Strain Fitness in Sphingobium sp. HT1-2 around GFF2483

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,505,028	+		GFF2481	0.81	-2.6
2,505,033	+		GFF2481	0.82	-2.9
2,505,036	-		GFF2481	0.82	-2.3
2,505,038	+		GFF2481	0.82	-2.1
2,505,041	-		GFF2481	0.83	-0.5
2,505,041	-		GFF2481	0.83	-0.9
2,505,043	-		GFF2481	0.83	-2.6
2,505,046	-		GFF2481	0.83	-1.5
2,505,046	-		GFF2481	0.83	-1.2
2,505,046	-		GFF2481	0.83	-2.2
2,505,060	-		GFF2481	0.85	-2.1
2,505,064	+		GFF2481	0.85	-1.7
2,505,079	+		GFF2481	0.87	-1.9
2,505,114	-				-3.2
2,505,205	+				-1.7
2,505,205	+				-1.8
2,505,213	-				+0.6
2,505,215	+				-2.2
2,505,243	+				+0.2
2,505,243	+				-0.4
2,505,243	+				+0.0
2,505,251	-				+0.0
2,505,251	-				-0.6
2,505,251	-				-1.2
2,505,272	+				+0.3
2,505,272	+				+0.1
2,505,273	-				-1.4
2,505,280	-				-1.3
2,505,280	-				+0.8
2,505,280	-				+0.2
2,505,287	-				-1.2
2,505,306	+				-0.6
2,505,306	+				-0.8
2,505,306	+				-1.9
2,505,312	+				-1.4
2,505,314	-				-0.2
2,505,314	-				-1.2
2,505,316	-				-0.6
2,505,320	-				-1.9
2,505,322	+				-0.1
2,505,322	+				-2.5
2,505,322	+				-0.3
2,505,322	+				-0.3
2,505,322	+				-0.6
2,505,322	+				+0.2
2,505,330	-				-1.4
2,505,330	-				-0.7
2,505,330	-				-1.4
2,505,385	+				+1.2
2,505,393	+				-0.9
2,505,395	-				-0.7
2,505,433	-		GFF2482	0.11	-0.1
2,505,433	-		GFF2482	0.11	-1.4
2,505,433	-		GFF2482	0.11	-0.4
2,505,433	-		GFF2482	0.11	+0.1
2,505,433	-		GFF2482	0.11	+1.2
2,505,532	+		GFF2482	0.27	-1.4
2,505,532	+		GFF2482	0.27	+0.7
2,505,540	-		GFF2482	0.28	-1.9
2,505,545	-		GFF2482	0.29	-0.5
2,505,547	-		GFF2482	0.29	-0.2
2,505,549	+		GFF2482	0.29	+0.6
2,505,557	-		GFF2482	0.31	-0.9
2,505,585	-		GFF2482	0.35	+0.3
2,505,585	-		GFF2482	0.35	-1.5
2,505,611	-		GFF2482	0.39	+0.0
2,505,613	-		GFF2482	0.40	-0.9
2,505,621	-		GFF2482	0.41	-1.5
2,505,621	-		GFF2482	0.41	-0.9
2,505,621	-		GFF2482	0.41	-0.6
2,505,621	-		GFF2482	0.41	-1.1
2,505,643	+		GFF2482	0.44	-0.6
2,505,651	-		GFF2482	0.46	+0.3
2,505,659	-		GFF2482	0.47	-1.7
2,505,673	+		GFF2482	0.49	+0.6
2,505,683	+		GFF2482	0.51	+0.2
2,505,683	+		GFF2482	0.51	-0.7
2,505,683	+		GFF2482	0.51	+0.1
2,505,691	-		GFF2482	0.52	-0.8
2,505,691	-		GFF2482	0.52	-0.6
2,505,691	-		GFF2482	0.52	-2.2
2,505,691	-		GFF2482	0.52	-0.6
2,505,691	-		GFF2482	0.52	+0.4
2,505,691	-		GFF2482	0.52	-0.4
2,505,697	-		GFF2482	0.53	-1.6
2,505,702	-		GFF2482	0.54	+0.1
2,505,702	-		GFF2482	0.54	-1.5
2,505,732	+		GFF2482	0.59	-1.6
2,505,739	+		GFF2482	0.60	-2.7
2,505,756	-		GFF2482	0.62	+0.2
2,505,805	+		GFF2482	0.70	+0.7
2,505,805	+		GFF2482	0.70	+0.9
2,505,815	+		GFF2482	0.72	+0.6
2,505,823	-		GFF2482	0.73	-1.1
2,505,823	-		GFF2482	0.73	-2.7
2,505,823	-		GFF2482	0.73	+0.6
2,505,839	+		GFF2482	0.76	+0.8
2,505,865	+		GFF2482	0.80	-1.2
2,505,865	+		GFF2482	0.80	+0.8
2,505,870	+		GFF2482	0.81	-0.0
2,505,871	+		GFF2482	0.81	+0.1
2,505,871	+		GFF2482	0.81	-0.2
2,505,871	+		GFF2482	0.81	+0.2
2,505,873	-		GFF2482	0.81	+1.0
2,505,875	+		GFF2482	0.82	-1.2
2,505,875	+		GFF2482	0.82	+0.1
2,505,914	-		GFF2482	0.88	-2.3
2,505,964	-				+0.4
2,506,008	-				-0.1
2,506,013	+				-1.5
2,506,021	-				-2.1
2,506,064	+				+0.8
2,506,095	+				-2.1
2,506,103	-		GFF2483	0.10	-0.4
2,506,146	-		GFF2483	0.16	-1.3
2,506,147	-		GFF2483	0.16	-0.9
2,506,154	+		GFF2483	0.17	-1.2
2,506,156	+		GFF2483	0.17	+0.3
2,506,196	-		GFF2483	0.22	-0.5
2,506,208	+		GFF2483	0.23	-2.4
2,506,213	+		GFF2483	0.24	+1.0
2,506,213	+		GFF2483	0.24	-2.4
2,506,216	-		GFF2483	0.24	+0.3
2,506,216	-		GFF2483	0.24	-0.9
2,506,221	-		GFF2483	0.25	-0.4
2,506,223	+		GFF2483	0.25	-0.9
2,506,231	-		GFF2483	0.26	+0.1
2,506,231	-		GFF2483	0.26	+0.3
2,506,275	+		GFF2483	0.32	+0.4
2,506,275	+		GFF2483	0.32	+0.4
2,506,283	-		GFF2483	0.33	-1.0
2,506,283	-		GFF2483	0.33	-0.1
2,506,283	-		GFF2483	0.33	-0.6
2,506,294	-		GFF2483	0.34	-0.5
2,506,294	-		GFF2483	0.34	+0.6
2,506,325	-		GFF2483	0.38	-0.6
2,506,334	+		GFF2483	0.39	-0.2
2,506,342	-		GFF2483	0.40	+2.7
2,506,365	+		GFF2483	0.43	+0.3
2,506,373	-		GFF2483	0.44	+0.3
2,506,374	-		GFF2483	0.44	-1.0
2,506,401	+		GFF2483	0.47	-0.1
2,506,409	-		GFF2483	0.48	-1.0
2,506,409	-		GFF2483	0.48	-0.0
2,506,431	+		GFF2483	0.51	-0.1
2,506,434	-		GFF2483	0.51	-0.1
2,506,436	+		GFF2483	0.52	-1.2
2,506,442	+		GFF2483	0.52	-0.0
2,506,444	-		GFF2483	0.53	-0.3
2,506,450	-		GFF2483	0.53	-0.1
2,506,483	-		GFF2483	0.57	+0.2
2,506,544	-		GFF2483	0.65	-0.0
2,506,572	-		GFF2483	0.69	-1.1
2,506,582	-		GFF2483	0.70	-0.4
2,506,582	-		GFF2483	0.70	-1.5
2,506,601	+		GFF2483	0.72	-0.0
2,506,601	+		GFF2483	0.72	+1.8
2,506,601	+		GFF2483	0.72	-0.8
2,506,606	+		GFF2483	0.73	+0.5
2,506,609	-		GFF2483	0.73	+0.6
2,506,609	-		GFF2483	0.73	-0.8
2,506,609	-		GFF2483	0.73	-0.1
2,506,625	+		GFF2483	0.75	+0.0
2,506,625	+		GFF2483	0.75	-1.6
2,506,625	+		GFF2483	0.75	+0.8
2,506,625	+		GFF2483	0.75	-0.2
2,506,625	+		GFF2483	0.75	-0.1
2,506,633	-		GFF2483	0.76	+0.1
2,506,666	+		GFF2483	0.80	+0.2
2,506,682	+		GFF2483	0.82	-0.5
2,506,698	-		GFF2483	0.84	+0.4
2,506,699	+		GFF2483	0.84	-0.6
2,506,709	+		GFF2483	0.86	+0.5
2,506,721	+		GFF2483	0.87	-1.9
2,506,728	+		GFF2483	0.88	-0.3
2,506,729	-		GFF2483	0.88	+0.1
2,506,733	+		GFF2483	0.89	+0.4
2,506,734	-		GFF2483	0.89	-0.0
2,506,734	-		GFF2483	0.89	+0.1
2,506,734	-		GFF2483	0.89	-1.7
2,506,734	-		GFF2483	0.89	+1.5
2,506,734	-		GFF2483	0.89	-1.4
2,506,734	-		GFF2483	0.89	+0.9
2,506,744	+				-0.4
2,506,744	+				+0.8
2,506,752	+				-0.0
2,506,752	+				+1.2
2,506,760	-				+0.3
2,506,768	-				-0.6
2,506,770	-				-2.0
2,506,820	+				-0.3
2,506,825	+				+0.5
2,506,825	+				+0.0
2,506,825	+				+1.1
2,506,825	+				-1.0
2,506,825	+				-0.4
2,506,825	+				-1.2
2,506,825	+				-1.5
2,506,825	+				-0.2
2,506,825	+				-0.2
2,506,825	+				-1.3
2,506,825	+				-1.7
2,506,825	+				-1.7
2,506,825	+				+0.5
2,506,825	+				+0.6
2,506,825	+				-0.1
2,506,833	-				-0.2
2,506,833	-				-0.6
2,506,833	-				+0.4
2,506,833	-				+1.5
2,506,833	-				+0.3
2,506,833	-				-0.4
2,506,833	-				-1.2
2,506,833	-				+0.1
2,506,833	-				-1.2
2,506,833	-				-1.8
2,506,833	-				+0.9
2,506,833	-				+0.9
2,506,833	-				+0.5
2,506,833	-				+0.4
2,506,833	-				+0.2
2,506,833	-				-0.2
2,506,833	-				+0.1
2,506,838	-				-1.2
2,506,887	+				+0.0
2,506,888	+				-0.8
2,506,893	+				-1.1
2,506,893	+				-1.2
2,506,901	-				+0.2
2,506,901	-				-0.0
2,506,930	+				-2.2
2,506,938	-				-0.7
2,506,938	-				-1.6
2,506,941	+				+1.0
2,506,944	+				+0.7
2,506,949	-				+0.5
2,506,953	+				-0.0
2,506,954	-				+1.0
2,506,961	-		GFF2484	0.10	-1.1
2,506,961	-		GFF2484	0.10	+0.4
2,506,969	-		GFF2484	0.11	-1.6
2,506,987	-		GFF2484	0.12	-0.9
2,506,988	+		GFF2484	0.12	-2.1
2,506,988	+		GFF2484	0.12	+1.6
2,506,988	+		GFF2484	0.12	-0.8
2,506,988	+		GFF2484	0.12	-2.0
2,506,988	+		GFF2484	0.12	-1.2
2,506,992	-		GFF2484	0.13	+1.4
2,506,993	+		GFF2484	0.13	+0.2
2,506,993	+		GFF2484	0.13	+0.3
2,506,996	-		GFF2484	0.13	-1.6
2,506,996	-		GFF2484	0.13	+0.4
2,506,996	-		GFF2484	0.13	-0.4
2,507,020	+		GFF2484	0.15	-0.1
2,507,020	+		GFF2484	0.15	-0.4
2,507,049	+		GFF2484	0.17	-2.0
2,507,054	-		GFF2484	0.17	-0.9
2,507,077	-		GFF2484	0.19	-0.5
2,507,078	+		GFF2484	0.19	-0.5
2,507,078	+		GFF2484	0.19	+1.5
2,507,080	+		GFF2484	0.19	-1.6
2,507,081	+		GFF2484	0.19	-2.0
2,507,086	-		GFF2484	0.20	+0.4
2,507,094	+		GFF2484	0.20	-1.9
2,507,124	+		GFF2484	0.23	-1.3
2,507,205	-		GFF2484	0.29	+0.5
2,507,207	+		GFF2484	0.29	+0.9
2,507,227	+		GFF2484	0.30	-1.2
2,507,241	+		GFF2484	0.31	-1.8
2,507,245	-		GFF2484	0.32	+0.1
2,507,248	+		GFF2484	0.32	+1.0
2,507,249	+		GFF2484	0.32	+0.9
2,507,249	+		GFF2484	0.32	-1.1
2,507,250	-		GFF2484	0.32	-0.2
2,507,256	-		GFF2484	0.33	-0.5
2,507,256	-		GFF2484	0.33	-0.0
2,507,257	-		GFF2484	0.33	-0.0
2,507,257	-		GFF2484	0.33	+0.6
2,507,257	-		GFF2484	0.33	-0.5
2,507,262	+		GFF2484	0.33	-0.8
2,507,280	-		GFF2484	0.34	-0.9
2,507,283	-		GFF2484	0.35	-0.6
2,507,290	+		GFF2484	0.35	-0.3
2,507,290	+		GFF2484	0.35	-2.8
2,507,290	+		GFF2484	0.35	+0.5
2,507,290	+		GFF2484	0.35	+0.8
2,507,298	-		GFF2484	0.36	-1.2
2,507,298	-		GFF2484	0.36	-0.6
2,507,298	-		GFF2484	0.36	-2.0
2,507,298	-		GFF2484	0.36	+0.0
2,507,298	-		GFF2484	0.36	+0.0
2,507,298	-		GFF2484	0.36	+0.9
2,507,298	-		GFF2484	0.36	-1.0
2,507,298	-		GFF2484	0.36	-0.1
2,507,298	-		GFF2484	0.36	-0.3
2,507,302	-		GFF2484	0.36	-0.3
2,507,305	+		GFF2484	0.36	+1.7
2,507,319	+		GFF2484	0.37	-0.5
2,507,327	-		GFF2484	0.38	-2.7
2,507,329	-		GFF2484	0.38	-0.2
2,507,340	+		GFF2484	0.39	+0.8
2,507,348	-		GFF2484	0.40	+0.3
2,507,351	+		GFF2484	0.40	-0.3
2,507,370	-		GFF2484	0.41	-0.1
2,507,373	+		GFF2484	0.41	-0.2
2,507,382	-		GFF2484	0.42	-0.4
2,507,399	+		GFF2484	0.43	+0.1
2,507,404	+		GFF2484	0.44	-0.9
2,507,419	+		GFF2484	0.45	-0.2
2,507,419	+		GFF2484	0.45	-0.0
2,507,436	+		GFF2484	0.46	+0.5
2,507,444	-		GFF2484	0.47	-2.1
2,507,451	-		GFF2484	0.47	+0.1
2,507,462	-		GFF2484	0.48	+0.0
2,507,462	-		GFF2484	0.48	+0.5
2,507,462	-		GFF2484	0.48	-0.7
2,507,485	+		GFF2484	0.50	-1.1
2,507,531	+		GFF2484	0.53	+0.2
2,507,539	-		GFF2484	0.54	+0.9
2,507,549	-		GFF2484	0.55	-0.7
2,507,562	+		GFF2484	0.56	-0.9
2,507,605	+		GFF2484	0.59	-0.1
2,507,613	-		GFF2484	0.60	-0.5
2,507,622	+		GFF2484	0.60	-0.5
2,507,648	-		GFF2484	0.62	+0.8
2,507,655	-		GFF2484	0.63	-0.6
2,507,656	-		GFF2484	0.63	-1.9
2,507,662	-		GFF2484	0.63	-0.4
2,507,668	+		GFF2484	0.64	+0.5
2,507,674	+		GFF2484	0.64	+0.8
2,507,685	-		GFF2484	0.65	+0.1
2,507,700	+		GFF2484	0.66	-0.2
2,507,714	+		GFF2484	0.67	+0.2
2,507,714	+		GFF2484	0.67	-1.8
2,507,719	+		GFF2484	0.68	-1.2
2,507,719	+		GFF2484	0.68	-0.8
2,507,722	-		GFF2484	0.68	+1.6
2,507,727	-		GFF2484	0.68	+0.2
2,507,727	-		GFF2484	0.68	-0.3
2,507,727	-		GFF2484	0.68	-0.8
2,507,727	-		GFF2484	0.68	+0.4
2,507,744	-		GFF2484	0.70	-2.2
2,507,746	-		GFF2484	0.70	-0.0
2,507,768	+		GFF2484	0.71	+0.1
2,507,777	-		GFF2484	0.72	-2.4
2,507,786	-		GFF2484	0.73	-1.0
2,507,793	-		GFF2484	0.73	+1.7
2,507,795	+		GFF2484	0.74	-0.2
2,507,795	+		GFF2484	0.74	-1.6
2,507,803	-		GFF2484	0.74	+0.3
2,507,803	-		GFF2484	0.74	+0.4
2,507,803	-		GFF2484	0.74	-0.1