Strain Fitness in Sphingobium sp. HT1-2 around GFF4000

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,029,453	+		GFF3998	0.46	-0.0
4,029,453	+		GFF3998	0.46	+0.1
4,029,453	+		GFF3998	0.46	-0.3
4,029,453	-		GFF3998	0.46	-0.1
4,029,453	-		GFF3998	0.46	+0.9
4,029,461	-		GFF3998	0.46	+0.9
4,029,463	-		GFF3998	0.47	+0.5
4,029,472	+		GFF3998	0.47	+0.1
4,029,489	+		GFF3998	0.49	-1.0
4,029,494	+		GFF3998	0.50	+1.1
4,029,498	-		GFF3998	0.50	-1.0
4,029,505	+		GFF3998	0.51	-2.0
4,029,561	+		GFF3998	0.56	-0.5
4,029,575	+		GFF3998	0.57	-1.3
4,029,577	+		GFF3998	0.58	-0.6
4,029,580	-		GFF3998	0.58	-0.5
4,029,582	+		GFF3998	0.58	+0.7
4,029,585	-		GFF3998	0.58	+1.3
4,029,585	-		GFF3998	0.58	+0.4
4,029,585	-		GFF3998	0.58	+0.8
4,029,585	-		GFF3998	0.58	-0.4
4,029,590	-		GFF3998	0.59	-0.6
4,029,590	-		GFF3998	0.59	+0.9
4,029,590	-		GFF3998	0.59	-0.1
4,029,592	+		GFF3998	0.59	-1.3
4,029,592	+		GFF3998	0.59	-2.2
4,029,592	+		GFF3998	0.59	-0.8
4,029,592	+		GFF3998	0.59	-0.8
4,029,597	-		GFF3998	0.59	-2.7
4,029,600	-		GFF3998	0.60	-2.6
4,029,607	-		GFF3998	0.60	-0.1
4,029,656	+		GFF3998	0.65	-0.2
4,029,666	+		GFF3998	0.66	-0.9
4,029,666	+		GFF3998	0.66	+0.5
4,029,674	-		GFF3998	0.67	-0.5
4,029,674	-		GFF3998	0.67	-1.6
4,029,674	-		GFF3998	0.67	+0.6
4,029,674	-		GFF3998	0.67	-0.6
4,029,675	-		GFF3998	0.67	+1.1
4,029,675	-		GFF3998	0.67	-1.0
4,029,707	+		GFF3998	0.70	+1.3
4,029,708	+		GFF3998	0.70	-2.0
4,029,715	-		GFF3998	0.71	-1.6
4,029,715	-		GFF3998	0.71	-1.6
4,029,715	-		GFF3998	0.71	-0.5
4,029,726	+		GFF3998	0.72	-0.1
4,029,731	+		GFF3998	0.72	-1.1
4,029,731	+		GFF3998	0.72	-1.7
4,029,731	+		GFF3998	0.72	-0.1
4,029,731	+		GFF3998	0.72	+0.9
4,029,731	+		GFF3998	0.72	+0.1
4,029,731	+		GFF3998	0.72	-1.3
4,029,731	+		GFF3998	0.72	-2.5
4,029,734	-		GFF3998	0.73	+0.7
4,029,734	-		GFF3998	0.73	+1.2
4,029,734	-		GFF3998	0.73	-0.2
4,029,734	-		GFF3998	0.73	-1.3
4,029,734	-		GFF3998	0.73	+0.3
4,029,739	-		GFF3998	0.73	-2.1
4,029,739	-		GFF3998	0.73	+0.4
4,029,739	-		GFF3998	0.73	-1.1
4,029,739	-		GFF3998	0.73	-1.7
4,029,746	-		GFF3998	0.74	+0.8
4,029,747	-		GFF3998	0.74	+0.1
4,029,754	-		GFF3998	0.75	-0.5
4,029,777	-		GFF3998	0.77	-0.5
4,029,777	-		GFF3998	0.77	-1.3
4,029,825	+		GFF3998	0.82	+0.1
4,029,833	-		GFF3998	0.82	-0.7
4,029,833	-		GFF3998	0.82	-1.6
4,029,833	-		GFF3998	0.82	-1.1
4,029,840	+		GFF3998	0.83	+0.7
4,029,842	-		GFF3998	0.83	-1.1
4,029,843	-		GFF3998	0.83	-1.7
4,029,843	-		GFF3998	0.83	-0.0
4,029,843	-		GFF3998	0.83	-0.1
4,029,848	-		GFF3998	0.84	+0.0
4,029,848	-		GFF3998	0.84	+0.3
4,029,852	-		GFF3998	0.84	+0.0
4,029,852	-		GFF3998	0.84	-2.3
4,029,865	+		GFF3998	0.85	-1.1
4,029,866	+		GFF3998	0.86	-2.2
4,029,873	-		GFF3998	0.86	-0.9
4,029,875	+		GFF3998	0.86	-0.8
4,029,875	-		GFF3998	0.86	-2.1
4,029,877	+		GFF3998	0.87	+0.9
4,029,877	+		GFF3998	0.87	+0.1
4,029,877	+		GFF3998	0.87	+1.1
4,029,881	-		GFF3998	0.87	-0.4
4,029,897	+		GFF3998	0.89	+0.0
4,029,897	+		GFF3998	0.89	-0.6
4,029,897	+		GFF3998	0.89	+0.4
4,029,900	-		GFF3998	0.89	+0.3
4,029,900	-		GFF3998	0.89	-0.1
4,029,905	-		GFF3998	0.89	+0.9
4,029,905	-		GFF3998	0.89	+0.1
4,029,905	-		GFF3998	0.89	+0.1
4,029,905	-		GFF3998	0.89	-0.8
4,029,905	-		GFF3998	0.89	+0.1
4,029,912	-				-0.6
4,029,912	-				-0.3
4,029,916	+				-0.1
4,029,916	+				+0.1
4,029,916	+				+0.7
4,029,919	-				+0.1
4,029,924	+				-0.9
4,029,924	-				-0.4
4,029,924	-				+0.9
4,029,932	-				-1.5
4,029,932	-				+0.2
4,029,932	-				-1.0
4,029,934	+				+0.3
4,029,972	+				+1.0
4,030,011	-				+0.1
4,030,020	+				-1.0
4,030,076	+				+0.3
4,030,076	+				+0.9
4,030,076	+				-2.5
4,030,084	-				+0.8
4,030,084	-				+0.3
4,030,084	-				-0.3
4,030,084	-				-0.7
4,030,084	-				+0.5
4,030,084	-				+0.2
4,030,121	+		GFF3999	0.18	+2.6
4,030,121	+		GFF3999	0.18	-1.5
4,030,144	+		GFF3999	0.24	-0.4
4,030,152	-		GFF3999	0.26	+1.0
4,030,172	+		GFF3999	0.31	-0.5
4,030,172	+		GFF3999	0.31	+0.1
4,030,172	+		GFF3999	0.31	-0.8
4,030,174	+		GFF3999	0.32	-1.6
4,030,180	-		GFF3999	0.33	-1.7
4,030,182	+		GFF3999	0.34	-0.3
4,030,182	+		GFF3999	0.34	-0.0
4,030,190	-		GFF3999	0.36	-0.4
4,030,193	+		GFF3999	0.36	+1.3
4,030,195	-		GFF3999	0.37	-1.0
4,030,201	-		GFF3999	0.38	-0.2
4,030,210	+		GFF3999	0.41	-0.3
4,030,228	+		GFF3999	0.45	-0.6
4,030,228	+		GFF3999	0.45	-0.3
4,030,228	+		GFF3999	0.45	-1.0
4,030,228	+		GFF3999	0.45	-1.0
4,030,228	+		GFF3999	0.45	-1.4
4,030,228	+		GFF3999	0.45	-1.6
4,030,236	-		GFF3999	0.47	-0.2
4,030,236	-		GFF3999	0.47	+0.9
4,030,236	-		GFF3999	0.47	+0.5
4,030,236	-		GFF3999	0.47	+0.0
4,030,236	-		GFF3999	0.47	-2.0
4,030,254	+		GFF3999	0.52	-0.8
4,030,262	+		GFF3999	0.54	-1.4
4,030,262	+		GFF3999	0.54	-2.9
4,030,262	-		GFF3999	0.54	+0.2
4,030,264	+		GFF3999	0.54	+0.1
4,030,270	-		GFF3999	0.56	-0.5
4,030,272	+		GFF3999	0.56	-0.7
4,030,272	+		GFF3999	0.56	-0.1
4,030,280	-		GFF3999	0.58	+1.2
4,030,280	-		GFF3999	0.58	-2.7
4,030,280	-		GFF3999	0.58	-1.2
4,030,280	-		GFF3999	0.58	+0.2
4,030,282	+		GFF3999	0.59	-3.0
4,030,327	+		GFF3999	0.70	+0.5
4,030,329	-		GFF3999	0.70	-2.0
4,030,344	-		GFF3999	0.74	-0.6
4,030,349	-		GFF3999	0.75	-0.3
4,030,380	+		GFF3999	0.83	-1.1
4,030,380	+		GFF3999	0.83	+0.1
4,030,380	+		GFF3999	0.83	-1.0
4,030,383	-		GFF3999	0.84	+0.4
4,030,388	+		GFF3999	0.85	-0.1
4,030,393	+		GFF3999	0.86	-1.4
4,030,394	+		GFF3999	0.87	-0.5
4,030,398	+		GFF3999	0.88	-1.5
4,030,435	+				+0.3
4,030,457	+				-1.6
4,030,462	-				+1.2
4,030,467	+				-1.1
4,030,469	-				+1.5
4,030,481	+				-0.2
4,030,489	-				-1.6
4,030,489	-				-1.6
4,030,538	+		GFF4000	0.17	-0.7
4,030,546	-		GFF4000	0.18	+0.1
4,030,546	-		GFF4000	0.18	-0.4
4,030,557	+		GFF4000	0.20	+0.1
4,030,563	-		GFF4000	0.21	-0.5
4,030,563	-		GFF4000	0.21	-0.8
4,030,567	-		GFF4000	0.22	-0.7
4,030,601	+		GFF4000	0.29	-0.4
4,030,601	+		GFF4000	0.29	+0.0
4,030,601	+		GFF4000	0.29	+0.9
4,030,604	+		GFF4000	0.29	+0.1
4,030,609	-		GFF4000	0.30	-2.0
4,030,609	-		GFF4000	0.30	-2.5
4,030,609	-		GFF4000	0.30	+0.8
4,030,609	-		GFF4000	0.30	-1.5
4,030,619	-		GFF4000	0.32	+0.1
4,030,626	+		GFF4000	0.33	+1.1
4,030,629	-		GFF4000	0.34	-0.3
4,030,649	+		GFF4000	0.37	-0.1
4,030,649	+		GFF4000	0.37	-0.5
4,030,649	+		GFF4000	0.37	-1.5
4,030,649	+		GFF4000	0.37	-0.8
4,030,649	+		GFF4000	0.37	-1.5
4,030,649	+		GFF4000	0.37	+0.2
4,030,652	-		GFF4000	0.38	-0.0
4,030,657	-		GFF4000	0.39	+0.1
4,030,657	-		GFF4000	0.39	-0.4
4,030,657	-		GFF4000	0.39	-0.1
4,030,657	-		GFF4000	0.39	+0.3
4,030,666	-		GFF4000	0.41	-0.2
4,030,700	+		GFF4000	0.47	-1.1
4,030,705	+		GFF4000	0.48	-1.0
4,030,705	+		GFF4000	0.48	+0.8
4,030,713	-		GFF4000	0.49	+0.7
4,030,720	+		GFF4000	0.51	+0.8
4,030,728	-		GFF4000	0.52	-1.0
4,030,759	+		GFF4000	0.58	-0.4
4,030,767	-		GFF4000	0.59	-0.1
4,030,783	-		GFF4000	0.62	+0.1
4,030,785	+		GFF4000	0.63	+0.1
4,030,785	+		GFF4000	0.63	-0.3
4,030,785	+		GFF4000	0.63	+0.4
4,030,785	+		GFF4000	0.63	-0.9
4,030,785	+		GFF4000	0.63	-1.2
4,030,785	+		GFF4000	0.63	+0.1
4,030,793	-		GFF4000	0.64	+1.4
4,030,793	-		GFF4000	0.64	-0.7
4,030,793	-		GFF4000	0.64	+0.9
4,030,793	-		GFF4000	0.64	+0.8
4,030,793	-		GFF4000	0.64	+1.2
4,030,793	-		GFF4000	0.64	+0.6
4,030,793	-		GFF4000	0.64	+0.3
4,030,793	-		GFF4000	0.64	-1.9
4,030,793	-		GFF4000	0.64	-0.3
4,030,793	-		GFF4000	0.64	-0.4
4,030,811	+		GFF4000	0.67	+1.1
4,030,819	-		GFF4000	0.69	+0.7
4,030,819	-		GFF4000	0.69	+0.9
4,030,852	+		GFF4000	0.75	-0.5
4,030,852	+		GFF4000	0.75	-0.3
4,030,860	-		GFF4000	0.76	+1.1
4,030,860	-		GFF4000	0.76	+0.7
4,030,880	+		GFF4000	0.80	-0.1
4,030,880	+		GFF4000	0.80	-0.2
4,030,881	+		GFF4000	0.80	-0.5
4,030,887	-		GFF4000	0.81	-0.2
4,030,888	-		GFF4000	0.82	+0.3
4,030,888	-		GFF4000	0.82	-0.7
4,030,908	+		GFF4000	0.85	-0.3
4,030,908	+		GFF4000	0.85	+0.4
4,030,916	-		GFF4000	0.87	+0.5
4,030,918	+		GFF4000	0.87	+0.4
4,030,918	-		GFF4000	0.87	-1.6
4,030,926	-		GFF4000	0.89	-0.2
4,030,935	-				+0.9
4,030,943	-				+0.1
4,030,951	+				-1.2
4,030,954	+				+0.3
4,030,959	-				-0.3
4,030,977	-				-0.0
4,030,984	+				-1.1
4,030,986	+				+0.9
4,030,998	+				+0.9
4,031,006	-				+0.4
4,031,031	+				+0.6
4,031,040	+				+0.1
4,031,041	+				-0.6
4,031,059	+				-1.5
4,031,104	+		GFF4001	0.10	-0.2
4,031,108	+		GFF4001	0.11	+1.0
4,031,126	-		GFF4001	0.13	-1.0
4,031,135	+		GFF4001	0.13	+0.5
4,031,143	+		GFF4001	0.14	+0.2
4,031,160	+		GFF4001	0.16	+0.0
4,031,168	-		GFF4001	0.17	-0.0
4,031,207	+		GFF4001	0.21	-1.0
4,031,242	+		GFF4001	0.25	+0.4
4,031,254	+		GFF4001	0.26	+0.5
4,031,259	+		GFF4001	0.27	+1.0
4,031,259	+		GFF4001	0.27	+0.4
4,031,259	+		GFF4001	0.27	-1.8
4,031,262	-		GFF4001	0.27	-1.5
4,031,262	-		GFF4001	0.27	-1.6
4,031,262	-		GFF4001	0.27	-0.3
4,031,262	-		GFF4001	0.27	-1.0
4,031,262	-		GFF4001	0.27	+0.4
4,031,262	-		GFF4001	0.27	+0.5
4,031,262	-		GFF4001	0.27	+1.3
4,031,267	-		GFF4001	0.28	-0.4
4,031,267	-		GFF4001	0.28	-0.7
4,031,267	-		GFF4001	0.28	-0.4
4,031,267	-		GFF4001	0.28	+1.0
4,031,267	-		GFF4001	0.28	-1.5
4,031,267	-		GFF4001	0.28	+1.8
4,031,267	-		GFF4001	0.28	+0.7
4,031,303	+		GFF4001	0.32	+0.4
4,031,303	+		GFF4001	0.32	+0.1
4,031,311	-		GFF4001	0.32	-0.6
4,031,326	+		GFF4001	0.34	-1.6
4,031,334	-		GFF4001	0.35	+0.3
4,031,378	-		GFF4001	0.40	+0.5
4,031,378	-		GFF4001	0.40	+0.1
4,031,396	-		GFF4001	0.42	-0.4
4,031,407	+		GFF4001	0.43	-1.8
4,031,407	+		GFF4001	0.43	-0.3
4,031,407	+		GFF4001	0.43	-1.9
4,031,407	+		GFF4001	0.43	+0.2
4,031,407	+		GFF4001	0.43	+0.5
4,031,412	+		GFF4001	0.43	+0.3
4,031,412	+		GFF4001	0.43	+0.4
4,031,412	+		GFF4001	0.43	-1.3
4,031,412	+		GFF4001	0.43	-1.8
4,031,415	-		GFF4001	0.44	+1.0
4,031,415	-		GFF4001	0.44	+0.1
4,031,417	+		GFF4001	0.44	+0.7
4,031,417	+		GFF4001	0.44	-0.8
4,031,420	-		GFF4001	0.44	-0.5
4,031,420	-		GFF4001	0.44	-0.6
4,031,420	-		GFF4001	0.44	-0.3
4,031,425	-		GFF4001	0.45	+1.0
4,031,428	-		GFF4001	0.45	-1.0
4,031,431	+		GFF4001	0.45	+0.5
4,031,431	+		GFF4001	0.45	-0.2
4,031,436	-		GFF4001	0.46	+0.1
4,031,439	-		GFF4001	0.46	-1.3
4,031,444	+		GFF4001	0.47	-0.4
4,031,452	-		GFF4001	0.48	+0.1
4,031,452	-		GFF4001	0.48	+0.2
4,031,462	-		GFF4001	0.49	-0.6
4,031,473	+		GFF4001	0.50	+1.0
4,031,483	+		GFF4001	0.51	-1.1
4,031,493	+		GFF4001	0.52	-0.9
4,031,493	+		GFF4001	0.52	+0.1
4,031,517	-		GFF4001	0.55	-1.1
4,031,550	+		GFF4001	0.58	-1.5
4,031,555	+		GFF4001	0.59	+1.0
4,031,556	+		GFF4001	0.59	+0.6
4,031,567	-		GFF4001	0.60	+1.1
4,031,574	+		GFF4001	0.61	+0.3
4,031,574	+		GFF4001	0.61	-1.1
4,031,574	+		GFF4001	0.61	+0.7
4,031,577	-		GFF4001	0.61	+1.0
4,031,582	-		GFF4001	0.62	-0.0
4,031,587	-		GFF4001	0.62	-1.3
4,031,606	+		GFF4001	0.64	-1.7
4,031,607	-		GFF4001	0.64	-1.6
4,031,608	+		GFF4001	0.65	+0.2
4,031,614	-		GFF4001	0.65	+1.2
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