Strain Fitness in Sphingobium sp. HT1-2 around GFF3781

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,821,785	+				+0.4
3,821,785	+				+0.3
3,821,793	-				-1.2
3,821,793	-				-1.4
3,821,811	+				-0.4
3,821,819	-				+0.8
3,821,840	+				+0.1
3,821,840	+				-0.0
3,821,840	+				-0.3
3,821,840	+				+0.3
3,821,840	+				+0.3
3,821,840	+				-1.5
3,821,840	+				-1.9
3,821,840	+				-0.7
3,821,840	+				+0.6
3,821,840	+				-0.9
3,821,840	+				-0.1
3,821,840	+				-1.0
3,821,840	+				-1.3
3,821,840	+				+0.1
3,821,843	-				-1.9
3,821,848	-				-0.4
3,821,848	-				-1.2
3,821,848	-				-2.6
3,821,848	-				-2.1
3,821,848	-				-1.8
3,821,848	-				+1.1
3,821,848	-				+0.5
3,821,895	-				-0.9
3,821,901	+				-0.7
3,821,901	+				-0.1
3,821,912	+				-0.4
3,821,925	+				+0.3
3,821,959	+				-0.0
3,821,959	+				-0.4
3,821,959	+				-0.1
3,821,964	+				+0.3
3,821,967	-				-0.4
3,821,967	-				+1.4
3,821,967	-				-1.3
3,821,976	-				-0.2
3,821,980	+				-0.2
3,821,992	+				-0.6
3,822,016	+		GFF3780	0.12	+0.0
3,822,016	+		GFF3780	0.12	-1.1
3,822,024	-		GFF3780	0.13	-2.0
3,822,026	-		GFF3780	0.14	+0.5
3,822,030	+		GFF3780	0.14	+0.7
3,822,030	+		GFF3780	0.14	-1.0
3,822,030	+		GFF3780	0.14	-1.6
3,822,030	+		GFF3780	0.14	+0.2
3,822,030	+		GFF3780	0.14	+1.2
3,822,030	+		GFF3780	0.14	+0.6
3,822,030	+		GFF3780	0.14	+0.7
3,822,038	+		GFF3780	0.15	+0.5
3,822,038	+		GFF3780	0.15	-1.0
3,822,038	+		GFF3780	0.15	-2.3
3,822,038	-		GFF3780	0.15	-0.9
3,822,038	-		GFF3780	0.15	-0.6
3,822,038	-		GFF3780	0.15	-1.1
3,822,038	-		GFF3780	0.15	-1.5
3,822,038	-		GFF3780	0.15	-0.3
3,822,038	-		GFF3780	0.15	-0.9
3,822,038	-		GFF3780	0.15	-1.4
3,822,038	-		GFF3780	0.15	+0.0
3,822,038	-		GFF3780	0.15	-2.0
3,822,055	+		GFF3780	0.17	-1.6
3,822,055	+		GFF3780	0.17	-1.1
3,822,055	+		GFF3780	0.17	-1.6
3,822,055	+		GFF3780	0.17	+0.7
3,822,055	+		GFF3780	0.17	-0.3
3,822,055	+		GFF3780	0.17	-1.7
3,822,056	-		GFF3780	0.17	-2.1
3,822,063	-		GFF3780	0.18	-0.6
3,822,063	-		GFF3780	0.18	+1.7
3,822,063	-		GFF3780	0.18	-1.7
3,822,063	-		GFF3780	0.18	-0.5
3,822,065	+		GFF3780	0.18	-0.3
3,822,068	-		GFF3780	0.19	-1.1
3,822,073	-		GFF3780	0.19	+0.3
3,822,073	-		GFF3780	0.19	-0.4
3,822,073	-		GFF3780	0.19	-0.8
3,822,073	-		GFF3780	0.19	+0.6
3,822,078	-		GFF3780	0.20	+0.1
3,822,094	-		GFF3780	0.22	-0.0
3,822,096	+		GFF3780	0.22	-2.3
3,822,096	+		GFF3780	0.22	+0.1
3,822,096	+		GFF3780	0.22	-0.8
3,822,097	+		GFF3780	0.22	-1.2
3,822,105	+		GFF3780	0.23	+0.8
3,822,119	-		GFF3780	0.25	+0.3
3,822,119	-		GFF3780	0.25	-0.8
3,822,119	-		GFF3780	0.25	+0.4
3,822,126	-		GFF3780	0.26	+0.3
3,822,127	-		GFF3780	0.26	+0.1
3,822,127	-		GFF3780	0.26	-1.5
3,822,147	-		GFF3780	0.29	+0.2
3,822,162	-		GFF3780	0.30	+0.7
3,822,178	+		GFF3780	0.32	+0.2
3,822,183	-		GFF3780	0.33	+0.6
3,822,183	-		GFF3780	0.33	+0.5
3,822,188	-		GFF3780	0.34	+0.6
3,822,199	-		GFF3780	0.35	+0.6
3,822,202	+		GFF3780	0.35	-0.5
3,822,210	-		GFF3780	0.36	-2.1
3,822,210	-		GFF3780	0.36	-1.1
3,822,222	+		GFF3780	0.38	-0.9
3,822,222	+		GFF3780	0.38	-0.2
3,822,230	-		GFF3780	0.39	-0.4
3,822,232	+		GFF3780	0.39	-0.2
3,822,232	+		GFF3780	0.39	+0.4
3,822,232	+		GFF3780	0.39	+1.2
3,822,232	+		GFF3780	0.39	+0.8
3,822,232	+		GFF3780	0.39	-1.5
3,822,232	+		GFF3780	0.39	+0.1
3,822,235	-		GFF3780	0.39	+0.3
3,822,235	-		GFF3780	0.39	+2.3
3,822,240	-		GFF3780	0.40	+0.6
3,822,248	-		GFF3780	0.41	+0.1
3,822,248	-		GFF3780	0.41	-0.8
3,822,290	+		GFF3780	0.46	-0.6
3,822,291	+		GFF3780	0.46	-1.4
3,822,306	-		GFF3780	0.48	-0.4
3,822,307	-		GFF3780	0.48	-1.7
3,822,319	+		GFF3780	0.50	-0.3
3,822,319	+		GFF3780	0.50	-0.4
3,822,319	+		GFF3780	0.50	+0.7
3,822,319	+		GFF3780	0.50	+0.5
3,822,324	+		GFF3780	0.50	+0.7
3,822,325	+		GFF3780	0.51	-2.1
3,822,325	-		GFF3780	0.51	+0.7
3,822,327	-		GFF3780	0.51	+0.3
3,822,327	-		GFF3780	0.51	-1.8
3,822,327	-		GFF3780	0.51	-1.6
3,822,327	-		GFF3780	0.51	+0.7
3,822,329	+		GFF3780	0.51	-0.2
3,822,332	-		GFF3780	0.51	+1.7
3,822,333	-		GFF3780	0.52	-0.0
3,822,333	-		GFF3780	0.52	-1.6
3,822,382	+		GFF3780	0.58	-0.5
3,822,401	+		GFF3780	0.60	+1.0
3,822,401	+		GFF3780	0.60	-0.8
3,822,401	+		GFF3780	0.60	+1.4
3,822,401	+		GFF3780	0.60	-2.1
3,822,401	+		GFF3780	0.60	-0.6
3,822,401	+		GFF3780	0.60	+0.2
3,822,409	-		GFF3780	0.61	-0.3
3,822,409	-		GFF3780	0.61	-2.0
3,822,409	-		GFF3780	0.61	-1.5
3,822,409	-		GFF3780	0.61	-2.1
3,822,409	-		GFF3780	0.61	+0.5
3,822,409	-		GFF3780	0.61	+0.1
3,822,409	-		GFF3780	0.61	+0.3
3,822,409	-		GFF3780	0.61	+1.2
3,822,414	-		GFF3780	0.62	+1.9
3,822,417	+		GFF3780	0.62	-1.6
3,822,417	+		GFF3780	0.62	-1.3
3,822,419	+		GFF3780	0.62	-0.5
3,822,419	+		GFF3780	0.62	+0.2
3,822,419	+		GFF3780	0.62	-0.6
3,822,419	+		GFF3780	0.62	+0.3
3,822,419	+		GFF3780	0.62	-0.0
3,822,426	-		GFF3780	0.63	-2.1
3,822,437	+		GFF3780	0.64	-0.7
3,822,437	-		GFF3780	0.64	+0.5
3,822,481	+		GFF3780	0.70	-0.2
3,822,481	+		GFF3780	0.70	-0.0
3,822,487	+		GFF3780	0.71	-1.2
3,822,489	+		GFF3780	0.71	-0.1
3,822,495	-		GFF3780	0.72	-0.5
3,822,495	-		GFF3780	0.72	+0.1
3,822,511	+		GFF3780	0.74	-0.2
3,822,513	-		GFF3780	0.74	+0.2
3,822,519	-		GFF3780	0.75	+0.6
3,822,519	-		GFF3780	0.75	-0.3
3,822,524	+		GFF3780	0.75	+1.3
3,822,532	-		GFF3780	0.76	-1.0
3,822,534	+		GFF3780	0.76	-0.0
3,822,542	-		GFF3780	0.77	-1.6
3,822,542	-		GFF3780	0.77	-1.8
3,822,544	+		GFF3780	0.78	+0.8
3,822,590	+		GFF3780	0.83	-0.3
3,822,592	-		GFF3780	0.84	-1.4
3,822,597	-		GFF3780	0.84	-0.3
3,822,615	+		GFF3780	0.86	+0.1
3,822,628	+		GFF3780	0.88	+0.4
3,822,642	+		GFF3780	0.90	-0.0
3,822,644	-				-0.8
3,822,670	+				-0.6
3,822,670	+				-0.0
3,822,678	-				+0.1
3,822,700	-				-0.4
3,822,708	+				+0.2
3,822,716	-				-1.2
3,822,717	+				+0.7
3,822,717	+				-0.1
3,822,724	+				+0.7
3,822,724	+				+0.3
3,822,724	+				-0.8
3,822,725	-				-0.2
3,822,725	-				+0.3
3,822,725	-				+2.2
3,822,732	-				-0.9
3,822,733	-				+0.9
3,822,736	+				-1.1
3,822,736	+				-0.2
3,822,744	-				-0.3
3,822,782	+				+0.0
3,822,783	+				+0.7
3,822,791	-				-0.9
3,822,821	-				-0.8
3,822,833	-				+0.1
3,822,833	-				-1.3
3,822,854	+				+1.5
3,822,859	+				+0.6
3,822,859	+				-0.5
3,822,864	-				+0.1
3,822,869	+				-0.1
3,822,892	+				-2.5
3,822,893	+				+0.6
3,822,909	-		GFF3781	0.11	-1.1
3,822,909	-		GFF3781	0.11	+0.4
3,822,920	+		GFF3781	0.12	-1.5
3,822,928	+		GFF3781	0.12	-0.6
3,822,928	+		GFF3781	0.12	-1.3
3,822,955	+		GFF3781	0.15	-2.8
3,822,959	-		GFF3781	0.15	-0.9
3,822,959	-		GFF3781	0.15	-0.9
3,822,966	+		GFF3781	0.16	-0.3
3,822,966	+		GFF3781	0.16	-1.5
3,822,974	+		GFF3781	0.16	+0.6
3,822,974	-		GFF3781	0.16	-0.5
3,823,000	-		GFF3781	0.19	-0.1
3,823,000	-		GFF3781	0.19	+0.5
3,823,018	+		GFF3781	0.20	+0.6
3,823,018	+		GFF3781	0.20	-2.5
3,823,036	-		GFF3781	0.22	+0.4
3,823,037	-		GFF3781	0.22	-0.6
3,823,037	-		GFF3781	0.22	-1.4
3,823,037	-		GFF3781	0.22	+0.0
3,823,047	+		GFF3781	0.23	-1.4
3,823,049	+		GFF3781	0.23	+0.1
3,823,069	+		GFF3781	0.25	-0.3
3,823,072	-		GFF3781	0.25	-0.3
3,823,077	-		GFF3781	0.25	-1.8
3,823,079	-		GFF3781	0.26	+0.2
3,823,089	+		GFF3781	0.26	-1.8
3,823,092	+		GFF3781	0.27	-0.7
3,823,092	+		GFF3781	0.27	-0.0
3,823,098	+		GFF3781	0.27	+0.4
3,823,100	-		GFF3781	0.27	-2.3
3,823,100	-		GFF3781	0.27	-1.1
3,823,100	-		GFF3781	0.27	+0.3
3,823,106	-		GFF3781	0.28	+1.8
3,823,116	-		GFF3781	0.29	+0.1
3,823,178	-		GFF3781	0.34	-0.7
3,823,185	+		GFF3781	0.35	+0.2
3,823,185	+		GFF3781	0.35	-0.8
3,823,185	+		GFF3781	0.35	-2.5
3,823,185	+		GFF3781	0.35	+0.2
3,823,185	+		GFF3781	0.35	-0.4
3,823,185	+		GFF3781	0.35	-0.2
3,823,185	+		GFF3781	0.35	-0.3
3,823,185	+		GFF3781	0.35	+0.5
3,823,185	+		GFF3781	0.35	+0.6
3,823,185	+		GFF3781	0.35	+1.0
3,823,193	-		GFF3781	0.36	+0.2
3,823,193	-		GFF3781	0.36	+0.3
3,823,193	-		GFF3781	0.36	-0.8
3,823,193	-		GFF3781	0.36	+0.3
3,823,193	-		GFF3781	0.36	-2.1
3,823,193	-		GFF3781	0.36	-2.3
3,823,193	-		GFF3781	0.36	-0.5
3,823,193	-		GFF3781	0.36	+0.3
3,823,193	-		GFF3781	0.36	-0.8
3,823,193	-		GFF3781	0.36	-0.1
3,823,198	-		GFF3781	0.36	+1.2
3,823,198	-		GFF3781	0.36	+1.2
3,823,230	+		GFF3781	0.39	-0.3
3,823,238	-		GFF3781	0.39	+0.1
3,823,238	-		GFF3781	0.39	-0.3
3,823,246	+		GFF3781	0.40	+1.5
3,823,247	+		GFF3781	0.40	-1.1
3,823,254	-		GFF3781	0.41	+0.4
3,823,255	-		GFF3781	0.41	-0.4
3,823,279	-		GFF3781	0.43	+0.4
3,823,291	-		GFF3781	0.44	-0.4
3,823,293	+		GFF3781	0.44	+0.2
3,823,318	+		GFF3781	0.46	+0.7
3,823,347	-		GFF3781	0.49	+0.2
3,823,358	+		GFF3781	0.50	-0.5
3,823,365	+		GFF3781	0.50	-0.4
3,823,366	-		GFF3781	0.51	+1.9
3,823,366	-		GFF3781	0.51	-0.1
3,823,393	+		GFF3781	0.53	+0.3
3,823,397	-		GFF3781	0.53	-1.6
3,823,401	-		GFF3781	0.54	+0.1
3,823,414	+		GFF3781	0.55	-0.0
3,823,422	-		GFF3781	0.55	+0.0
3,823,422	-		GFF3781	0.55	-0.1
3,823,422	-		GFF3781	0.55	+0.1
3,823,425	+		GFF3781	0.56	+0.1
3,823,428	+		GFF3781	0.56	-1.1
3,823,437	-		GFF3781	0.57	+0.5
3,823,446	-		GFF3781	0.58	+0.1
3,823,448	+		GFF3781	0.58	+0.8
3,823,448	+		GFF3781	0.58	-1.0
3,823,456	-		GFF3781	0.58	+1.8
3,823,469	+		GFF3781	0.60	-0.1
3,823,476	-		GFF3781	0.60	-1.2
3,823,478	+		GFF3781	0.60	-0.9
3,823,478	+		GFF3781	0.60	+0.1
3,823,486	-		GFF3781	0.61	-0.2
3,823,496	-		GFF3781	0.62	-1.0
3,823,548	-		GFF3781	0.66	-0.5
3,823,551	+		GFF3781	0.67	-1.2
3,823,568	-		GFF3781	0.68	-0.6
3,823,597	-		GFF3781	0.71	-1.6
3,823,597	-		GFF3781	0.71	+0.7
3,823,611	-		GFF3781	0.72	+0.2
3,823,617	+		GFF3781	0.72	+1.1
3,823,617	+		GFF3781	0.72	-1.4
3,823,620	-		GFF3781	0.73	+0.1
3,823,625	-		GFF3781	0.73	+0.7
3,823,625	-		GFF3781	0.73	-0.9
3,823,625	-		GFF3781	0.73	+0.7
3,823,626	+		GFF3781	0.73	-0.0
3,823,634	-		GFF3781	0.74	+0.4
3,823,634	-		GFF3781	0.74	+0.2
3,823,634	-		GFF3781	0.74	+0.3
3,823,650	-		GFF3781	0.75	-0.7
3,823,655	-		GFF3781	0.76	+0.9
3,823,655	-		GFF3781	0.76	-0.3
3,823,689	+		GFF3781	0.79	-1.0
3,823,689	+		GFF3781	0.79	-0.8
3,823,689	+		GFF3781	0.79	-0.9
3,823,697	-		GFF3781	0.79	+0.4
3,823,697	-		GFF3781	0.79	+0.5
3,823,697	-		GFF3781	0.79	-0.3
3,823,699	+		GFF3781	0.80	-1.0
3,823,704	+		GFF3781	0.80	+0.8
3,823,704	+		GFF3781	0.80	+0.7
3,823,704	+		GFF3781	0.80	-0.9
3,823,712	-		GFF3781	0.81	-0.8
3,823,712	-		GFF3781	0.81	+0.4
3,823,712	-		GFF3781	0.81	-1.3
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3,823,795	-		GFF3781	0.88	-1.1
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3,823,827	+				-0.3
3,823,832	+				+0.6
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3,823,835	-				-0.6
3,823,835	-				-1.0
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3,823,835	-				-1.2
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3,823,840	-				+0.7
3,823,840	-				-0.5
3,823,840	-				-0.7
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3,823,853	-				-0.3
3,823,879	-				-0.7
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3,823,921	+				-1.8
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3,823,929	-				-1.7
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3,823,947	+				+0.4
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3,823,955	-				+0.5
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3,823,984	+				+1.0
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3,823,997	-				+0.8
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3,824,022	-				-3.1
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3,824,038	+				+0.4
3,824,038	+				-1.8
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3,824,059	+				+0.4
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3,824,101	-				-1.7
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3,824,121	+				-0.4
3,824,121	+				+1.0
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3,824,124	-				-2.0
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3,824,129	-				-1.6
3,824,129	-				-2.5
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3,824,129	-				-1.3
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3,824,153	+				+1.3
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3,824,622	+		GFF3782	0.63	+1.0
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