Strain Fitness in Sphingobium sp. HT1-2 around GFF3725

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,767,334	+		GFF3724	0.48	-0.9
3,767,368	+		GFF3724	0.51	+0.7
3,767,400	+		GFF3724	0.53	-0.1
3,767,403	-		GFF3724	0.53	+0.9
3,767,407	+		GFF3724	0.53	-0.4
3,767,407	+		GFF3724	0.53	-1.7
3,767,423	-		GFF3724	0.54	-0.7
3,767,453	+		GFF3724	0.56	-0.2
3,767,455	-		GFF3724	0.56	-2.1
3,767,462	-		GFF3724	0.57	-0.4
3,767,464	+		GFF3724	0.57	-1.0
3,767,464	+		GFF3724	0.57	-1.4
3,767,472	-		GFF3724	0.58	+0.7
3,767,474	+		GFF3724	0.58	-1.2
3,767,477	-		GFF3724	0.58	-0.7
3,767,480	-		GFF3724	0.58	-0.9
3,767,482	-		GFF3724	0.58	-0.7
3,767,482	-		GFF3724	0.58	+0.2
3,767,483	+		GFF3724	0.58	-2.9
3,767,490	-		GFF3724	0.59	-0.6
3,767,490	-		GFF3724	0.59	+0.1
3,767,490	-		GFF3724	0.59	+0.0
3,767,491	+		GFF3724	0.59	-1.9
3,767,491	+		GFF3724	0.59	+0.0
3,767,491	+		GFF3724	0.59	-0.3
3,767,504	-		GFF3724	0.60	-1.4
3,767,509	-		GFF3724	0.60	-0.7
3,767,523	-		GFF3724	0.61	-0.2
3,767,567	+		GFF3724	0.64	-0.9
3,767,575	-		GFF3724	0.65	+0.3
3,767,614	+		GFF3724	0.67	-0.4
3,767,622	-		GFF3724	0.68	-1.1
3,767,640	+		GFF3724	0.69	-0.3
3,767,699	+		GFF3724	0.73	+0.2
3,767,699	+		GFF3724	0.73	+0.4
3,767,699	+		GFF3724	0.73	-2.1
3,767,699	+		GFF3724	0.73	+1.5
3,767,732	+		GFF3724	0.75	-0.6
3,767,742	+		GFF3724	0.76	+0.1
3,767,742	+		GFF3724	0.76	-0.2
3,767,751	+		GFF3724	0.76	-0.5
3,767,777	+		GFF3724	0.78	-0.7
3,767,778	+		GFF3724	0.78	-0.4
3,767,801	+		GFF3724	0.80	-0.2
3,767,809	-		GFF3724	0.80	-0.1
3,767,809	-		GFF3724	0.80	+0.1
3,767,813	+		GFF3724	0.81	-0.9
3,767,821	-		GFF3724	0.81	-0.3
3,767,821	-		GFF3724	0.81	-0.8
3,767,821	-		GFF3724	0.81	-1.1
3,767,823	+		GFF3724	0.81	+0.5
3,767,831	-		GFF3724	0.82	-1.6
3,767,842	+		GFF3724	0.83	+1.1
3,767,870	+		GFF3724	0.84	-0.2
3,767,894	+		GFF3724	0.86	-0.8
3,767,900	+		GFF3724	0.86	-2.7
3,767,914	+		GFF3724	0.87	+0.6
3,767,914	+		GFF3724	0.87	-1.2
3,767,914	+		GFF3724	0.87	+0.1
3,767,914	+		GFF3724	0.87	+0.3
3,767,914	+		GFF3724	0.87	-0.7
3,767,922	-		GFF3724	0.88	+0.2
3,767,922	-		GFF3724	0.88	-2.3
3,767,927	-		GFF3724	0.88	+1.7
3,767,959	-				-1.2
3,767,978	+				+0.7
3,767,986	-				-0.6
3,768,012	+				-0.4
3,768,032	+				-0.2
3,768,037	+				-2.9
3,768,037	+				+0.1
3,768,037	+				-0.8
3,768,039	-				-2.1
3,768,040	-				-1.0
3,768,040	-				-1.4
3,768,040	-				+0.2
3,768,040	-				+0.8
3,768,042	+				-0.2
3,768,042	+				+0.8
3,768,045	-				+0.4
3,768,050	-				-0.9
3,768,050	-				+0.5
3,768,050	-				-0.1
3,768,050	-				-1.8
3,768,053	+				-0.0
3,768,053	+				-1.3
3,768,053	+				+0.6
3,768,061	-				-1.7
3,768,061	-				+0.4
3,768,065	+				-3.3
3,768,065	+				-0.1
3,768,073	-				-0.5
3,768,097	-				+0.8
3,768,099	-				+0.1
3,768,112	-				-0.9
3,768,120	-				+0.4
3,768,120	-				-0.4
3,768,123	-				+0.9
3,768,125	+				-0.5
3,768,128	-				+0.2
3,768,133	-				-0.1
3,768,217	+				+0.2
3,768,224	-				-1.1
3,768,224	-				-0.4
3,768,225	-				-0.1
3,768,225	-				+0.8
3,768,225	-				-1.5
3,768,233	+				+0.4
3,768,233	-				+0.6
3,768,241	+				-0.8
3,768,241	+				-1.2
3,768,241	-				+0.3
3,768,241	-				-0.9
3,768,249	-				-1.5
3,768,249	-				-2.0
3,768,251	+				+0.3
3,768,252	+				-0.4
3,768,274	+				+0.6
3,768,279	+				+0.6
3,768,279	+				-0.2
3,768,286	+				-0.4
3,768,295	-				-0.6
3,768,349	+				-0.3
3,768,355	+				+0.4
3,768,358	-				+1.0
3,768,360	+				-0.1
3,768,360	+				-0.4
3,768,360	+				-0.6
3,768,360	+				+0.9
3,768,360	+				-0.8
3,768,363	-				-1.8
3,768,368	-				-0.8
3,768,368	-				-1.2
3,768,378	+				-1.3
3,768,386	-				+0.0
3,768,396	+				-1.0
3,768,404	-				+1.4
3,768,410	-		GFF3725	0.10	+0.4
3,768,410	-		GFF3725	0.10	+0.9
3,768,410	-		GFF3725	0.10	-0.0
3,768,415	+		GFF3725	0.11	+0.5
3,768,419	+		GFF3725	0.11	-0.4
3,768,427	-		GFF3725	0.12	+0.3
3,768,464	+		GFF3725	0.17	+0.1
3,768,469	+		GFF3725	0.17	-0.1
3,768,469	+		GFF3725	0.17	+0.7
3,768,472	-		GFF3725	0.18	+0.3
3,768,475	-		GFF3725	0.18	-0.7
3,768,494	-		GFF3725	0.20	+0.0
3,768,515	+		GFF3725	0.23	-1.6
3,768,515	+		GFF3725	0.23	-1.8
3,768,515	+		GFF3725	0.23	-0.2
3,768,515	+		GFF3725	0.23	+0.5
3,768,515	+		GFF3725	0.23	-1.4
3,768,515	+		GFF3725	0.23	+1.0
3,768,515	+		GFF3725	0.23	-0.3
3,768,515	+		GFF3725	0.23	-0.5
3,768,515	+		GFF3725	0.23	+1.4
3,768,520	+		GFF3725	0.23	-0.7
3,768,523	-		GFF3725	0.24	-1.3
3,768,523	-		GFF3725	0.24	-0.8
3,768,523	-		GFF3725	0.24	-1.8
3,768,523	-		GFF3725	0.24	+0.3
3,768,523	-		GFF3725	0.24	-1.4
3,768,523	-		GFF3725	0.24	+0.3
3,768,523	-		GFF3725	0.24	-0.1
3,768,523	-		GFF3725	0.24	-0.2
3,768,523	-		GFF3725	0.24	-1.0
3,768,523	-		GFF3725	0.24	-0.9
3,768,523	-		GFF3725	0.24	+0.6
3,768,523	-		GFF3725	0.24	+1.2
3,768,523	-		GFF3725	0.24	-0.3
3,768,523	-		GFF3725	0.24	+0.7
3,768,523	-		GFF3725	0.24	-0.1
3,768,523	-		GFF3725	0.24	-2.1
3,768,523	-		GFF3725	0.24	+0.2
3,768,523	-		GFF3725	0.24	-1.0
3,768,533	-		GFF3725	0.25	+1.0
3,768,539	-		GFF3725	0.25	-1.0
3,768,546	+		GFF3725	0.26	-0.7
3,768,554	-		GFF3725	0.27	-0.6
3,768,562	+		GFF3725	0.28	+0.9
3,768,577	-		GFF3725	0.30	+0.2
3,768,577	-		GFF3725	0.30	-1.3
3,768,586	-		GFF3725	0.31	-0.6
3,768,588	+		GFF3725	0.31	+0.1
3,768,610	-		GFF3725	0.34	-2.8
3,768,632	+		GFF3725	0.36	+0.2
3,768,645	-		GFF3725	0.38	+0.9
3,768,678	+		GFF3725	0.42	-0.3
3,768,683	+		GFF3725	0.42	+1.7
3,768,686	-		GFF3725	0.43	-0.1
3,768,686	-		GFF3725	0.43	-0.6
3,768,688	+		GFF3725	0.43	+1.0
3,768,688	+		GFF3725	0.43	-0.1
3,768,688	+		GFF3725	0.43	-0.7
3,768,696	-		GFF3725	0.44	-0.2
3,768,696	-		GFF3725	0.44	-0.7
3,768,696	-		GFF3725	0.44	+0.1
3,768,705	+		GFF3725	0.45	-0.1
3,768,713	+		GFF3725	0.46	-0.3
3,768,713	+		GFF3725	0.46	-0.1
3,768,713	-		GFF3725	0.46	-0.2
3,768,765	+		GFF3725	0.52	+0.5
3,768,765	+		GFF3725	0.52	+0.6
3,768,773	-		GFF3725	0.53	-0.6
3,768,775	+		GFF3725	0.53	+0.9
3,768,783	-		GFF3725	0.54	+1.5
3,768,789	+		GFF3725	0.54	+1.1
3,768,792	-		GFF3725	0.55	-0.2
3,768,799	-		GFF3725	0.56	+0.1
3,768,808	-		GFF3725	0.57	+0.5
3,768,810	+		GFF3725	0.57	+0.8
3,768,815	+		GFF3725	0.57	-0.2
3,768,849	+		GFF3725	0.61	+1.0
3,768,849	+		GFF3725	0.61	+0.4
3,768,849	+		GFF3725	0.61	-0.7
3,768,856	+		GFF3725	0.62	+0.6
3,768,857	-		GFF3725	0.62	+0.4
3,768,857	-		GFF3725	0.62	-0.4
3,768,874	-		GFF3725	0.64	+0.4
3,768,901	+		GFF3725	0.67	-0.4
3,768,901	+		GFF3725	0.67	+0.6
3,768,901	+		GFF3725	0.67	-0.4
3,768,909	-		GFF3725	0.68	+2.4
3,768,909	-		GFF3725	0.68	-1.4
3,768,909	-		GFF3725	0.68	+0.4
3,768,911	+		GFF3725	0.69	+0.7
3,768,914	-		GFF3725	0.69	-1.0
3,768,921	+		GFF3725	0.70	-1.7
3,768,923	+		GFF3725	0.70	-0.2
3,768,931	-		GFF3725	0.71	-0.5
3,768,948	+		GFF3725	0.73	-0.0
3,768,956	-		GFF3725	0.74	+1.1
3,768,956	-		GFF3725	0.74	+0.5
3,768,958	+		GFF3725	0.74	-0.3
3,768,966	-		GFF3725	0.75	+1.9
3,768,966	-		GFF3725	0.75	-1.7
3,768,966	-		GFF3725	0.75	+0.2
3,768,992	+		GFF3725	0.78	+0.1
3,769,000	-		GFF3725	0.79	+0.2
3,769,000	-		GFF3725	0.79	-0.7
3,769,005	+		GFF3725	0.80	+0.1
3,769,005	+		GFF3725	0.80	+0.3
3,769,005	+		GFF3725	0.80	+0.0
3,769,005	+		GFF3725	0.80	+0.4
3,769,005	+		GFF3725	0.80	-0.8
3,769,005	+		GFF3725	0.80	-0.1
3,769,005	+		GFF3725	0.80	+0.8
3,769,012	+		GFF3725	0.80	-1.0
3,769,013	-		GFF3725	0.80	-0.2
3,769,013	-		GFF3725	0.80	+0.3
3,769,013	-		GFF3725	0.80	+0.5
3,769,013	-		GFF3725	0.80	+0.4
3,769,013	-		GFF3725	0.80	-0.2
3,769,013	-		GFF3725	0.80	-0.5
3,769,013	-		GFF3725	0.80	+1.5
3,769,013	-		GFF3725	0.80	-1.1
3,769,013	-		GFF3725	0.80	-1.2
3,769,013	-		GFF3725	0.80	-0.9
3,769,020	+		GFF3725	0.81	+0.9
3,769,028	-		GFF3725	0.82	+0.6
3,769,037	+		GFF3725	0.83	+0.7
3,769,042	+		GFF3725	0.84	+1.0
3,769,045	-		GFF3725	0.84	+1.6
3,769,045	-		GFF3725	0.84	-0.7
3,769,045	-		GFF3725	0.84	-0.1
3,769,045	-		GFF3725	0.84	-1.4
3,769,050	+		GFF3725	0.85	+0.0
3,769,058	-		GFF3725	0.86	-0.2
3,769,063	-		GFF3725	0.86	+0.8
3,769,083	+		GFF3725	0.89	-0.9
3,769,102	-				-1.4
3,769,106	+				-0.9
3,769,106	+				-0.2
3,769,106	+				+0.9
3,769,106	+				+0.3
3,769,106	+				+0.0
3,769,106	+				-0.7
3,769,113	+				-0.2
3,769,114	-				-0.4
3,769,114	-				-0.9
3,769,114	-				-1.7
3,769,114	-				-0.3
3,769,115	-				-0.7
3,769,117	+				-1.3
3,769,121	-				+0.9
3,769,126	-				-0.1
3,769,166	+				-2.1
3,769,167	-				+1.1
3,769,184	-				-0.2
3,769,189	-				-0.0
3,769,198	+				-0.7
3,769,219	+				+0.2
3,769,261	+				-1.7
3,769,317	-				-2.3
3,769,317	-				-0.2
3,769,324	+				+0.3
3,769,324	+				-0.3
3,769,324	+				-1.0
3,769,324	+				-0.2
3,769,324	+				-0.3
3,769,324	+				-2.5
3,769,332	-				-0.6
3,769,332	-				+0.6
3,769,332	-				-0.6
3,769,384	+				-0.7
3,769,442	-				-1.4
3,769,443	+				+0.3
3,769,443	+				+0.3
3,769,443	+				+0.1
3,769,443	+				-0.2
3,769,443	+				+0.0
3,769,443	+				-0.8
3,769,443	+				-1.0
3,769,443	+				+0.1
3,769,443	+				-1.0
3,769,443	+				+0.1
3,769,443	+				-0.9
3,769,443	+				+0.6
3,769,443	+				+1.3
3,769,443	+				-1.4
3,769,443	+				-0.6
3,769,443	+				-0.4
3,769,443	+				-1.0
3,769,443	+				-1.4
3,769,443	+				-0.1
3,769,443	+				-0.1
3,769,443	+				+0.1
3,769,443	+				+0.3
3,769,443	+				-0.9
3,769,443	+				+0.0
3,769,443	+				-2.4
3,769,443	+				+0.4
3,769,451	-				-0.8
3,769,451	-				-0.1
3,769,451	-				-0.2
3,769,451	-				+0.4
3,769,451	-				+0.6
3,769,451	-				-0.9
3,769,451	-				-2.0
3,769,451	-				+1.5
3,769,451	-				-0.7
3,769,451	-				-0.6
3,769,451	-				+0.5
3,769,451	-				+0.4
3,769,451	-				-0.1
3,769,451	-				-0.7
3,769,451	-				+1.6
3,769,451	-				-0.3
3,769,451	-				+1.4
3,769,451	-				+0.7
3,769,451	-				+0.4
3,769,451	-				+0.8
3,769,451	-				+1.2
3,769,451	-				+0.5
3,769,451	-				+0.8
3,769,451	-				+0.6
3,769,451	-				-0.7
3,769,451	-				-1.1
3,769,451	-				-0.4
3,769,451	-				+0.0
3,769,451	-				+0.3
3,769,451	-				-0.2
3,769,451	-				+0.7
3,769,451	-				-0.5
3,769,451	-				-0.1
3,769,451	-				+0.8
3,769,451	-				+1.9
3,769,451	-				+1.0
3,769,451	-				-0.6
3,769,451	-				+1.0
3,769,460	+				-0.4
3,769,461	+				-0.9
3,769,478	-				-0.7
3,769,479	+				-0.7
3,769,479	+				+0.1
3,769,479	+				-1.3
3,769,479	+				-0.8
3,769,482	+				-0.2
3,769,484	+				-0.1
3,769,487	+				+0.1
3,769,487	+				-0.5
3,769,489	+				-0.0
3,769,489	+				+1.4
3,769,492	-				+1.1
3,769,492	-				-1.2
3,769,495	-				+0.6
3,769,497	-				-1.7
3,769,497	-				+0.3
3,769,500	+				-0.6
3,769,512	+				+1.1
3,769,519	+				+0.6
3,769,519	+				-1.7
3,769,532	+				+0.7
3,769,539	-				-2.1
3,769,562	+				-0.4
3,769,572	-				-0.1
3,769,579	+				+0.3
3,769,582	-				+0.9
3,769,584	+				-0.2
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