Strain Fitness in Sphingobium sp. HT1-2 around GFF1220

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,245,771	+				+1.0
1,245,771	+				+0.1
1,245,771	+				+0.1
1,245,800	+				+1.1
1,245,800	+				+0.3
1,245,816	+				-0.8
1,245,816	-				-0.6
1,245,824	-				-0.3
1,245,824	-				-0.5
1,245,893	-				-0.6
1,245,901	-				+0.4
1,245,904	+				-0.6
1,245,912	-				-0.7
1,245,915	-				+0.4
1,245,943	+				-1.0
1,245,951	-				+1.9
1,245,951	-				+1.3
1,245,974	+				+0.1
1,245,977	+				+0.8
1,245,982	-				-1.8
1,245,988	+				-0.0
1,246,000	+				-0.9
1,246,006	+				+0.2
1,246,026	+				+1.2
1,246,029	-				-0.3
1,246,042	-				-0.2
1,246,049	+				-0.5
1,246,066	+				-1.2
1,246,074	-				+1.6
1,246,076	+				+1.2
1,246,076	+				+1.0
1,246,084	-				-1.0
1,246,096	+				+0.2
1,246,096	+				+0.2
1,246,100	+				+0.7
1,246,100	+				+0.4
1,246,100	+				-0.5
1,246,100	+				-2.0
1,246,100	+				-0.1
1,246,100	+				-0.6
1,246,100	+				+0.1
1,246,100	+				-0.0
1,246,100	+				+0.7
1,246,105	+				-2.0
1,246,108	-				-0.1
1,246,108	-				-0.2
1,246,108	-				+0.1
1,246,108	-				-0.7
1,246,108	-				-0.7
1,246,108	-				-0.0
1,246,108	-				-2.2
1,246,108	-				-2.7
1,246,108	-				+0.2
1,246,108	-				+0.4
1,246,110	+				-1.0
1,246,118	-		GFF1219	0.10	+0.4
1,246,124	+		GFF1219	0.11	-0.2
1,246,124	+		GFF1219	0.11	-1.7
1,246,124	+		GFF1219	0.11	-0.6
1,246,124	+		GFF1219	0.11	-0.5
1,246,124	+		GFF1219	0.11	-0.3
1,246,129	+		GFF1219	0.12	-1.2
1,246,129	+		GFF1219	0.12	+0.3
1,246,132	-		GFF1219	0.12	-0.2
1,246,132	-		GFF1219	0.12	-1.0
1,246,132	-		GFF1219	0.12	+0.2
1,246,132	-		GFF1219	0.12	-0.6
1,246,132	-		GFF1219	0.12	+0.4
1,246,132	-		GFF1219	0.12	-0.9
1,246,137	-		GFF1219	0.13	-0.0
1,246,137	-		GFF1219	0.13	+0.3
1,246,137	-		GFF1219	0.13	+0.6
1,246,139	+		GFF1219	0.13	-0.9
1,246,164	+		GFF1219	0.17	-0.5
1,246,204	+		GFF1219	0.22	-1.3
1,246,209	+		GFF1219	0.23	+0.4
1,246,212	-		GFF1219	0.23	-0.3
1,246,219	+		GFF1219	0.24	-0.4
1,246,221	+		GFF1219	0.25	-1.9
1,246,229	-		GFF1219	0.26	+0.1
1,246,241	+		GFF1219	0.27	+0.5
1,246,242	+		GFF1219	0.28	-2.3
1,246,249	-		GFF1219	0.28	+0.6
1,246,256	-		GFF1219	0.29	+0.6
1,246,262	+		GFF1219	0.30	-0.7
1,246,268	+		GFF1219	0.31	-1.3
1,246,270	-		GFF1219	0.31	+0.2
1,246,300	+		GFF1219	0.36	+0.6
1,246,302	-		GFF1219	0.36	-0.4
1,246,302	-		GFF1219	0.36	+2.7
1,246,302	-		GFF1219	0.36	-0.5
1,246,308	-		GFF1219	0.37	-1.4
1,246,308	-		GFF1219	0.37	-0.8
1,246,308	-		GFF1219	0.37	-0.1
1,246,308	-		GFF1219	0.37	-1.1
1,246,308	-		GFF1219	0.37	+0.6
1,246,336	+		GFF1219	0.41	-0.9
1,246,336	+		GFF1219	0.41	-1.0
1,246,336	+		GFF1219	0.41	-3.1
1,246,336	+		GFF1219	0.41	+0.4
1,246,336	+		GFF1219	0.41	-1.5
1,246,336	+		GFF1219	0.41	-1.5
1,246,336	+		GFF1219	0.41	+0.2
1,246,336	+		GFF1219	0.41	-0.1
1,246,336	+		GFF1219	0.41	-0.2
1,246,336	+		GFF1219	0.41	-0.4
1,246,336	+		GFF1219	0.41	+0.0
1,246,336	+		GFF1219	0.41	+0.2
1,246,336	+		GFF1219	0.41	+0.4
1,246,336	+		GFF1219	0.41	+0.3
1,246,336	+		GFF1219	0.41	+0.2
1,246,336	+		GFF1219	0.41	+0.1
1,246,336	+		GFF1219	0.41	+0.0
1,246,339	-		GFF1219	0.41	-1.0
1,246,341	+		GFF1219	0.41	-0.5
1,246,344	-		GFF1219	0.42	-2.2
1,246,344	-		GFF1219	0.42	-0.8
1,246,344	-		GFF1219	0.42	-1.3
1,246,344	-		GFF1219	0.42	-0.6
1,246,344	-		GFF1219	0.42	-0.5
1,246,344	-		GFF1219	0.42	-1.0
1,246,344	-		GFF1219	0.42	-1.3
1,246,344	-		GFF1219	0.42	+0.5
1,246,344	-		GFF1219	0.42	+0.8
1,246,344	-		GFF1219	0.42	+0.6
1,246,344	-		GFF1219	0.42	-0.0
1,246,344	-		GFF1219	0.42	+0.3
1,246,344	-		GFF1219	0.42	+0.3
1,246,344	-		GFF1219	0.42	-0.2
1,246,344	-		GFF1219	0.42	-1.5
1,246,344	-		GFF1219	0.42	-2.0
1,246,344	-		GFF1219	0.42	-0.5
1,246,344	-		GFF1219	0.42	-0.2
1,246,344	-		GFF1219	0.42	+0.5
1,246,344	-		GFF1219	0.42	+0.3
1,246,349	-		GFF1219	0.42	+1.4
1,246,378	+		GFF1219	0.46	-1.4
1,246,378	+		GFF1219	0.46	-0.6
1,246,383	+		GFF1219	0.47	+0.1
1,246,383	+		GFF1219	0.47	-0.4
1,246,383	+		GFF1219	0.47	-1.0
1,246,384	-		GFF1219	0.47	-0.6
1,246,386	-		GFF1219	0.47	+0.0
1,246,386	-		GFF1219	0.47	-2.0
1,246,391	+		GFF1219	0.48	+0.7
1,246,409	+		GFF1219	0.51	-0.1
1,246,420	+		GFF1219	0.52	+0.3
1,246,428	-		GFF1219	0.53	-1.0
1,246,436	-		GFF1219	0.54	+1.8
1,246,481	+		GFF1219	0.61	-2.3
1,246,491	+		GFF1219	0.62	+0.2
1,246,491	+		GFF1219	0.62	+0.5
1,246,499	-		GFF1219	0.63	+0.2
1,246,499	-		GFF1219	0.63	+0.3
1,246,502	+		GFF1219	0.64	-1.3
1,246,509	-		GFF1219	0.65	+0.0
1,246,516	+		GFF1219	0.66	-0.2
1,246,526	+		GFF1219	0.67	+0.8
1,246,526	+		GFF1219	0.67	-1.4
1,246,526	+		GFF1219	0.67	-1.5
1,246,534	-		GFF1219	0.68	-0.3
1,246,534	-		GFF1219	0.68	-1.8
1,246,534	-		GFF1219	0.68	+1.1
1,246,542	-		GFF1219	0.69	-1.1
1,246,549	+		GFF1219	0.70	+0.9
1,246,551	+		GFF1219	0.70	-1.0
1,246,557	-		GFF1219	0.71	-0.6
1,246,563	+		GFF1219	0.72	-1.2
1,246,571	-		GFF1219	0.73	-0.2
1,246,576	-		GFF1219	0.74	-0.6
1,246,589	+		GFF1219	0.76	-1.2
1,246,592	-		GFF1219	0.76	-0.3
1,246,594	+		GFF1219	0.76	+0.9
1,246,604	+		GFF1219	0.78	-0.2
1,246,607	-		GFF1219	0.78	-1.9
1,246,607	-		GFF1219	0.78	-1.8
1,246,607	-		GFF1219	0.78	-2.0
1,246,608	-		GFF1219	0.78	-1.5
1,246,616	+		GFF1219	0.79	-0.3
1,246,624	-		GFF1219	0.81	-0.2
1,246,624	-		GFF1219	0.81	-2.2
1,246,628	+		GFF1219	0.81	+0.3
1,246,648	+		GFF1219	0.84	-2.9
1,246,662	+		GFF1219	0.86	-2.5
1,246,667	+		GFF1219	0.87	-1.5
1,246,667	+		GFF1219	0.87	-0.7
1,246,667	+		GFF1219	0.87	-2.0
1,246,667	+		GFF1219	0.87	+0.9
1,246,667	+		GFF1219	0.87	-0.6
1,246,675	-		GFF1219	0.88	-0.2
1,246,682	+		GFF1219	0.89	+1.2
1,246,682	+		GFF1219	0.89	+0.2
1,246,690	-		GFF1219	0.90	-1.9
1,246,701	-				-0.5
1,246,719	+				-1.6
1,246,723	-				-0.2
1,246,733	-				-1.8
1,246,752	+				-0.6
1,246,759	-				+1.1
1,246,775	+				-0.5
1,246,795	-				-1.4
1,246,811	+		GFF1220	0.14	+0.5
1,246,833	+		GFF1220	0.20	-1.6
1,246,836	-		GFF1220	0.21	-0.2
1,246,855	-		GFF1220	0.26	-2.5
1,246,857	-		GFF1220	0.27	-0.3
1,246,865	-		GFF1220	0.29	+0.0
1,246,871	+		GFF1220	0.31	-0.4
1,246,879	-		GFF1220	0.33	-0.4
1,246,879	-		GFF1220	0.33	+1.2
1,246,879	-		GFF1220	0.33	-1.3
1,246,884	-		GFF1220	0.35	-1.5
1,246,893	+		GFF1220	0.37	+1.1
1,246,893	+		GFF1220	0.37	-0.9
1,246,893	+		GFF1220	0.37	-0.9
1,246,893	+		GFF1220	0.37	+0.3
1,246,901	-		GFF1220	0.40	-1.3
1,246,901	-		GFF1220	0.40	-1.7
1,246,903	+		GFF1220	0.40	+0.6
1,246,906	-		GFF1220	0.41	-1.8
1,246,907	-		GFF1220	0.41	-2.2
1,246,912	-		GFF1220	0.43	+1.8
1,246,917	-		GFF1220	0.44	-2.1
1,246,942	-		GFF1220	0.51	-0.5
1,246,943	+		GFF1220	0.52	-0.2
1,246,961	+		GFF1220	0.57	-2.2
1,246,961	+		GFF1220	0.57	+0.5
1,246,969	-		GFF1220	0.59	-0.9
1,247,002	-		GFF1220	0.69	+1.0
1,247,018	+		GFF1220	0.73	+0.1
1,247,028	-		GFF1220	0.76	-0.3
1,247,029	+		GFF1220	0.76	-0.2
1,247,037	-		GFF1220	0.79	+1.5
1,247,083	+				-0.6
1,247,089	-				-1.6
1,247,097	+				-1.9
1,247,112	+				-0.2
1,247,112	+				-0.9
1,247,112	+				-1.9
1,247,112	+				-0.2
1,247,112	+				-0.9
1,247,112	+				-1.5
1,247,112	+				+0.9
1,247,112	+				-0.7
1,247,113	-				+0.4
1,247,120	-				+1.2
1,247,120	-				-0.8
1,247,120	-				+1.4
1,247,120	-				-3.2
1,247,120	-				-0.9
1,247,120	-				+0.5
1,247,120	-				-0.1
1,247,120	-				+0.4
1,247,120	-				+0.3
1,247,120	-				-0.8
1,247,120	-				+0.1
1,247,120	-				+0.4
1,247,120	-				+0.1
1,247,120	-				-0.5
1,247,120	-				+0.4
1,247,120	-				-0.8
1,247,120	-				+1.1
1,247,120	-				-0.5
1,247,202	-				-1.7
1,247,346	+				-0.3
1,247,347	-				-0.3
1,247,347	-				+0.6
1,247,354	-				-0.2
1,247,381	+				-0.1
1,247,386	-				-0.9
1,247,432	+		GFF1221	0.11	-1.3
1,247,453	+		GFF1221	0.13	+0.3
1,247,453	+		GFF1221	0.13	+0.4
1,247,461	-		GFF1221	0.13	-1.2
1,247,464	+		GFF1221	0.14	+0.3
1,247,472	-		GFF1221	0.14	-0.4
1,247,472	-		GFF1221	0.14	+0.3
1,247,496	-		GFF1221	0.16	-0.5
1,247,514	-		GFF1221	0.18	-0.5
1,247,567	+		GFF1221	0.23	-0.1
1,247,570	-		GFF1221	0.23	-1.6
1,247,608	-		GFF1221	0.26	+0.2
1,247,636	-		GFF1221	0.28	-1.1
1,247,647	+		GFF1221	0.29	-0.6
1,247,647	+		GFF1221	0.29	+1.4
1,247,647	+		GFF1221	0.29	+0.1
1,247,647	+		GFF1221	0.29	-0.4
1,247,647	+		GFF1221	0.29	-1.6
1,247,655	-		GFF1221	0.30	-1.0
1,247,655	-		GFF1221	0.30	-0.3
1,247,655	-		GFF1221	0.30	+0.6
1,247,655	-		GFF1221	0.30	+0.6
1,247,655	-		GFF1221	0.30	+0.3
1,247,655	-		GFF1221	0.30	-1.9
1,247,716	+		GFF1221	0.35	-1.8
1,247,719	-		GFF1221	0.35	+0.1
1,247,724	-		GFF1221	0.36	+0.3
1,247,736	+		GFF1221	0.37	-0.3
1,247,739	-		GFF1221	0.37	-0.1
1,247,740	+		GFF1221	0.37	-0.1
1,247,745	+		GFF1221	0.38	+0.9
1,247,745	-		GFF1221	0.38	-0.2
1,247,753	-		GFF1221	0.38	+0.5
1,247,758	-		GFF1221	0.39	+0.4
1,247,804	+		GFF1221	0.43	-2.3
1,247,818	+		GFF1221	0.44	-0.5
1,247,820	+		GFF1221	0.44	+0.0
1,247,820	+		GFF1221	0.44	+0.2
1,247,820	+		GFF1221	0.44	-0.3
1,247,828	-		GFF1221	0.45	+0.8
1,247,828	-		GFF1221	0.45	+0.3
1,247,828	-		GFF1221	0.45	+0.5
1,247,828	-		GFF1221	0.45	-0.4
1,247,828	-		GFF1221	0.45	-2.2
1,247,828	-		GFF1221	0.45	+0.6
1,247,828	-		GFF1221	0.45	-1.4
1,247,828	-		GFF1221	0.45	+0.2
1,247,828	-		GFF1221	0.45	+0.8
1,247,840	+		GFF1221	0.46	-0.8
1,247,848	-		GFF1221	0.46	-0.8
1,247,869	-		GFF1221	0.48	-1.0
1,247,872	+		GFF1221	0.49	+0.7
1,247,872	+		GFF1221	0.49	+0.7
1,247,872	+		GFF1221	0.49	+0.3
1,247,873	+		GFF1221	0.49	+0.4
1,247,880	-		GFF1221	0.49	+1.1
1,247,890	+		GFF1221	0.50	-0.7
1,247,924	+		GFF1221	0.53	-0.8
1,247,940	+		GFF1221	0.54	-0.3
1,247,945	+		GFF1221	0.55	+0.1
1,247,948	-		GFF1221	0.55	-0.3
1,247,965	+		GFF1221	0.56	-0.4
1,248,011	+		GFF1221	0.60	-0.1
1,248,011	+		GFF1221	0.60	-1.8
1,248,018	+		GFF1221	0.61	-0.6
1,248,018	+		GFF1221	0.61	+0.8
1,248,036	-		GFF1221	0.62	-1.9
1,248,036	-		GFF1221	0.62	+0.9
1,248,057	+		GFF1221	0.64	-1.4
1,248,084	-		GFF1221	0.67	-0.6
1,248,086	+		GFF1221	0.67	-0.0