Strain Fitness in Sphingobium sp. HT1-2 around GFF3698

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,741,822	-		GFF3697	0.35	-2.3
3,741,846	+		GFF3697	0.37	-1.3
3,741,846	+		GFF3697	0.37	-2.9
3,741,846	+		GFF3697	0.37	-1.6
3,741,846	+		GFF3697	0.37	-0.0
3,741,846	+		GFF3697	0.37	-2.4
3,741,854	-		GFF3697	0.38	-3.1
3,741,854	-		GFF3697	0.38	-1.3
3,741,869	+		GFF3697	0.39	-2.8
3,741,893	+		GFF3697	0.41	-2.6
3,741,895	+		GFF3697	0.41	-2.8
3,741,948	+		GFF3697	0.46	-0.6
3,741,950	+		GFF3697	0.46	-1.3
3,741,951	+		GFF3697	0.46	-1.5
3,741,956	+		GFF3697	0.46	-1.7
3,741,956	+		GFF3697	0.46	-1.7
3,741,956	+		GFF3697	0.46	-1.5
3,741,956	+		GFF3697	0.46	-2.0
3,741,956	-		GFF3697	0.46	-1.3
3,741,956	-		GFF3697	0.46	-0.5
3,741,959	-		GFF3697	0.47	-2.9
3,741,966	-		GFF3697	0.47	-3.6
3,741,969	-		GFF3697	0.47	-3.3
3,741,975	+		GFF3697	0.48	-1.9
3,741,983	-		GFF3697	0.49	-2.5
3,741,983	-		GFF3697	0.49	-2.3
3,741,983	-		GFF3697	0.49	-2.0
3,741,983	-		GFF3697	0.49	-1.7
3,741,991	-		GFF3697	0.49	-1.9
3,742,013	-		GFF3697	0.51	-1.0
3,742,050	-		GFF3697	0.54	-0.5
3,742,051	+		GFF3697	0.54	-0.9
3,742,107	+		GFF3697	0.59	-1.4
3,742,126	-		GFF3697	0.60	-1.6
3,742,130	+		GFF3697	0.61	-0.4
3,742,130	+		GFF3697	0.61	-1.9
3,742,130	+		GFF3697	0.61	-1.3
3,742,172	-		GFF3697	0.64	-1.4
3,742,174	+		GFF3697	0.64	-1.8
3,742,174	+		GFF3697	0.64	-1.7
3,742,181	-		GFF3697	0.65	-2.2
3,742,185	+		GFF3697	0.65	-2.3
3,742,186	-		GFF3697	0.65	-1.6
3,742,193	-		GFF3697	0.66	-1.5
3,742,193	-		GFF3697	0.66	-1.4
3,742,233	-		GFF3697	0.69	-1.3
3,742,246	+		GFF3697	0.70	-2.2
3,742,251	-		GFF3697	0.71	-2.4
3,742,253	-		GFF3697	0.71	-1.1
3,742,267	+		GFF3697	0.72	-2.1
3,742,267	+		GFF3697	0.72	-1.1
3,742,277	+		GFF3697	0.73	-2.5
3,742,277	+		GFF3697	0.73	-2.0
3,742,277	+		GFF3697	0.73	-0.3
3,742,277	+		GFF3697	0.73	-2.6
3,742,277	+		GFF3697	0.73	-2.6
3,742,277	+		GFF3697	0.73	-1.1
3,742,285	-		GFF3697	0.73	-2.0
3,742,285	-		GFF3697	0.73	-3.1
3,742,285	-		GFF3697	0.73	-1.3
3,742,285	-		GFF3697	0.73	-2.2
3,742,288	+		GFF3697	0.74	-2.6
3,742,340	+		GFF3697	0.78	-3.2
3,742,343	+		GFF3697	0.78	-2.6
3,742,348	-		GFF3697	0.78	-1.6
3,742,348	-		GFF3697	0.78	-1.2
3,742,358	+		GFF3697	0.79	-2.0
3,742,366	-		GFF3697	0.80	-0.8
3,742,379	+		GFF3697	0.81	-2.4
3,742,387	-		GFF3697	0.82	-2.7
3,742,387	-		GFF3697	0.82	-1.9
3,742,439	+		GFF3697	0.86	-2.3
3,742,439	+		GFF3697	0.86	-2.0
3,742,439	+		GFF3697	0.86	-2.4
3,742,444	-		GFF3697	0.86	-2.4
3,742,445	+		GFF3697	0.86	-2.6
3,742,447	-		GFF3697	0.87	-1.8
3,742,447	-		GFF3697	0.87	-2.7
3,742,447	-		GFF3697	0.87	-1.8
3,742,470	+		GFF3697	0.88	-0.3
3,742,482	+		GFF3697	0.89	-0.8
3,742,492	+				-0.7
3,742,492	-				-0.5
3,742,499	+				-2.2
3,742,507	+				-1.7
3,742,508	-				-2.1
3,742,515	-				-1.6
3,742,528	+				-2.2
3,742,528	+				-0.2
3,742,528	+				-2.0
3,742,528	+				-2.3
3,742,528	+				-1.2
3,742,528	+				-0.7
3,742,528	+				-0.7
3,742,536	-				-1.6
3,742,536	-				-1.3
3,742,536	-				-1.4
3,742,536	-				-1.8
3,742,536	-				-2.7
3,742,536	-				-1.8
3,742,536	-				-1.6
3,742,546	-				-1.9
3,742,551	+				+1.6
3,742,553	-				-0.5
3,742,569	-				-2.7
3,742,597	-				+0.1
3,742,620	+				+1.1
3,742,620	+				-1.5
3,742,620	+				-1.7
3,742,620	+				+0.1
3,742,628	+				-1.0
3,742,636	-				-0.8
3,742,638	+				-1.6
3,742,640	+				-1.4
3,742,640	+				-0.3
3,742,640	+				-2.0
3,742,646	-				+0.4
3,742,646	-				-2.5
3,742,648	-				-0.2
3,742,661	+				+0.8
3,742,661	+				-0.2
3,742,705	+				-1.9
3,742,710	+				-0.3
3,742,713	-				-0.9
3,742,713	-				-0.9
3,742,716	+				+0.7
3,742,718	+				-0.0
3,742,731	+				-0.6
3,742,731	+				+0.2
3,742,731	+				-0.7
3,742,739	-				-1.5
3,742,753	+				-0.0
3,742,754	+				+1.0
3,742,762	-				-0.1
3,742,763	-				+1.4
3,742,768	-				-0.5
3,742,772	+				-0.2
3,742,784	-				+0.0
3,742,784	-				+0.1
3,742,802	+				-0.7
3,742,802	+				-0.7
3,742,802	+				-1.3
3,742,810	-				+0.9
3,742,810	-				+1.3
3,742,810	-				+1.0
3,742,810	-				+1.0
3,742,810	-				-0.7
3,742,841	+				-0.5
3,742,856	-				-1.4
3,742,856	-				+0.1
3,742,859	+				+1.1
3,742,871	+				-0.7
3,742,873	+				-0.6
3,742,880	+		GFF3698	0.11	+0.3
3,742,881	-		GFF3698	0.11	-0.2
3,742,890	+		GFF3698	0.12	-0.3
3,742,898	+		GFF3698	0.14	-1.0
3,742,898	+		GFF3698	0.14	-1.6
3,742,898	+		GFF3698	0.14	-0.5
3,742,898	-		GFF3698	0.14	-1.9
3,742,906	-		GFF3698	0.15	+0.6
3,742,906	-		GFF3698	0.15	-1.9
3,742,913	+		GFF3698	0.16	+0.1
3,742,953	+		GFF3698	0.22	+0.2
3,742,961	-		GFF3698	0.23	+0.3
3,742,970	+		GFF3698	0.24	-1.2
3,742,978	-		GFF3698	0.25	-0.8
3,742,983	-		GFF3698	0.26	+0.8
3,742,998	-		GFF3698	0.28	-0.2
3,742,998	-		GFF3698	0.28	-1.2
3,743,008	-		GFF3698	0.30	-0.5
3,743,010	+		GFF3698	0.30	-0.3
3,743,018	-		GFF3698	0.31	-0.5
3,743,045	-		GFF3698	0.35	+1.2
3,743,045	-		GFF3698	0.35	-0.6
3,743,047	-		GFF3698	0.36	+0.5
3,743,107	-		GFF3698	0.45	-0.2
3,743,113	+		GFF3698	0.46	+0.2
3,743,121	-		GFF3698	0.47	+1.0
3,743,121	-		GFF3698	0.47	-0.0
3,743,126	-		GFF3698	0.47	-0.5
3,743,128	+		GFF3698	0.48	+0.3
3,743,133	+		GFF3698	0.49	-0.2
3,743,133	+		GFF3698	0.49	-0.9
3,743,149	-		GFF3698	0.51	-0.4
3,743,152	-		GFF3698	0.51	-0.2
3,743,176	-		GFF3698	0.55	-1.5
3,743,176	-		GFF3698	0.55	-0.2
3,743,202	-		GFF3698	0.59	-0.3
3,743,205	+		GFF3698	0.59	-0.6
3,743,205	+		GFF3698	0.59	+0.3
3,743,205	+		GFF3698	0.59	+0.9
3,743,213	-		GFF3698	0.60	-1.4
3,743,213	-		GFF3698	0.60	-1.3
3,743,216	+		GFF3698	0.61	+0.1
3,743,234	-		GFF3698	0.64	+0.4
3,743,245	+		GFF3698	0.65	-0.7
3,743,271	-		GFF3698	0.69	-0.1
3,743,295	+		GFF3698	0.73	-1.1
3,743,300	+		GFF3698	0.73	+0.0
3,743,303	-		GFF3698	0.74	-0.3
3,743,303	-		GFF3698	0.74	-1.5
3,743,307	+		GFF3698	0.74	-0.8
3,743,307	+		GFF3698	0.74	+0.1
3,743,307	+		GFF3698	0.74	+0.8
3,743,308	-		GFF3698	0.75	-0.5
3,743,315	-		GFF3698	0.76	-0.3
3,743,315	-		GFF3698	0.76	+0.0
3,743,315	-		GFF3698	0.76	-0.9
3,743,315	-		GFF3698	0.76	-0.8
3,743,315	-		GFF3698	0.76	+1.2
3,743,315	-		GFF3698	0.76	-1.2
3,743,360	-		GFF3698	0.82	-0.3
3,743,364	+		GFF3698	0.83	-0.9
3,743,364	+		GFF3698	0.83	-2.3
3,743,364	+		GFF3698	0.83	+0.8
3,743,364	+		GFF3698	0.83	-0.4
3,743,364	+		GFF3698	0.83	-1.1
3,743,371	+		GFF3698	0.84	-0.6
3,743,372	-		GFF3698	0.84	-1.4
3,743,372	-		GFF3698	0.84	-1.1
3,743,372	-		GFF3698	0.84	-0.3
3,743,405	-		GFF3698	0.89	-1.0
3,743,411	-				+0.7
3,743,432	+				+0.2
3,743,439	-				-0.3
3,743,482	+				+0.3
3,743,543	+				+1.5
3,743,557	+				+0.6
3,743,557	+				+0.8
3,743,566	-				-0.4
3,743,581	-				-1.2
3,743,582	+				-0.0
3,743,583	+				+0.4
3,743,590	-				-0.2
3,743,590	-				+0.6
3,743,590	-				+0.1
3,743,590	-				+1.1
3,743,590	-				-1.4
3,743,612	+				-1.1
3,743,616	+				+0.2
3,743,620	+				-0.1
3,743,620	-				+1.4
3,743,685	-				+0.7
3,743,708	-		GFF3699	0.12	+1.2
3,743,735	-		GFF3699	0.16	+0.3
3,743,767	-		GFF3699	0.21	+1.1
3,743,775	+		GFF3699	0.22	+0.7
3,743,777	-		GFF3699	0.22	+0.3
3,743,800	+		GFF3699	0.25	-0.1
3,743,805	+		GFF3699	0.26	-2.3
3,743,813	-		GFF3699	0.27	-0.5
3,743,841	+		GFF3699	0.31	+0.2
3,743,860	-		GFF3699	0.34	-0.1
3,743,876	-		GFF3699	0.36	-0.5
3,743,876	-		GFF3699	0.36	-1.1
3,743,876	-		GFF3699	0.36	+0.3
3,743,877	+		GFF3699	0.36	-0.8
3,743,903	-		GFF3699	0.40	-0.1
3,743,931	-		GFF3699	0.43	-1.8
3,743,931	-		GFF3699	0.43	-1.0
3,743,931	-		GFF3699	0.43	-0.9
3,743,939	-		GFF3699	0.45	+0.6
3,743,967	-		GFF3699	0.48	-0.4
3,743,972	-		GFF3699	0.49	-1.1
3,744,023	+		GFF3699	0.56	-0.1
3,744,023	+		GFF3699	0.56	+0.4
3,744,023	+		GFF3699	0.56	+0.6
3,744,023	+		GFF3699	0.56	-0.5
3,744,023	+		GFF3699	0.56	+0.5
3,744,023	+		GFF3699	0.56	-1.2
3,744,031	-		GFF3699	0.57	-0.1
3,744,031	-		GFF3699	0.57	-0.3
3,744,031	-		GFF3699	0.57	+1.1
3,744,031	-		GFF3699	0.57	-0.5
3,744,031	-		GFF3699	0.57	+0.2
3,744,046	+		GFF3699	0.59	-0.4
3,744,078	-		GFF3699	0.64	-1.4
3,744,122	+		GFF3699	0.70	+0.1
3,744,122	+		GFF3699	0.70	-0.3
3,744,124	-		GFF3699	0.70	-0.4
3,744,154	+		GFF3699	0.74	-0.4
3,744,160	-		GFF3699	0.75	-1.1
3,744,172	+		GFF3699	0.77	+0.2
3,744,172	+		GFF3699	0.77	+0.6
3,744,177	+		GFF3699	0.78	+0.8
3,744,177	+		GFF3699	0.78	-0.1
3,744,177	+		GFF3699	0.78	+0.4
3,744,177	+		GFF3699	0.78	-0.0
3,744,178	-		GFF3699	0.78	+1.4
3,744,182	+		GFF3699	0.78	-0.4
3,744,182	+		GFF3699	0.78	-0.3
3,744,182	+		GFF3699	0.78	-0.0
3,744,182	+		GFF3699	0.78	+0.1
3,744,185	-		GFF3699	0.79	-1.6
3,744,185	-		GFF3699	0.79	-0.8
3,744,188	-		GFF3699	0.79	-0.4
3,744,190	-		GFF3699	0.79	-0.9
3,744,204	+		GFF3699	0.81	-0.4
3,744,211	-		GFF3699	0.82	+0.2
3,744,239	-		GFF3699	0.86	-0.5
3,744,276	-				-1.4
3,744,280	+				+0.4
3,744,280	+				-2.1
3,744,280	+				+0.1
3,744,280	+				-0.3
3,744,280	+				-1.4
3,744,280	+				-0.3
3,744,280	+				-1.4
3,744,280	+				-1.7
3,744,280	+				+0.8
3,744,280	+				+0.2
3,744,280	+				-0.5
3,744,280	+				-1.0
3,744,280	+				+1.2
3,744,280	+				+0.6
3,744,280	+				-1.1
3,744,280	+				+1.1
3,744,280	+				-1.2
3,744,280	+				-1.4
3,744,280	+				+0.3
3,744,280	+				-0.1
3,744,280	+				+0.6
3,744,280	+				-1.0
3,744,280	+				-0.1
3,744,280	+				+0.3
3,744,280	+				-0.5
3,744,280	+				-1.3
3,744,285	+				+0.3
3,744,288	-				-0.3
3,744,288	-				+0.3
3,744,288	-				-2.4
3,744,288	-				-1.9
3,744,288	-				+0.4
3,744,288	-				+0.2
3,744,288	-				-0.4
3,744,288	-				+0.3
3,744,288	-				-0.3
3,744,288	-				-1.6
3,744,288	-				-0.7
3,744,288	-				-1.4
3,744,288	-				+0.6
3,744,288	-				-0.2
3,744,288	-				-0.3
3,744,289	+				-1.6
3,744,301	+				+0.4
3,744,303	+				-0.5
3,744,303	+				-0.6
3,744,311	-				+1.0
3,744,311	-				-0.3
3,744,311	-				-0.8
3,744,311	-				+0.3
3,744,315	+				-1.6
3,744,322	+				+0.6
3,744,322	+				-0.2
3,744,325	-				-2.3
3,744,330	-				-1.3
3,744,332	+				+0.2
3,744,340	-				-0.4
3,744,340	-				+0.6
3,744,375	+				-0.4
3,744,392	+				+1.3
3,744,402	+				-0.9
3,744,410	-				+1.1
3,744,410	-				+0.2
3,744,410	-				-0.9
3,744,436	-				-0.8
3,744,455	-				-1.1
3,744,465	-				-0.7
3,744,476	+		GFF3700	0.10	+0.1