Strain Fitness in Sphingobium sp. HT1-2 around GFF5158

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,149,336	+				+0.1
5,149,336	+				+2.2
5,149,336	+				-0.8
5,149,336	+				-1.6
5,149,341	+				-0.1
5,149,341	+				-0.1
5,149,341	+				-3.0
5,149,341	+				-0.3
5,149,341	+				-0.1
5,149,344	+				+0.6
5,149,346	+				-1.0
5,149,354	+				+0.2
5,149,380	+				-0.3
5,149,386	+				-1.4
5,149,388	-				-0.6
5,149,388	-				+0.8
5,149,394	-				-0.1
5,149,403	-				+0.0
5,149,411	-				-1.9
5,149,411	-				-0.2
5,149,426	+				-0.3
5,149,431	-				-0.8
5,149,434	-				+0.7
5,149,446	+				-1.1
5,149,454	-				-0.2
5,149,456	-				-1.4
5,149,456	-				+0.4
5,149,475	-				+0.7
5,149,482	-				+0.2
5,149,500	-				+0.0
5,149,510	-				-1.9
5,149,533	+				-0.1
5,149,533	+				-0.3
5,149,535	+				-1.1
5,149,548	-				-0.0
5,149,549	-				+0.9
5,149,554	+				-0.1
5,149,554	+				-0.5
5,149,562	-				+0.4
5,149,566	-				-0.8
5,149,570	-				+0.5
5,149,572	+				-2.2
5,149,594	-				-0.3
5,149,594	-				+0.7
5,149,598	-				-1.9
5,149,604	-				-2.4
5,149,609	+				-1.7
5,149,619	+				-0.1
5,149,619	-				-0.1
5,149,628	-				+0.1
5,149,628	-				-0.0
5,149,645	-				+0.2
5,149,649	+				-0.7
5,149,657	-				-0.4
5,149,657	-				+0.4
5,149,657	-				-1.2
5,149,676	+				-0.0
5,149,676	+				-1.8
5,149,676	+				-1.1
5,149,676	+				+0.4
5,149,683	+				-1.1
5,149,683	+				-1.3
5,149,683	+				-0.5
5,149,683	+				-0.0
5,149,683	+				-0.7
5,149,683	+				+1.0
5,149,683	+				-0.2
5,149,684	-				-2.0
5,149,688	+				-0.7
5,149,688	+				+0.3
5,149,691	-				+0.0
5,149,691	-				+0.3
5,149,691	-				-2.0
5,149,691	-				-1.9
5,149,691	-				-1.9
5,149,691	-				+0.6
5,149,691	-				-1.9
5,149,691	-				+0.6
5,149,691	-				-1.4
5,149,696	-				-0.1
5,149,696	-				-0.4
5,149,696	-				-0.9
5,149,696	-				-0.3
5,149,696	-				+0.3
5,149,700	-				-0.3
5,149,717	+				-0.4
5,149,717	+				-1.9
5,149,717	+				-0.2
5,149,722	+				-0.5
5,149,725	-				-0.5
5,149,725	-				+0.1
5,149,725	-				-0.0
5,149,725	-				-0.1
5,149,725	-				-1.8
5,149,725	-				-0.3
5,149,725	-				-0.3
5,149,725	-				-0.4
5,149,735	-				+0.2
5,149,752	+				+1.4
5,149,752	+				+0.2
5,149,752	+				+0.3
5,149,760	-				-1.7
5,149,772	+				-1.1
5,149,772	+				-0.3
5,149,772	+				-0.2
5,149,772	+				+1.3
5,149,780	-		GFF5157	0.11	+0.9
5,149,780	-		GFF5157	0.11	-1.2
5,149,780	-		GFF5157	0.11	-0.8
5,149,780	-		GFF5157	0.11	+0.4
5,149,780	-		GFF5157	0.11	+0.1
5,149,786	+		GFF5157	0.12	-0.2
5,149,786	+		GFF5157	0.12	-0.6
5,149,805	-		GFF5157	0.16	-0.7
5,149,812	-		GFF5157	0.18	-1.7
5,149,814	-		GFF5157	0.18	+0.1
5,149,826	+		GFF5157	0.21	-0.7
5,149,828	+		GFF5157	0.21	+1.3
5,149,837	-		GFF5157	0.23	+0.9
5,149,848	+		GFF5157	0.25	-0.2
5,149,861	+		GFF5157	0.28	-2.1
5,149,861	+		GFF5157	0.28	-0.4
5,149,861	+		GFF5157	0.28	-0.3
5,149,869	-		GFF5157	0.30	-0.2
5,149,869	-		GFF5157	0.30	+1.1
5,149,876	-		GFF5157	0.31	+0.2
5,149,882	+		GFF5157	0.33	-0.6
5,149,901	-		GFF5157	0.37	-0.9
5,149,923	+		GFF5157	0.41	-1.1
5,149,931	-		GFF5157	0.43	-2.3
5,149,944	+		GFF5157	0.46	-1.3
5,149,952	+		GFF5157	0.48	-1.0
5,149,972	+		GFF5157	0.52	+1.6
5,149,973	-		GFF5157	0.52	+0.2
5,149,984	+		GFF5157	0.54	+0.2
5,149,987	+		GFF5157	0.55	-0.1
5,149,987	-		GFF5157	0.55	-0.8
5,149,989	+		GFF5157	0.55	-2.5
5,149,989	+		GFF5157	0.55	+1.6
5,149,992	-		GFF5157	0.56	-0.3
5,149,995	-		GFF5157	0.57	-2.3
5,149,997	-		GFF5157	0.57	-0.7
5,150,000	+		GFF5157	0.58	+0.5
5,150,007	+		GFF5157	0.59	-0.5
5,150,007	+		GFF5157	0.59	-1.7
5,150,007	+		GFF5157	0.59	-2.0
5,150,008	-		GFF5157	0.59	+0.1
5,150,008	-		GFF5157	0.59	-0.7
5,150,009	+		GFF5157	0.60	-0.1
5,150,010	-		GFF5157	0.60	+1.0
5,150,010	-		GFF5157	0.60	+0.6
5,150,015	-		GFF5157	0.61	-0.6
5,150,015	-		GFF5157	0.61	+1.2
5,150,015	-		GFF5157	0.61	-0.5
5,150,015	-		GFF5157	0.61	-1.5
5,150,017	+		GFF5157	0.61	-0.7
5,150,017	+		GFF5157	0.61	+1.0
5,150,017	-		GFF5157	0.61	+0.0
5,150,020	-		GFF5157	0.62	-0.9
5,150,020	-		GFF5157	0.62	+0.3
5,150,022	+		GFF5157	0.62	-1.7
5,150,024	+		GFF5157	0.63	+0.6
5,150,027	+		GFF5157	0.63	-0.8
5,150,040	-		GFF5157	0.66	+0.4
5,150,042	+		GFF5157	0.67	-0.9
5,150,042	+		GFF5157	0.67	-2.8
5,150,050	-		GFF5157	0.68	-2.8
5,150,063	+		GFF5157	0.71	+0.4
5,150,067	-		GFF5157	0.72	-2.4
5,150,074	+		GFF5157	0.73	+0.7
5,150,090	+		GFF5157	0.77	+0.3
5,150,090	-		GFF5157	0.77	+1.2
5,150,095	+		GFF5157	0.78	+0.9
5,150,095	-		GFF5157	0.78	-1.9
5,150,095	-		GFF5157	0.78	+1.0
5,150,103	-		GFF5157	0.80	+0.1
5,150,114	+		GFF5157	0.82	-0.7
5,150,125	-		GFF5157	0.84	+0.4
5,150,127	+		GFF5157	0.85	-1.6
5,150,127	+		GFF5157	0.85	-1.9
5,150,135	-		GFF5157	0.86	+1.4
5,150,135	-		GFF5157	0.86	-0.6
5,150,145	-		GFF5157	0.89	-0.8
5,150,154	-				+0.4
5,150,169	-				+0.6
5,150,169	-				+1.5
5,150,182	+				-0.6
5,150,182	+				-0.2
5,150,182	+				-0.3
5,150,182	+				+0.9
5,150,182	+				-2.0
5,150,182	+				-0.1
5,150,182	+				-0.0
5,150,182	+				+0.5
5,150,182	+				-2.4
5,150,182	+				-0.7
5,150,182	+				+0.7
5,150,182	+				-2.0
5,150,182	+				-1.8
5,150,182	+				-1.0
5,150,182	+				-0.8
5,150,182	+				+0.2
5,150,182	+				+1.1
5,150,182	+				+0.1
5,150,190	-				-1.4
5,150,190	-				-1.7
5,150,190	-				-0.3
5,150,190	-				+0.0
5,150,190	-				+1.5
5,150,190	-				-1.0
5,150,190	-				-0.3
5,150,190	-				-2.2
5,150,190	-				+0.3
5,150,190	-				+0.9
5,150,190	-				+0.5
5,150,190	-				-1.3
5,150,190	-				+0.2
5,150,190	-				-0.0
5,150,208	+				-0.6
5,150,213	+				+0.9
5,150,213	+				-0.3
5,150,214	+				+1.0
5,150,214	-				+0.3
5,150,221	-				-1.2
5,150,221	-				+0.6
5,150,221	-				-0.1
5,150,221	-				+0.1
5,150,221	-				-0.7
5,150,227	-				-0.5
5,150,227	-				-0.9
5,150,232	-				-2.3
5,150,255	-				-0.4
5,150,256	-				+1.5
5,150,263	-				-0.5
5,150,263	-				+0.3
5,150,263	-				-0.4
5,150,263	-				+1.1
5,150,489	+		GFF5158	0.14	-1.3
5,150,489	+		GFF5158	0.14	-0.6
5,150,489	+		GFF5158	0.14	-0.8
5,150,510	+		GFF5158	0.15	-1.4
5,150,512	+		GFF5158	0.15	-0.0
5,150,537	+		GFF5158	0.17	-1.1
5,150,544	+		GFF5158	0.17	-0.7
5,150,552	-		GFF5158	0.17	-0.6
5,150,552	-		GFF5158	0.17	-0.7
5,150,562	+		GFF5158	0.18	-0.6
5,150,573	+		GFF5158	0.18	-1.5
5,150,573	+		GFF5158	0.18	-0.1
5,150,594	-		GFF5158	0.20	+0.4
5,150,595	+		GFF5158	0.20	-0.2
5,150,609	+		GFF5158	0.20	-0.4
5,150,609	+		GFF5158	0.20	-1.9
5,150,609	+		GFF5158	0.20	-0.9
5,150,609	+		GFF5158	0.20	+0.5
5,150,609	+		GFF5158	0.20	-0.8
5,150,609	+		GFF5158	0.20	-0.3
5,150,609	+		GFF5158	0.20	-1.6
5,150,609	+		GFF5158	0.20	-1.9
5,150,613	+		GFF5158	0.21	+0.5
5,150,617	-		GFF5158	0.21	+1.2
5,150,617	-		GFF5158	0.21	-0.3
5,150,617	-		GFF5158	0.21	+0.4
5,150,617	-		GFF5158	0.21	-0.8
5,150,623	+		GFF5158	0.21	-1.5
5,150,638	+		GFF5158	0.22	-1.6
5,150,646	-		GFF5158	0.22	-0.4
5,150,651	-		GFF5158	0.23	-2.9
5,150,651	-		GFF5158	0.23	-1.1
5,150,651	-		GFF5158	0.23	+0.5
5,150,676	-		GFF5158	0.24	-0.3
5,150,676	-		GFF5158	0.24	-0.4
5,150,691	-		GFF5158	0.25	+0.7
5,150,698	+		GFF5158	0.25	+0.4
5,150,698	+		GFF5158	0.25	-0.2
5,150,698	+		GFF5158	0.25	-0.3
5,150,701	-		GFF5158	0.25	-2.3
5,150,703	+		GFF5158	0.25	-1.6
5,150,703	+		GFF5158	0.25	-2.5
5,150,728	-		GFF5158	0.27	-1.3
5,150,729	+		GFF5158	0.27	+0.3
5,150,729	+		GFF5158	0.27	-1.4
5,150,729	+		GFF5158	0.27	-0.6
5,150,734	+		GFF5158	0.27	-0.8
5,150,737	-		GFF5158	0.27	+0.0
5,150,742	-		GFF5158	0.27	+0.6
5,150,755	-		GFF5158	0.28	-2.4
5,150,758	+		GFF5158	0.28	-2.4
5,150,758	+		GFF5158	0.28	+0.6
5,150,771	-		GFF5158	0.29	+0.2
5,150,808	-		GFF5158	0.31	-0.5
5,150,816	+		GFF5158	0.31	-0.7
5,150,818	+		GFF5158	0.31	-0.1
5,150,840	-		GFF5158	0.32	-1.0
5,150,851	+		GFF5158	0.33	-1.1
5,150,858	+		GFF5158	0.33	-1.0
5,150,859	-		GFF5158	0.33	-0.4
5,150,881	+		GFF5158	0.35	+0.2
5,150,902	-		GFF5158	0.36	+0.1
5,150,904	+		GFF5158	0.36	-1.0
5,150,910	-		GFF5158	0.36	-0.5
5,150,936	+		GFF5158	0.38	-1.1
5,150,936	+		GFF5158	0.38	-0.2
5,150,936	+		GFF5158	0.38	-1.4
5,150,936	+		GFF5158	0.38	+0.1
5,150,946	+		GFF5158	0.38	-2.4
5,150,946	+		GFF5158	0.38	-2.2
5,150,954	-		GFF5158	0.38	+0.1
5,150,954	-		GFF5158	0.38	-0.4
5,150,959	+		GFF5158	0.39	-1.6
5,150,959	+		GFF5158	0.39	+0.5
5,150,959	-		GFF5158	0.39	-1.1
5,150,981	+		GFF5158	0.40	-0.2
5,150,986	+		GFF5158	0.40	-2.9
5,150,989	-		GFF5158	0.40	-0.8
5,151,024	+		GFF5158	0.42	+0.2
5,151,038	-		GFF5158	0.43	-1.2
5,151,045	+		GFF5158	0.43	+0.0
5,151,053	-		GFF5158	0.44	+0.4
5,151,061	-		GFF5158	0.44	-1.6
5,151,077	-		GFF5158	0.45	+0.6
5,151,077	-		GFF5158	0.45	+0.7
5,151,077	-		GFF5158	0.45	-0.5
5,151,077	-		GFF5158	0.45	-2.9
5,151,099	-		GFF5158	0.46	-0.5
5,151,109	+		GFF5158	0.47	-0.1
5,151,110	-		GFF5158	0.47	-0.7
5,151,116	+		GFF5158	0.47	+0.4
5,151,142	-		GFF5158	0.48	-0.7
5,151,172	+		GFF5158	0.50	+0.3
5,151,215	+		GFF5158	0.52	+0.0
5,151,215	+		GFF5158	0.52	-1.6
5,151,215	-		GFF5158	0.52	-1.1
5,151,220	+		GFF5158	0.52	-1.4
5,151,220	+		GFF5158	0.52	-1.6
5,151,220	+		GFF5158	0.52	-0.8
5,151,223	-		GFF5158	0.53	-2.2
5,151,228	-		GFF5158	0.53	-0.1
5,151,228	-		GFF5158	0.53	+0.0
5,151,228	-		GFF5158	0.53	-1.6
5,151,261	-		GFF5158	0.55	+1.0
5,151,261	-		GFF5158	0.55	-0.2
5,151,268	+		GFF5158	0.55	+0.0
5,151,283	-		GFF5158	0.56	-1.7
5,151,290	+		GFF5158	0.56	-0.8
5,151,290	+		GFF5158	0.56	-0.1
5,151,298	-		GFF5158	0.57	+0.5
5,151,298	-		GFF5158	0.57	-0.1
5,151,298	-		GFF5158	0.57	+0.9
5,151,313	+		GFF5158	0.57	+0.1
5,151,313	+		GFF5158	0.57	+1.7
5,151,321	-		GFF5158	0.58	-0.6
5,151,321	-		GFF5158	0.58	-0.4
5,151,321	-		GFF5158	0.58	+0.4
5,151,323	+		GFF5158	0.58	-0.6
5,151,323	+		GFF5158	0.58	-0.2
5,151,323	+		GFF5158	0.58	+0.2
5,151,331	-		GFF5158	0.58	-0.0
5,151,357	+		GFF5158	0.60	-0.8
5,151,357	+		GFF5158	0.60	-0.5
5,151,360	-		GFF5158	0.60	-0.1
5,151,361	-		GFF5158	0.60	+0.2
5,151,393	+		GFF5158	0.62	-1.0
5,151,416	+		GFF5158	0.63	+1.2
5,151,426	+		GFF5158	0.63	+0.3
5,151,426	+		GFF5158	0.63	+0.0
5,151,434	+		GFF5158	0.64	-2.1
5,151,434	+		GFF5158	0.64	+0.9
5,151,437	-		GFF5158	0.64	-1.6
5,151,442	+		GFF5158	0.64	+0.7
5,151,447	-		GFF5158	0.64	-2.2
5,151,457	+		GFF5158	0.65	-2.6
5,151,478	+		GFF5158	0.66	-0.7
5,151,478	-		GFF5158	0.66	+0.2
5,151,485	+		GFF5158	0.66	-0.5
5,151,490	+		GFF5158	0.67	-1.5
5,151,493	-		GFF5158	0.67	+0.1
5,151,503	-		GFF5158	0.67	-0.8
5,151,503	-		GFF5158	0.67	+0.0
5,151,519	-		GFF5158	0.68	-0.6
5,151,537	-		GFF5158	0.69	-0.8
5,151,547	-		GFF5158	0.70	-2.5
5,151,552	+		GFF5158	0.70	-0.5
5,151,557	+		GFF5158	0.70	-2.5
5,151,557	+		GFF5158	0.70	-2.7
5,151,557	+		GFF5158	0.70	+0.3
5,151,557	+		GFF5158	0.70	-0.1
5,151,557	+		GFF5158	0.70	-0.0
5,151,557	+		GFF5158	0.70	-0.5
5,151,565	-		GFF5158	0.71	-0.9
5,151,565	-		GFF5158	0.71	+0.5
5,151,565	-		GFF5158	0.71	+0.2
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5,151,569	+		GFF5158	0.71	-2.4
5,151,574	+		GFF5158	0.71	-2.1
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5,151,579	+		GFF5158	0.71	-1.3
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5,151,871	-		GFF5158	0.87	-0.7
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5,151,903	+		GFF5158	0.88	+2.2
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5,151,962	+				-2.4
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5,152,018	-				+0.3
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5,152,065	-				+0.7
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5,152,085	-				-1.7
5,152,094	-				+0.5
5,152,101	+				-2.7
5,152,104	-				-0.5
5,152,109	-				+0.9
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5,152,192	+				-0.9
5,152,192	+				+0.6
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5,152,264	-		GFF5159	0.22	-3.2
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5,152,279	-		GFF5159	0.26	-1.1
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5,152,330	+		GFF5159	0.41	-2.7
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5,152,343	-		GFF5159	0.45	-0.2
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5,152,466	+		GFF5159	0.81	-1.1
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5,152,496	-		GFF5159	0.89	-1.1
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5,152,511	-				+0.6
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5,152,526	+				-0.8
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5,152,539	-				-1.3
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5,153,019	+				-0.8
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5,153,069	+				-0.4
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5,153,069	+				+0.4
5,153,069	+				+0.3
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5,153,069	+				-0.8
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5,153,069	+				-1.6
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5,153,077	-				-2.4
5,153,077	-				-2.3
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5,153,077	-				-1.3
5,153,077	-				-1.8
5,153,077	-				-1.6
5,153,077	-				-2.4
5,153,077	-				-1.9
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