5307	0.73	-0.4
5,298,897	+		GFF5307	0.73	-0.9
5,298,897	+		GFF5307	0.73	-0.5
5,298,897	+		GFF5307	0.73	+0.8
5,298,898	+		GFF5307	0.73	+0.8
5,298,900	-		GFF5307	0.73	+0.0
5,298,900	-		GFF5307	0.73	+1.2
5,298,900	-		GFF5307	0.73	+0.8
5,298,902	+		GFF5307	0.74	-1.1
5,298,905	+		GFF5307	0.74	+1.3
5,298,905	-		GFF5307	0.74	-0.3
5,298,905	-		GFF5307	0.74	+0.1
5,298,905	-		GFF5307	0.74	-0.1
5,298,905	-		GFF5307	0.74	+0.4
5,298,905	-		GFF5307	0.74	-0.7
5,298,905	-		GFF5307	0.74	-1.2
5,298,905	-		GFF5307	0.74	-0.6
5,298,905	-		GFF5307	0.74	-2.2
5,298,905	-		GFF5307	0.74	-1.0
5,298,905	-		GFF5307	0.74	-0.4
5,298,905	-		GFF5307	0.74	-0.0
5,298,906	-		GFF5307	0.74	-0.0
5,298,907	+		GFF5307	0.74	-0.9
5,298,907	+		GFF5307	0.74	+1.3
5,298,907	+		GFF5307	0.74	+0.6
5,298,907	+		GFF5307	0.74	-2.0
5,298,935	+		GFF5307	0.76	-0.9
5,298,963	+		GFF5307	0.78	+0.4
5,298,981	-		GFF5307	0.80	+0.1
5,299,000	-		GFF5307	0.81	-0.4
5,299,005	-		GFF5307	0.82	+0.5
5,299,005	-		GFF5307	0.82	-2.4
5,299,005	-		GFF5307	0.82	+0.8
5,299,005	-		GFF5307	0.82	+1.4
5,299,014	+		GFF5307	0.82	-3.3
5,299,014	+		GFF5307	0.82	+0.1
5,299,014	+		GFF5307	0.82	-1.5
5,299,014	+		GFF5307	0.82	-0.9
5,299,014	+		GFF5307	0.82	-0.8
5,299,014	+		GFF5307	0.82	-1.1
5,299,014	+		GFF5307	0.82	-1.6
5,299,014	+		GFF5307	0.82	-0.0
5,299,020	-		GFF5307	0.83	-1.4
5,299,022	-		GFF5307	0.83	-0.1
5,299,022	-		GFF5307	0.83	-0.4
5,299,022	-		GFF5307	0.83	-2.3
5,299,022	-		GFF5307	0.83	+1.1
5,299,022	-		GFF5307	0.83	+0.7
5,299,022	-		GFF5307	0.83	+1.0
5,299,065	+		GFF5307	0.86	-1.0
5,299,068	-		GFF5307	0.86	-2.2
5,299,072	+		GFF5307	0.87	-1.3
5,299,073	-		GFF5307	0.87	-1.5
5,299,073	-		GFF5307	0.87	-0.2
5,299,073	-		GFF5307	0.87	-1.0
5,299,075	-		GFF5307	0.87	-0.3
5,299,077	+		GFF5307	0.87	-2.0
5,299,077	+		GFF5307	0.87	+0.1
5,299,077	+		GFF5307	0.87	-0.3
5,299,077	+		GFF5307	0.87	-2.0
5,299,080	-		GFF5307	0.87	+0.9
5,299,085	-		GFF5307	0.88	+0.1
5,299,085	-		GFF5307	0.88	+0.4
5,299,085	-		GFF5307	0.88	-1.1
5,299,110	-		GFF5307	0.90	+0.5
5,299,121	+				-1.9
5,299,121	+				+0.5
5,299,121	+				-1.3
5,299,121	+				-1.9
5,299,129	-				-0.4
5,299,129	-				+0.1
5,299,129	-				-0.4
5,299,129	-				-1.2
5,299,129	-				-0.7
5,299,131	+				-0.6
5,299,131	+				+1.3
5,299,131	+				-1.2
5,299,131	+				-1.0
5,299,131	+				-1.3
5,299,131	+				-1.9
5,299,131	+				-0.9
5,299,131	+				-1.8
5,299,139	-				-0.8
5,299,139	-				-2.7
5,299,139	-				+2.0
5,299,139	-				-0.3
5,299,139	-				+0.1
5,299,139	-				-0.1
5,299,192	+				-0.8
5,299,192	+				+0.5
5,299,192	+				-0.3
5,299,192	+				+2.1
5,299,192	+				-1.0
5,299,192	+				-2.3
5,299,192	+				-0.1
5,299,192	-				-0.0
5,299,200	-				-0.7
5,299,200	-				-0.1
5,299,219	+				+0.5
5,299,227	-				-1.6
5,299,236	+				-0.8
5,299,239	+				+1.2
5,299,240	+				+1.2
5,299,240	+				-1.4
5,299,242	-				-1.0
5,299,256	+				+0.9
5,299,256	+				-0.0
5,299,264	-				+0.9
5,299,267	-				-1.0
5,299,586	+				+0.1
5,299,607	+				+0.4
5,299,656	-				+0.5
5,299,737	+				+0.4
5,299,737	+				-0.8
5,299,737	+				-0.3
5,299,737	+				-1.8
5,299,737	+				-1.1
5,299,737	+				+0.9
5,299,737	+				-0.3
5,299,737	+				-0.3
5,299,737	+				+0.6
5,299,737	+				-1.8
5,299,737	+				+1.5
5,299,745	-				+0.2
5,299,745	-				+0.4
5,299,745	-				-0.3
5,299,745	-				+0.7
5,299,745	-				-1.6
5,299,745	-				-1.2
5,299,745	-				-0.3
5,299,745	-				-0.6
5,299,789	+				-0.6
5,299,789	+				-2.7
5,299,789	+				+0.6
5,299,794	+				-1.0
5,299,797	-				-0.3
5,299,799	+				-0.4
5,299,799	+				+0.1
5,299,799	+				+1.3
5,299,799	+				+1.2
5,299,799	+				-0.7
5,299,799	+				-0.8
5,299,799	+				+1.3
5,299,807	-				-0.5
5,299,878	+				-0.4
5,299,894	+				+0.0
5,299,911	-				+0.1
5,299,913	+				+0.6
5,299,913	+				+0.2
5,299,913	+				+1.6
5,299,919	+				+0.4
5,299,921	-				-0.9
5,299,921	-				-0.2
5,299,921	-				+0.5
5,299,927	-				-1.6
5,299,927	-				+0.4
5,299,948	-				+0.5
5,299,976	+				-1.7
5,299,984	-				+0.8
5,299,984	-				-0.2
5,299,986	+				-1.2
5,299,986	+				+1.2
5,299,986	+				-0.5
5,299,986	+				+0.5
5,299,986	+				-0.2
5,299,986	+				+0.3
5,299,986	+				-0.5
5,299,986	+				+0.2
5,299,986	+				-0.0
5,299,989	-				+0.6
5,299,989	-				-1.6
5,299,994	-				-1.8
5,299,994	-				+0.2
5,299,994	-				+0.3
5,299,994	-				-2.4
5,299,996	+				-0.0
5,299,996	+				-0.7
5,299,996	+				+1.3
5,300,004	-		GFF5310	0.10	+1.6
5,300,004	-		GFF5310	0.10	-2.5
5,300,004	-		GFF5310	0.10	-1.7
5,300,004	-		GFF5310	0.10	-0.1
5,300,005	-		GFF5310	0.10	+0.2
5,300,015	-		GFF5310	0.11	-0.0
5,300,019	+		GFF5310	0.11	+1.0
5,300,025	-		GFF5310	0.11	-0.5
5,300,027	+		GFF5310	0.11	+0.5
5,300,035	-		GFF5310	0.11	-0.3
5,300,040	+		GFF5310	0.12	-0.8
5,300,048	-		GFF5310	0.12	+0.1
5,300,048	-		GFF5310	0.12	-2.3
5,300,048	-		GFF5310	0.12	-1.5
5,300,065	+		GFF5310	0.13	-0.5
5,300,086	+		GFF5310	0.13	+0.4
5,300,087	-		GFF5310	0.13	-0.1
5,300,098	+		GFF5310	0.14	+0.3
5,300,099	+		GFF5310	0.14	-1.8
5,300,104	+		GFF5310	0.14	-0.3
5,300,104	+		GFF5310	0.14	-1.3
5,300,104	+		GFF5310	0.14	+1.4
5,300,105	-		GFF5310	0.14	-0.1
5,300,105	-		GFF5310	0.14	-0.0
5,300,105	-		GFF5310	0.14	-0.9
5,300,107	-		GFF5310	0.14	-2.5
5,300,112	-		GFF5310	0.14	+0.3
5,300,112	-		GFF5310	0.14	+1.3
5,300,112	-		GFF5310	0.14	+1.0
5,300,112	-		GFF5310	0.14	-0.7
5,300,128	+		GFF5310	0.15	+0.3
5,300,133	+		GFF5310	0.15	+0.5
5,300,136	-		GFF5310	0.15	-2.0
5,300,154	+		GFF5310	0.16	-0.7
5,300,164	-		GFF5310	0.17	+0.1
5,300,166	+		GFF5310	0.17	-0.3
5,300,206	-		GFF5310	0.18	-0.8
5,300,208	-		GFF5310	0.18	-0.2
5,300,216	+		GFF5310	0.19	-0.3
5,300,221	+		GFF5310	0.19	-0.2
5,300,221	+		GFF5310	0.19	+0.3
5,300,221	+		GFF5310	0.19	+0.9
5,300,229	-		GFF5310	0.19	+0.8
5,300,229	-		GFF5310	0.19	-1.2
5,300,233	+		GFF5310	0.19	+0.6
5,300,297	+		GFF5310	0.22	+1.5
5,300,302	+		GFF5310	0.22	+0.8
5,300,310	-		GFF5310	0.23	+0.6
5,300,358	-		GFF5310	0.25	-0.2
5,300,393	+		GFF5310	0.26	+0.9
5,300,406	-		GFF5310	0.26	-1.7
5,300,406	-		GFF5310	0.26	+1.3
5,300,445	+		GFF5310	0.28	+0.9
5,300,445	-		GFF5310	0.28	-1.0
5,300,448	-		GFF5310	0.28	+0.0
5,300,460	+		GFF5310	0.29	-0.2
5,300,460	+		GFF5310	0.29	+0.6