Strain Fitness in Sphingobium sp. HT1-2 around GFF4473

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,465,083	+				-0.3
4,465,096	+				-1.6
4,465,130	+				+1.9
4,465,130	+				+0.1
4,465,138	-				+1.1
4,465,149	+				+0.6
4,465,157	-				+0.7
4,465,157	-				+1.2
4,465,164	+				+1.3
4,465,177	-				-0.5
4,465,183	+				+1.0
4,465,216	-				+0.5
4,465,237	+				+1.0
4,465,260	-				-0.1
4,465,270	+				-0.8
4,465,307	+				-0.3
4,465,310	-				+0.5
4,465,310	-				-0.4
4,465,326	+				-0.1
4,465,337	+				+0.3
4,465,339	+				-0.9
4,465,345	-				+0.4
4,465,345	-				+0.5
4,465,352	-				+0.7
4,465,361	+				-0.0
4,465,367	+				-1.7
4,465,369	-				+1.3
4,465,371	+				-1.1
4,465,372	+				+1.1
4,465,372	+				+0.3
4,465,372	+				+0.5
4,465,372	+				-0.3
4,465,375	-				+0.3
4,465,379	+				-2.0
4,465,380	-				+0.7
4,465,392	+				-0.3
4,465,392	+				+0.2
4,465,392	+				-0.1
4,465,392	+				+1.2
4,465,392	+				-1.3
4,465,392	+				+0.6
4,465,392	+				+1.0
4,465,392	+				+0.5
4,465,392	+				+1.2
4,465,392	+				-0.1
4,465,392	+				+0.4
4,465,392	+				+0.3
4,465,392	+				+1.3
4,465,392	+				+0.3
4,465,392	+				-0.5
4,465,392	+				-0.4
4,465,392	+				+0.1
4,465,392	+				+0.6
4,465,400	-				+0.7
4,465,400	-				-1.8
4,465,400	-				-2.3
4,465,400	-				-1.5
4,465,400	-				+0.0
4,465,400	-				+0.5
4,465,400	-				+1.0
4,465,400	-				-0.0
4,465,400	-				+0.3
4,465,400	-				-0.2
4,465,400	-				-0.0
4,465,400	-				+0.3
4,465,400	-				+0.5
4,465,400	-				-1.8
4,465,400	-				-0.1
4,465,400	-				-1.9
4,465,400	-				+0.3
4,465,400	-				-0.5
4,465,400	-				-0.5
4,465,400	-				+0.3
4,465,400	-				+0.1
4,465,412	-				+0.1
4,465,420	+				+0.5
4,465,449	+				+1.2
4,465,450	+				+1.5
4,465,450	+				-0.5
4,465,450	+				+0.2
4,465,475	+				+0.5
4,465,505	+				+0.4
4,465,515	+				+1.3
4,465,515	-				+0.5
4,465,521	+				+0.0
4,465,523	-				-0.0
4,465,535	-				-1.4
4,465,562	-				+0.4
4,465,590	-				-2.3
4,465,590	-				+1.0
4,465,610	-				-0.1
4,465,662	+				-1.3
4,465,682	+				-0.5
4,465,682	+				+0.7
4,465,688	+				-0.3
4,465,690	-				+1.0
4,465,690	-				-0.1
4,465,690	-				-0.7
4,465,692	+				-1.7
4,465,692	+				-0.9
4,465,722	-				-1.6
4,465,726	-				+1.2
4,465,726	-				+1.2
4,465,757	+				+0.9
4,465,757	+				+0.1
4,465,765	-				-1.4
4,465,770	-				-1.7
4,465,770	-				+0.9
4,465,770	-				+1.0
4,465,770	-				+0.4
4,465,779	-				+0.3
4,465,817	+				+0.5
4,465,837	+				+0.2
4,465,860	-				+0.2
4,465,880	+				+0.4
4,465,897	-				-1.4
4,465,904	+				+1.4
4,465,904	+				-0.1
4,465,905	+				-0.9
4,465,912	-				-0.4
4,465,913	-				+0.7
4,465,926	+				-1.5
4,465,926	-				+1.0
4,465,947	-				-1.6
4,465,949	+				+0.2
4,465,955	+				-0.3
4,465,955	+				+0.1
4,465,955	+				-0.7
4,465,955	+				+0.8
4,465,955	+				-1.1
4,465,955	+				-0.3
4,465,955	+				+0.4
4,465,955	+				+0.6
4,465,955	+				+1.1
4,465,957	-				+0.2
4,465,963	-				+0.6
4,465,963	-				+1.1
4,465,963	-				+0.3
4,465,963	-				+0.3
4,465,965	+				-0.1
4,465,965	+				+0.8
4,465,965	+				-0.2
4,465,965	+				+1.0
4,465,973	-				+0.3
4,465,973	-				+0.5
4,465,973	-				+0.5
4,465,973	-				-1.6
4,465,978	-				-1.6
4,465,983	-				-0.4
4,465,983	-				+0.6
4,465,996	+				+0.9
4,466,003	+				-0.8
4,466,003	+				+0.8
4,466,003	+				-0.3
4,466,003	+				+0.1
4,466,003	+				+1.0
4,466,004	-				-0.5
4,466,004	-				+1.5
4,466,004	-				+0.3
4,466,004	-				+0.6
4,466,008	+				+1.7
4,466,011	-				+1.7
4,466,011	-				-0.6
4,466,011	-				+0.9
4,466,021	-				-0.4
4,466,023	+				+0.1
4,466,023	+				+0.3
4,466,031	-				+0.9
4,466,031	-				+1.6
4,466,144	-		GFF4473	0.31	+0.5
4,466,184	+		GFF4473	0.50	-0.5
4,466,226	-		GFF4473	0.69	+0.1
4,466,226	-		GFF4473	0.69	+0.1
4,466,271	+				-0.3
4,466,271	+				+0.5
4,466,279	-				+0.1
4,466,316	+				-0.8
4,466,329	-				-0.3
4,466,343	+				+1.6
4,466,348	-				+0.2
4,466,348	-				+1.3
4,466,358	+				+0.8
4,466,358	+				-0.4
4,466,366	-				-0.5
4,466,366	-				-0.6
4,466,378	+				+0.4
4,466,444	-				-0.0
4,466,467	-		GFF4474	0.13	+0.9
4,466,470	+		GFF4474	0.13	-2.1
4,466,492	+		GFF4474	0.19	-0.0
4,466,494	+		GFF4474	0.20	+1.1
4,466,494	+		GFF4474	0.20	+0.1
4,466,502	-		GFF4474	0.22	-1.4
4,466,523	+		GFF4474	0.27	-0.4
4,466,523	+		GFF4474	0.27	-0.2
4,466,526	-		GFF4474	0.28	+0.5
4,466,531	-		GFF4474	0.29	+0.6
4,466,531	-		GFF4474	0.29	+1.2
4,466,531	-		GFF4474	0.29	-0.5
4,466,531	-		GFF4474	0.29	+1.0
4,466,575	+		GFF4474	0.40	-1.6
4,466,583	-		GFF4474	0.42	+0.1
4,466,628	+		GFF4474	0.54	-0.3
4,466,635	-		GFF4474	0.55	-0.0
4,466,652	+		GFF4474	0.60	+0.2
4,466,703	+		GFF4474	0.73	+0.7
4,466,762	+		GFF4474	0.88	-0.3
4,466,762	+		GFF4474	0.88	-1.5
4,466,762	+		GFF4474	0.88	+0.3
4,466,770	-				-0.0
4,466,775	-				-0.2
4,466,782	+				-1.5
4,466,789	+				-1.2
4,466,790	-				-3.0
4,466,790	-				+0.7
4,466,797	-				-0.5
4,466,797	-				-1.3
4,466,819	-				+1.2
4,466,819	-				-1.0
4,466,848	-				+0.7
4,466,854	-				+0.2
4,466,869	-				-0.2
4,466,905	+				-0.5
4,466,938	-				+1.9
4,466,950	+				+0.3
4,466,958	+				+0.9
4,466,958	+				+0.0
4,466,958	+				-0.6
4,467,046	-				-1.0
4,467,063	+				+0.3
4,467,068	+				-1.8
4,467,071	-				+0.4
4,467,076	-				+0.7
4,467,085	+				-0.8
4,467,093	-				+0.8
4,467,102	+				-0.0
4,467,110	-				+1.2
4,467,110	-				-0.4
4,467,110	-				+0.5
4,467,110	-				+1.5
4,467,110	-				-0.5
4,467,110	-				-0.8
4,467,110	-				-1.1
4,467,174	+		GFF4475	0.11	+0.5
4,467,180	+		GFF4475	0.11	-0.7
4,467,182	-		GFF4475	0.11	-0.6
4,467,198	+		GFF4475	0.12	-0.3
4,467,198	+		GFF4475	0.12	-0.0
4,467,198	+		GFF4475	0.12	+1.7
4,467,198	+		GFF4475	0.12	+0.3
4,467,198	+		GFF4475	0.12	+1.1
4,467,198	+		GFF4475	0.12	-0.8
4,467,198	+		GFF4475	0.12	-1.5
4,467,198	+		GFF4475	0.12	+0.8
4,467,198	+		GFF4475	0.12	+0.3
4,467,206	-		GFF4475	0.12	+0.1
4,467,206	-		GFF4475	0.12	+0.3
4,467,206	-		GFF4475	0.12	+1.1
4,467,206	-		GFF4475	0.12	+0.2
4,467,206	-		GFF4475	0.12	+0.1
4,467,206	-		GFF4475	0.12	-0.0
4,467,262	+		GFF4475	0.14	-1.8
4,467,262	-		GFF4475	0.14	-0.1
4,467,265	-		GFF4475	0.14	-1.2
4,467,270	-		GFF4475	0.14	+0.4
4,467,270	-		GFF4475	0.14	-2.1
4,467,270	-		GFF4475	0.14	-1.3
4,467,270	-		GFF4475	0.14	+0.2
4,467,275	+		GFF4475	0.14	-0.5
4,467,286	+		GFF4475	0.15	-1.5