Strain Fitness in Sphingobium sp. HT1-2 around GFF3782

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,823,089	+		GFF3781	0.26	-1.6
3,823,092	+		GFF3781	0.27	-1.5
3,823,092	+		GFF3781	0.27	-0.4
3,823,098	+		GFF3781	0.27	-0.1
3,823,100	-		GFF3781	0.27	-1.1
3,823,100	-		GFF3781	0.27	-0.5
3,823,100	-		GFF3781	0.27	-1.1
3,823,106	-		GFF3781	0.28	+0.8
3,823,116	-		GFF3781	0.29	+0.9
3,823,178	-		GFF3781	0.34	-2.1
3,823,185	+		GFF3781	0.35	-0.4
3,823,185	+		GFF3781	0.35	-2.6
3,823,185	+		GFF3781	0.35	-1.3
3,823,185	+		GFF3781	0.35	-1.6
3,823,185	+		GFF3781	0.35	+0.5
3,823,185	+		GFF3781	0.35	-1.2
3,823,185	+		GFF3781	0.35	+0.4
3,823,185	+		GFF3781	0.35	-0.3
3,823,185	+		GFF3781	0.35	+0.1
3,823,185	+		GFF3781	0.35	-2.3
3,823,193	-		GFF3781	0.36	-0.1
3,823,193	-		GFF3781	0.36	+0.6
3,823,193	-		GFF3781	0.36	-0.0
3,823,193	-		GFF3781	0.36	+0.5
3,823,193	-		GFF3781	0.36	-0.2
3,823,193	-		GFF3781	0.36	+0.5
3,823,193	-		GFF3781	0.36	-0.3
3,823,193	-		GFF3781	0.36	-0.1
3,823,193	-		GFF3781	0.36	-1.2
3,823,193	-		GFF3781	0.36	+0.1
3,823,198	-		GFF3781	0.36	+1.5
3,823,198	-		GFF3781	0.36	+0.0
3,823,230	+		GFF3781	0.39	+0.5
3,823,238	-		GFF3781	0.39	-1.6
3,823,238	-		GFF3781	0.39	-0.8
3,823,246	+		GFF3781	0.40	-0.4
3,823,247	+		GFF3781	0.40	-1.3
3,823,254	-		GFF3781	0.41	-0.4
3,823,255	-		GFF3781	0.41	-0.5
3,823,279	-		GFF3781	0.43	-0.5
3,823,291	-		GFF3781	0.44	+0.1
3,823,293	+		GFF3781	0.44	+0.8
3,823,318	+		GFF3781	0.46	+0.6
3,823,347	-		GFF3781	0.49	+1.2
3,823,358	+		GFF3781	0.50	-1.6
3,823,365	+		GFF3781	0.50	-1.8
3,823,366	-		GFF3781	0.51	-0.5
3,823,366	-		GFF3781	0.51	-1.0
3,823,393	+		GFF3781	0.53	-1.6
3,823,397	-		GFF3781	0.53	+0.2
3,823,401	-		GFF3781	0.54	-0.0
3,823,414	+		GFF3781	0.55	+0.2
3,823,422	-		GFF3781	0.55	+0.1
3,823,422	-		GFF3781	0.55	+1.2
3,823,422	-		GFF3781	0.55	-1.1
3,823,425	+		GFF3781	0.56	-1.0
3,823,428	+		GFF3781	0.56	-0.9
3,823,437	-		GFF3781	0.57	+0.4
3,823,446	-		GFF3781	0.58	+1.5
3,823,448	+		GFF3781	0.58	-1.7
3,823,448	+		GFF3781	0.58	-0.4
3,823,456	-		GFF3781	0.58	-0.2
3,823,469	+		GFF3781	0.60	+0.4
3,823,476	-		GFF3781	0.60	-0.4
3,823,478	+		GFF3781	0.60	+1.2
3,823,478	+		GFF3781	0.60	-0.0
3,823,486	-		GFF3781	0.61	-0.8
3,823,496	-		GFF3781	0.62	+0.6
3,823,548	-		GFF3781	0.66	-0.0
3,823,551	+		GFF3781	0.67	-1.0
3,823,568	-		GFF3781	0.68	-0.4
3,823,597	-		GFF3781	0.71	+0.2
3,823,597	-		GFF3781	0.71	+1.4
3,823,611	-		GFF3781	0.72	+0.4
3,823,617	+		GFF3781	0.72	-0.2
3,823,617	+		GFF3781	0.72	-0.2
3,823,620	-		GFF3781	0.73	-0.7
3,823,625	-		GFF3781	0.73	-0.1
3,823,625	-		GFF3781	0.73	+1.6
3,823,625	-		GFF3781	0.73	+1.2
3,823,626	+		GFF3781	0.73	+1.2
3,823,634	-		GFF3781	0.74	+1.1
3,823,634	-		GFF3781	0.74	-0.5
3,823,634	-		GFF3781	0.74	-0.5
3,823,650	-		GFF3781	0.75	+0.2
3,823,655	-		GFF3781	0.76	+0.6
3,823,655	-		GFF3781	0.76	+0.5
3,823,689	+		GFF3781	0.79	-1.8
3,823,689	+		GFF3781	0.79	-1.4
3,823,689	+		GFF3781	0.79	-0.7
3,823,697	-		GFF3781	0.79	-0.1
3,823,697	-		GFF3781	0.79	+0.4
3,823,697	-		GFF3781	0.79	+0.0
3,823,699	+		GFF3781	0.80	+0.2
3,823,704	+		GFF3781	0.80	+0.2
3,823,704	+		GFF3781	0.80	-1.0
3,823,704	+		GFF3781	0.80	-0.7
3,823,712	-		GFF3781	0.81	-0.3
3,823,712	-		GFF3781	0.81	-2.3
3,823,712	-		GFF3781	0.81	-0.1
3,823,712	-		GFF3781	0.81	-0.7
3,823,712	-		GFF3781	0.81	+0.2
3,823,722	-		GFF3781	0.82	-1.2
3,823,722	-		GFF3781	0.82	-0.4
3,823,723	+		GFF3781	0.82	-0.7
3,823,723	+		GFF3781	0.82	-2.0
3,823,723	+		GFF3781	0.82	-0.8
3,823,731	-		GFF3781	0.82	-1.4
3,823,731	-		GFF3781	0.82	+1.7
3,823,739	-		GFF3781	0.83	-1.2
3,823,739	-		GFF3781	0.83	-0.0
3,823,749	-		GFF3781	0.84	+0.2
3,823,749	-		GFF3781	0.84	-2.2
3,823,770	+		GFF3781	0.86	+0.7
3,823,771	+		GFF3781	0.86	-1.0
3,823,771	+		GFF3781	0.86	+0.8
3,823,776	+		GFF3781	0.86	+0.9
3,823,779	-		GFF3781	0.87	-1.9
3,823,779	-		GFF3781	0.87	-1.7
3,823,782	+		GFF3781	0.87	+1.0
3,823,784	-		GFF3781	0.87	+0.9
3,823,785	-		GFF3781	0.87	+0.5
3,823,787	+		GFF3781	0.87	-0.4
3,823,787	+		GFF3781	0.87	-1.7
3,823,787	+		GFF3781	0.87	+0.7
3,823,787	+		GFF3781	0.87	-1.9
3,823,787	+		GFF3781	0.87	+0.4
3,823,787	+		GFF3781	0.87	-0.2
3,823,795	-		GFF3781	0.88	+0.3
3,823,795	-		GFF3781	0.88	+0.4
3,823,795	-		GFF3781	0.88	+0.1
3,823,797	+		GFF3781	0.88	+1.7
3,823,827	+				+0.5
3,823,827	+				-0.8
3,823,832	+				+1.1
3,823,832	+				+0.2
3,823,832	+				-0.4
3,823,835	-				-0.8
3,823,835	-				+0.4
3,823,835	-				-1.6
3,823,835	-				-1.2
3,823,835	-				-0.7
3,823,835	-				-0.2
3,823,835	-				-0.8
3,823,835	-				+0.2
3,823,835	-				+0.7
3,823,840	-				-1.2
3,823,840	-				-1.7
3,823,840	-				-1.3
3,823,840	-				-1.5
3,823,842	-				+0.4
3,823,853	-				-1.6
3,823,879	-				-1.5
3,823,921	+				-0.7
3,823,921	+				+0.7
3,823,921	+				+0.4
3,823,929	-				-1.3
3,823,929	-				+0.5
3,823,940	+				-1.4
3,823,947	+				-1.2
3,823,947	+				-1.4
3,823,955	-				-0.4
3,823,955	-				+0.6
3,823,956	+				-0.8
3,823,956	+				-1.2
3,823,962	-				+0.3
3,823,984	+				+0.1
3,823,991	-				+0.5
3,823,997	-				+0.6
3,824,020	-				-1.2
3,824,022	-				-0.9
3,824,033	+				-1.3
3,824,033	+				-2.9
3,824,036	-				-0.4
3,824,036	-				-1.1
3,824,038	+				-1.0
3,824,038	+				-1.0
3,824,038	+				-1.1
3,824,046	-				+1.4
3,824,054	-				-1.3
3,824,056	-				-0.5
3,824,059	+				+0.0
3,824,059	-				+0.5
3,824,067	-				-1.3
3,824,067	-				-0.3
3,824,075	+				-0.1
3,824,083	-				+0.2
3,824,101	-				-0.7
3,824,101	-				-0.5
3,824,101	-				-1.5
3,824,121	+				-0.9
3,824,121	+				-0.4
3,824,121	+				-0.9
3,824,121	+				-0.7
3,824,124	-				-0.3
3,824,124	-				-0.2
3,824,129	-				-0.3
3,824,129	-				+0.6
3,824,129	-				-1.3
3,824,129	-				+0.4
3,824,129	-				+0.5
3,824,134	+				-0.7
3,824,153	+				-1.9
3,824,192	+		GFF3782	0.12	-0.3
3,824,192	+		GFF3782	0.12	-2.3
3,824,198	+		GFF3782	0.13	-0.5
3,824,206	+		GFF3782	0.14	+0.6
3,824,206	-		GFF3782	0.14	-1.1
3,824,206	-		GFF3782	0.14	-0.7
3,824,206	-		GFF3782	0.14	-1.9
3,824,206	-		GFF3782	0.14	-0.2
3,824,219	+		GFF3782	0.15	-0.3
3,824,219	+		GFF3782	0.15	+0.8
3,824,219	+		GFF3782	0.15	-2.4
3,824,230	+		GFF3782	0.17	-0.2
3,824,238	-		GFF3782	0.18	-0.3
3,824,245	-		GFF3782	0.19	+1.0
3,824,286	+		GFF3782	0.23	-1.1
3,824,286	+		GFF3782	0.23	-1.2
3,824,319	-		GFF3782	0.27	+0.8
3,824,324	+		GFF3782	0.28	+0.1
3,824,325	-		GFF3782	0.28	-0.6
3,824,341	+		GFF3782	0.30	-0.5
3,824,350	+		GFF3782	0.31	-0.9
3,824,360	+		GFF3782	0.32	-1.2
3,824,376	-		GFF3782	0.34	-0.1
3,824,413	+		GFF3782	0.38	-0.3
3,824,431	+		GFF3782	0.41	+0.0
3,824,448	+		GFF3782	0.43	-0.0
3,824,460	+		GFF3782	0.44	+0.1
3,824,475	-		GFF3782	0.46	+0.5
3,824,476	-		GFF3782	0.46	+1.1
3,824,476	-		GFF3782	0.46	-0.4
3,824,483	-		GFF3782	0.47	-1.0
3,824,484	-		GFF3782	0.47	+0.3
3,824,492	+		GFF3782	0.48	+0.8
3,824,513	-		GFF3782	0.50	+1.3
3,824,567	-		GFF3782	0.57	+0.9
3,824,613	+		GFF3782	0.62	+0.6
3,824,621	-		GFF3782	0.63	+0.6
3,824,621	-		GFF3782	0.63	-1.4
3,824,621	-		GFF3782	0.63	-1.9
3,824,622	+		GFF3782	0.63	+0.7
3,824,631	-		GFF3782	0.64	-0.0
3,824,640	+		GFF3782	0.65	-0.1
3,824,648	-		GFF3782	0.66	-2.3
3,824,648	-		GFF3782	0.66	+0.1
3,824,655	+		GFF3782	0.67	-0.2
3,824,663	+		GFF3782	0.68	+0.5
3,824,663	+		GFF3782	0.68	+0.7
3,824,663	+		GFF3782	0.68	-0.2
3,824,663	+		GFF3782	0.68	+1.3
3,824,663	+		GFF3782	0.68	-0.3
3,824,671	-		GFF3782	0.69	-0.5
3,824,671	-		GFF3782	0.69	-0.6
3,824,671	-		GFF3782	0.69	-1.5
3,824,673	+		GFF3782	0.69	-0.4
3,824,673	+		GFF3782	0.69	-0.6
3,824,681	-		GFF3782	0.70	-2.2
3,824,688	+		GFF3782	0.71	-0.5
3,824,688	-		GFF3782	0.71	+0.4
3,824,697	+		GFF3782	0.72	+1.3
3,824,697	+		GFF3782	0.72	+0.6
3,824,697	+		GFF3782	0.72	-1.4
3,824,697	+		GFF3782	0.72	-0.6
3,824,700	-		GFF3782	0.72	-0.7
3,824,702	+		GFF3782	0.73	+0.3
3,824,702	+		GFF3782	0.73	-0.6
3,824,705	-		GFF3782	0.73	-0.0
3,824,705	-		GFF3782	0.73	+0.2
3,824,705	-		GFF3782	0.73	+0.5
3,824,705	-		GFF3782	0.73	+1.3
3,824,721	+		GFF3782	0.75	+0.9
3,824,745	-		GFF3782	0.78	+0.8
3,824,751	+		GFF3782	0.79	-1.3
3,824,751	+		GFF3782	0.79	-0.5
3,824,751	+		GFF3782	0.79	+0.7
3,824,759	-		GFF3782	0.79	-0.4
3,824,759	-		GFF3782	0.79	+0.7
3,824,759	-		GFF3782	0.79	-0.8
3,824,759	-		GFF3782	0.79	-0.2
3,824,759	-		GFF3782	0.79	-0.1
3,824,759	-		GFF3782	0.79	+0.2
3,824,759	-		GFF3782	0.79	-0.3
3,824,765	+		GFF3782	0.80	-1.0
3,824,770	+		GFF3782	0.81	-2.6
3,824,770	+		GFF3782	0.81	+1.5
3,824,770	+		GFF3782	0.81	-1.4
3,824,770	+		GFF3782	0.81	-0.1
3,824,770	+		GFF3782	0.81	+0.8
3,824,770	+		GFF3782	0.81	+0.9
3,824,778	-		GFF3782	0.82	+0.2
3,824,778	-		GFF3782	0.82	+0.3
3,824,778	-		GFF3782	0.82	-0.8
3,824,785	+		GFF3782	0.83	+0.1
3,824,785	+		GFF3782	0.83	-0.7
3,824,788	-		GFF3782	0.83	-0.7
3,824,793	-		GFF3782	0.84	+0.1
3,824,802	+		GFF3782	0.85	-1.0
3,824,829	-		GFF3782	0.88	-0.4
3,824,869	-				+0.5
3,824,874	-				-0.4
3,824,892	+				-0.1
3,824,895	-				-1.4
3,824,899	-				+0.4
3,824,905	-				+1.3
3,824,924	-				+0.6
3,824,949	+				+0.8
3,824,967	-				-1.8
3,825,000	-				+0.3
3,825,006	+				+0.6
3,825,006	+				-1.4
3,825,008	+				-0.2
3,825,011	-				+0.9
3,825,016	-				-0.2
3,825,016	-				-0.7
3,825,100	+				-0.8
3,825,108	+				-0.1
3,825,111	-				-0.6
3,825,111	-				-0.8
3,825,111	-				-1.2
3,825,113	+				-1.5
3,825,132	+				+1.6
3,825,145	-				-1.9
3,825,171	-				+1.3
3,825,171	-				-0.1
3,825,190	-				+0.1
3,825,191	+				-1.0
3,825,232	+		GFF3783	0.11	-1.2
3,825,240	-		GFF3783	0.12	+0.4
3,825,250	+		GFF3783	0.12	+0.5
3,825,250	+		GFF3783	0.12	-1.6
3,825,253	-		GFF3783	0.13	+0.5
3,825,273	-		GFF3783	0.14	-1.4
3,825,275	+		GFF3783	0.14	-0.8
3,825,282	+		GFF3783	0.14	-1.4
3,825,283	-		GFF3783	0.15	+0.2
3,825,306	-		GFF3783	0.16	-1.6
3,825,343	+		GFF3783	0.18	+0.9
3,825,351	-		GFF3783	0.19	-0.5
3,825,388	+		GFF3783	0.21	-1.7
3,825,393	+		GFF3783	0.21	-1.4
3,825,413	+		GFF3783	0.23	-1.1
3,825,479	+		GFF3783	0.27	-1.6
3,825,494	+		GFF3783	0.28	-0.5
3,825,502	-		GFF3783	0.28	-1.2
3,825,541	+		GFF3783	0.30	-1.2
3,825,543	-		GFF3783	0.31	-2.3
3,825,546	+		GFF3783	0.31	-1.1
3,825,577	-		GFF3783	0.33	-1.2
3,825,592	+		GFF3783	0.34	-2.7
3,825,592	+		GFF3783	0.34	-1.7
3,825,592	+		GFF3783	0.34	-0.5
3,825,592	+		GFF3783	0.34	-1.6
3,825,599	-		GFF3783	0.34	-0.8
3,825,600	-		GFF3783	0.34	-0.2
3,825,600	-		GFF3783	0.34	-1.8
3,825,600	-		GFF3783	0.34	-0.2
3,825,600	-		GFF3783	0.34	-1.2
3,825,600	-		GFF3783	0.34	-2.6
3,825,600	-		GFF3783	0.34	-0.1
3,825,600	-		GFF3783	0.34	-1.2
3,825,600	-		GFF3783	0.34	-0.9
3,825,600	-		GFF3783	0.34	-1.3
3,825,600	-		GFF3783	0.34	-1.2
3,825,600	-		GFF3783	0.34	-0.2
3,825,602	+		GFF3783	0.34	-0.7
3,825,626	+		GFF3783	0.36	-1.3
3,825,667	-		GFF3783	0.38	-0.8
3,825,668	-		GFF3783	0.38	-1.5
3,825,724	+		GFF3783	0.42	-0.7
3,825,727	-		GFF3783	0.42	-0.4
3,825,728	+		GFF3783	0.42	+0.5
3,825,728	+		GFF3783	0.42	-1.7
3,825,776	-		GFF3783	0.45	+0.5
3,825,778	-		GFF3783	0.45	-1.0