Strain Fitness in Sphingobium sp. HT1-2 around GFF3447

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,485,636	+		GFF3445	0.38	+0.1
3,485,656	-		GFF3445	0.39	-0.2
3,485,682	+		GFF3445	0.42	+1.5
3,485,687	-		GFF3445	0.42	-0.3
3,485,687	-		GFF3445	0.42	+1.0
3,485,716	+		GFF3445	0.45	+0.0
3,485,761	+		GFF3445	0.49	-0.9
3,485,768	+		GFF3445	0.49	+0.0
3,485,773	+		GFF3445	0.50	+0.3
3,485,773	+		GFF3445	0.50	-0.1
3,485,773	+		GFF3445	0.50	-0.5
3,485,773	+		GFF3445	0.50	+0.4
3,485,781	-		GFF3445	0.50	+2.0
3,485,783	+		GFF3445	0.50	+1.1
3,485,791	-		GFF3445	0.51	+0.8
3,485,797	-		GFF3445	0.52	-1.2
3,485,797	-		GFF3445	0.52	+0.3
3,485,807	+		GFF3445	0.53	+0.3
3,485,888	+		GFF3445	0.60	+1.3
3,485,894	+		GFF3445	0.60	+0.9
3,485,929	+		GFF3445	0.63	+0.3
3,485,941	+		GFF3445	0.64	+1.0
3,485,941	+		GFF3445	0.64	-0.3
3,485,949	-		GFF3445	0.65	-0.7
3,485,949	-		GFF3445	0.65	-0.5
3,485,952	+		GFF3445	0.65	+0.1
3,485,952	+		GFF3445	0.65	-1.6
3,485,957	+		GFF3445	0.66	+0.6
3,485,957	+		GFF3445	0.66	+0.2
3,485,960	-		GFF3445	0.66	+0.0
3,485,960	-		GFF3445	0.66	+0.6
3,485,960	-		GFF3445	0.66	-0.0
3,485,965	-		GFF3445	0.66	-0.9
3,485,965	-		GFF3445	0.66	+0.5
3,485,970	-		GFF3445	0.67	+0.2
3,485,979	-		GFF3445	0.68	-0.2
3,485,981	-		GFF3445	0.68	-0.0
3,485,983	+		GFF3445	0.68	-1.2
3,485,988	+		GFF3445	0.69	+0.3
3,485,991	-		GFF3445	0.69	-2.8
3,485,991	-		GFF3445	0.69	-0.7
3,485,991	-		GFF3445	0.69	+0.8
3,485,991	-		GFF3445	0.69	+0.0
3,485,991	-		GFF3445	0.69	-0.3
3,485,993	+		GFF3445	0.69	+0.5
3,485,996	-		GFF3445	0.69	+0.9
3,485,997	+		GFF3445	0.69	-0.2
3,486,005	-		GFF3445	0.70	-0.8
3,486,005	-		GFF3445	0.70	+0.6
3,486,064	+		GFF3445	0.75	+0.7
3,486,065	-		GFF3445	0.75	+1.6
3,486,065	-		GFF3445	0.75	-0.9
3,486,065	-		GFF3445	0.75	-1.4
3,486,104	+		GFF3445	0.79	+0.7
3,486,112	-		GFF3445	0.79	+0.4
3,486,112	-		GFF3445	0.79	+0.2
3,486,112	-		GFF3445	0.79	-1.5
3,486,116	+		GFF3445	0.80	-1.8
3,486,126	+		GFF3445	0.81	-0.4
3,486,127	-		GFF3445	0.81	-2.4
3,486,132	+		GFF3445	0.81	-1.6
3,486,153	+		GFF3445	0.83	+0.2
3,486,153	+		GFF3445	0.83	-0.1
3,486,174	+		GFF3445	0.85	-0.2
3,486,202	+		GFF3445	0.87	-1.8
3,486,202	+		GFF3445	0.87	-1.0
3,486,202	+		GFF3445	0.87	-2.2
3,486,210	-		GFF3445	0.88	+1.1
3,486,224	+		GFF3445	0.89	-0.1
3,486,229	+		GFF3445	0.90	-1.8
3,486,229	+		GFF3445	0.90	+1.3
3,486,229	+		GFF3445	0.90	+0.4
3,486,232	-				-0.5
3,486,232	-				+0.2
3,486,237	-				-0.1
3,486,253	+				-0.2
3,486,253	+				+1.0
3,486,271	+				+1.1
3,486,273	+				+0.5
3,486,279	-				-1.6
3,486,279	-				-1.3
3,486,281	-				-0.9
3,486,333	+				+1.4
3,486,338	+				+0.1
3,486,338	+				-0.5
3,486,341	-				+0.2
3,486,346	-				-0.4
3,486,346	-				-0.4
3,486,346	-				-0.4
3,486,350	+				-0.9
3,486,401	-				-0.1
3,486,430	+				+0.5
3,486,430	+				-1.5
3,486,430	+				-1.8
3,486,431	-				+0.6
3,486,438	-				+0.2
3,486,438	-				+0.9
3,486,438	-				+0.0
3,486,453	+				-0.9
3,486,457	-				-0.2
3,486,462	-				+0.8
3,486,480	+				+0.1
3,486,480	+				-0.7
3,486,480	+				-0.7
3,486,488	-		GFF3446	0.12	+0.4
3,486,498	-		GFF3446	0.18	-0.1
3,486,504	+		GFF3446	0.22	-0.2
3,486,510	+		GFF3446	0.25	-0.3
3,486,510	+		GFF3446	0.25	+0.7
3,486,511	+		GFF3446	0.26	+0.4
3,486,511	+		GFF3446	0.26	-0.0
3,486,518	-		GFF3446	0.30	-2.2
3,486,519	-		GFF3446	0.31	+0.1
3,486,524	-		GFF3446	0.34	+0.6
3,486,533	+		GFF3446	0.40	+0.3
3,486,533	+		GFF3446	0.40	-1.9
3,486,533	+		GFF3446	0.40	-0.0
3,486,533	+		GFF3446	0.40	-1.3
3,486,534	-		GFF3446	0.40	+1.5
3,486,541	-		GFF3446	0.44	+0.5
3,486,541	-		GFF3446	0.44	-0.3
3,486,541	-		GFF3446	0.44	+0.3
3,486,575	-		GFF3446	0.65	+0.8
3,486,585	+		GFF3446	0.72	-0.3
3,486,586	-		GFF3446	0.72	-1.9
3,486,586	-		GFF3446	0.72	+2.0
3,486,586	-		GFF3446	0.72	-0.3
3,486,586	-		GFF3446	0.72	+0.2
3,486,603	-		GFF3446	0.83	-1.1
3,486,627	-				+1.2
3,486,642	-				-1.5
3,486,647	-				+0.7
3,486,648	-				+0.2
3,486,648	-				-0.4
3,486,648	-				+1.0
3,486,663	-				-0.4
3,486,668	+				-1.8
3,486,668	+				-0.3
3,486,668	+				-1.4
3,486,668	+				-1.1
3,486,670	+				+0.9
3,486,670	+				+0.1
3,486,675	+				-0.0
3,486,676	-				-0.8
3,486,676	-				-2.6
3,486,678	-				-1.2
3,486,678	-				+0.8
3,486,678	-				-0.2
3,486,681	-				-0.4
3,486,681	-				-1.4
3,486,681	-				-0.7
3,486,686	-				-0.6
3,486,689	+				+1.4
3,486,697	-				+0.4
3,486,718	+				-0.7
3,486,718	-				+0.6
3,486,723	+		GFF3447	0.10	+0.1
3,486,726	-		GFF3447	0.11	-0.2
3,486,728	+		GFF3447	0.11	-2.4
3,486,736	-		GFF3447	0.12	+0.3
3,486,736	-		GFF3447	0.12	-0.2
3,486,738	-		GFF3447	0.12	+0.3
3,486,790	+		GFF3447	0.18	+0.1
3,486,790	+		GFF3447	0.18	+0.8
3,486,795	+		GFF3447	0.19	+0.2
3,486,798	-		GFF3447	0.19	+0.1
3,486,798	-		GFF3447	0.19	-0.9
3,486,839	+		GFF3447	0.24	+0.6
3,486,839	+		GFF3447	0.24	+0.6
3,486,855	-		GFF3447	0.26	+0.4
3,486,857	+		GFF3447	0.26	+0.2
3,486,858	-		GFF3447	0.26	-1.3
3,486,930	+		GFF3447	0.35	-0.1
3,486,938	-		GFF3447	0.36	+1.0
3,486,953	+		GFF3447	0.37	+0.6
3,486,963	+		GFF3447	0.39	+0.5
3,486,963	+		GFF3447	0.39	-2.3
3,486,963	+		GFF3447	0.39	-0.5
3,486,963	+		GFF3447	0.39	-0.5
3,486,963	+		GFF3447	0.39	+0.2
3,486,966	-		GFF3447	0.39	+0.5
3,486,971	-		GFF3447	0.39	+0.0
3,486,971	-		GFF3447	0.39	+0.0
3,486,973	+		GFF3447	0.40	-0.3
3,486,973	+		GFF3447	0.40	-0.8
3,486,973	+		GFF3447	0.40	-1.9
3,486,976	-		GFF3447	0.40	-0.6
3,486,981	-		GFF3447	0.41	-1.0
3,487,007	+		GFF3447	0.44	-1.3
3,487,033	+		GFF3447	0.47	-2.0
3,487,033	+		GFF3447	0.47	+0.2
3,487,033	+		GFF3447	0.47	+0.2
3,487,033	+		GFF3447	0.47	+0.1
3,487,033	+		GFF3447	0.47	-0.1
3,487,033	+		GFF3447	0.47	-2.0
3,487,033	+		GFF3447	0.47	+0.4
3,487,041	-		GFF3447	0.48	+0.3
3,487,041	-		GFF3447	0.48	-1.0
3,487,043	+		GFF3447	0.48	+0.2
3,487,043	+		GFF3447	0.48	-0.7
3,487,043	+		GFF3447	0.48	+0.2
3,487,043	+		GFF3447	0.48	+0.3
3,487,043	+		GFF3447	0.48	+1.1
3,487,051	-		GFF3447	0.49	-0.2
3,487,051	-		GFF3447	0.49	-0.9
3,487,051	-		GFF3447	0.49	+0.9
3,487,061	-		GFF3447	0.50	-1.7
3,487,076	-		GFF3447	0.52	-0.7
3,487,076	-		GFF3447	0.52	-0.6
3,487,076	-		GFF3447	0.52	-1.2
3,487,083	+		GFF3447	0.53	+0.2
3,487,086	-		GFF3447	0.53	+0.6
3,487,113	-		GFF3447	0.56	+1.4
3,487,121	+		GFF3447	0.57	+0.3
3,487,129	-		GFF3447	0.58	+0.7
3,487,129	-		GFF3447	0.58	+1.2
3,487,143	+		GFF3447	0.60	-1.4
3,487,152	-		GFF3447	0.61	+0.4
3,487,158	+		GFF3447	0.61	+0.1
3,487,166	-		GFF3447	0.62	+0.1
3,487,230	-		GFF3447	0.70	+0.6
3,487,248	+		GFF3447	0.72	-1.5
3,487,250	-		GFF3447	0.72	+1.2
3,487,267	+		GFF3447	0.74	-0.5
3,487,267	+		GFF3447	0.74	-0.0
3,487,267	+		GFF3447	0.74	+0.0
3,487,275	-		GFF3447	0.75	+0.5
3,487,275	-		GFF3447	0.75	-0.6
3,487,284	+		GFF3447	0.76	+0.7
3,487,312	+		GFF3447	0.80	+0.1
3,487,324	-		GFF3447	0.81	+0.0
3,487,333	+		GFF3447	0.82	-0.2
3,487,338	+		GFF3447	0.83	-2.0
3,487,341	-		GFF3447	0.83	-0.4
3,487,341	-		GFF3447	0.83	-0.7
3,487,341	-		GFF3447	0.83	-1.4
3,487,341	-		GFF3447	0.83	-2.2
3,487,341	-		GFF3447	0.83	+0.6
3,487,341	-		GFF3447	0.83	+1.2
3,487,359	+		GFF3447	0.85	+0.8
3,487,366	+		GFF3447	0.86	-1.7
3,487,367	+		GFF3447	0.86	-1.1
3,487,367	+		GFF3447	0.86	-0.8
3,487,367	+		GFF3447	0.86	-0.2
3,487,367	-		GFF3447	0.86	-0.3
3,487,396	-		GFF3447	0.90	+0.6
3,487,396	-		GFF3447	0.90	-0.4
3,487,429	-				+0.3
3,487,444	+				+1.0
3,487,444	+				+1.4
3,487,452	-				+0.3
3,487,465	+				-0.4
3,487,483	-				+0.7
3,487,516	+				-0.7
3,487,516	+				-1.4
3,487,534	-				-2.2
3,487,536	+				-1.9
3,487,536	+				-0.4
3,487,536	+				-0.1
3,487,544	-				-1.1
3,487,544	-				+0.1
3,487,544	-				-0.5
3,487,560	+				+0.5
3,487,570	+				-0.3
3,488,378	-				+1.2
3,488,378	-				-0.8
3,488,378	-				+0.4
3,488,390	+				-1.6
3,488,406	-				+0.7
3,488,446	+				+0.2
3,488,461	+		GFF3449	0.10	-2.3
3,488,469	+		GFF3449	0.11	-0.4
3,488,469	+		GFF3449	0.11	+0.4
3,488,469	+		GFF3449	0.11	+0.3
3,488,469	+		GFF3449	0.11	-2.7
3,488,477	-		GFF3449	0.12	-1.4
3,488,477	-		GFF3449	0.12	-1.2
3,488,477	-		GFF3449	0.12	-0.0
3,488,477	-		GFF3449	0.12	+0.0
3,488,481	+		GFF3449	0.12	-1.6
3,488,481	+		GFF3449	0.12	-0.6