Strain Fitness in Sphingobium sp. HT1-2 around GFF3420

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,459,813	+		GFF3418	0.73	+0.7
3,459,841	+		GFF3418	0.76	+1.0
3,459,841	+		GFF3418	0.76	-0.3
3,459,841	+		GFF3418	0.76	-0.1
3,459,841	+		GFF3418	0.76	+0.3
3,459,841	+		GFF3418	0.76	-0.1
3,459,841	+		GFF3418	0.76	+0.0
3,459,841	+		GFF3418	0.76	-2.1
3,459,841	+		GFF3418	0.76	-1.7
3,459,844	-		GFF3418	0.76	-0.8
3,459,846	+		GFF3418	0.77	+0.1
3,459,846	+		GFF3418	0.77	-0.2
3,459,849	-		GFF3418	0.77	-1.6
3,459,849	-		GFF3418	0.77	-1.0
3,459,849	-		GFF3418	0.77	+1.4
3,459,849	-		GFF3418	0.77	-0.3
3,459,849	-		GFF3418	0.77	+0.0
3,459,851	+		GFF3418	0.77	+0.4
3,459,856	+		GFF3418	0.78	+0.9
3,459,859	-		GFF3418	0.78	-1.5
3,459,864	-		GFF3418	0.78	-0.5
3,459,910	+		GFF3418	0.83	-0.2
3,459,918	-		GFF3418	0.84	-0.0
3,459,918	-		GFF3418	0.84	+0.5
3,459,918	-		GFF3418	0.84	+0.0
3,459,944	-		GFF3418	0.87	-1.3
3,459,960	+		GFF3418	0.89	-0.3
3,459,970	-		GFF3418	0.90	+0.6
3,459,975	+				+0.8
3,459,980	+				-0.2
3,459,994	+				+0.1
3,459,994	+				-1.1
3,459,999	+				-0.3
3,459,999	+				-1.7
3,459,999	+				-1.8
3,460,001	+				+1.1
3,460,002	-				+0.5
3,460,019	+				-1.4
3,460,019	+				+0.8
3,460,027	-				-1.2
3,460,052	+				+1.8
3,460,060	-				+0.8
3,460,060	-				-0.6
3,460,060	-				+0.8
3,460,063	-				-0.3
3,460,070	-				-1.3
3,460,092	-				-0.1
3,460,096	-				-0.2
3,460,120	-				-0.3
3,460,228	+				+0.2
3,460,228	+				-0.8
3,460,231	-				-0.2
3,460,233	+				+0.8
3,460,236	-				-1.3
3,460,236	-				+0.7
3,460,236	-				+0.4
3,460,268	+				+0.2
3,460,650	+				-1.0
3,460,658	-				+0.1
3,460,658	-				+0.4
3,460,658	-				+0.0
3,460,658	-				-0.6
3,460,658	-				-0.8
3,460,706	-				+1.1
3,460,721	+				-0.0
3,460,731	-				-1.8
3,460,731	-				+0.8
3,460,748	+				+0.1
3,460,762	-				+0.1
3,460,788	-				+0.9
3,460,842	-		GFF3420	0.12	-0.9
3,460,851	+		GFF3420	0.13	-0.7
3,460,851	+		GFF3420	0.13	+0.8
3,460,851	+		GFF3420	0.13	+0.6
3,460,859	-		GFF3420	0.15	+1.3
3,460,859	-		GFF3420	0.15	+0.8
3,460,859	-		GFF3420	0.15	-0.1
3,460,859	-		GFF3420	0.15	-0.4
3,460,874	+		GFF3420	0.18	-0.5
3,460,880	-		GFF3420	0.19	-0.9
3,460,885	-		GFF3420	0.20	-0.9
3,460,885	-		GFF3420	0.20	-1.8
3,460,892	+		GFF3420	0.21	-0.6
3,460,892	+		GFF3420	0.21	+1.3
3,460,892	+		GFF3420	0.21	-0.2
3,460,892	+		GFF3420	0.21	+0.2
3,460,892	+		GFF3420	0.21	-1.0
3,460,892	+		GFF3420	0.21	+0.3
3,460,900	-		GFF3420	0.23	+0.3
3,460,900	-		GFF3420	0.23	+0.7
3,460,910	+		GFF3420	0.25	-0.5
3,460,910	+		GFF3420	0.25	+1.0
3,460,910	+		GFF3420	0.25	-0.1
3,460,910	+		GFF3420	0.25	+0.6
3,460,910	+		GFF3420	0.25	+0.4
3,460,910	+		GFF3420	0.25	-0.6
3,460,910	+		GFF3420	0.25	-0.3
3,460,913	-		GFF3420	0.25	-1.6
3,460,915	+		GFF3420	0.26	-1.1
3,460,915	+		GFF3420	0.26	-2.0
3,460,915	+		GFF3420	0.26	-0.3
3,460,915	+		GFF3420	0.26	-1.3
3,460,918	-		GFF3420	0.26	+0.6
3,460,918	-		GFF3420	0.26	-0.7
3,460,918	-		GFF3420	0.26	+1.2
3,460,923	-		GFF3420	0.27	-0.6
3,460,923	-		GFF3420	0.27	-1.0
3,460,928	-		GFF3420	0.28	-0.3
3,460,930	+		GFF3420	0.29	-1.1
3,460,930	+		GFF3420	0.29	+0.6
3,460,940	+		GFF3420	0.31	+0.9
3,460,947	-		GFF3420	0.32	-1.7
3,460,947	-		GFF3420	0.32	+1.0
3,460,958	+		GFF3420	0.34	-1.0
3,460,958	+		GFF3420	0.34	+0.9
3,460,958	+		GFF3420	0.34	-0.3
3,460,958	+		GFF3420	0.34	-0.3
3,460,958	+		GFF3420	0.34	-0.1
3,460,966	-		GFF3420	0.36	-0.6
3,460,966	-		GFF3420	0.36	+0.6
3,460,966	-		GFF3420	0.36	-0.1
3,460,983	+		GFF3420	0.39	+0.4
3,460,991	-		GFF3420	0.40	+0.7
3,461,011	+		GFF3420	0.44	+0.1
3,461,011	+		GFF3420	0.44	+0.5
3,461,019	-		GFF3420	0.46	+0.1
3,461,034	-		GFF3420	0.49	-0.6
3,461,045	+		GFF3420	0.51	+1.7
3,461,045	+		GFF3420	0.51	+0.7
3,461,047	+		GFF3420	0.51	+0.0
3,461,055	-		GFF3420	0.53	+0.7
3,461,079	+		GFF3420	0.57	+0.4
3,461,079	+		GFF3420	0.57	+0.6
3,461,082	-		GFF3420	0.58	-1.4
3,461,107	+		GFF3420	0.63	+0.8
3,461,110	-		GFF3420	0.63	-0.1
3,461,110	-		GFF3420	0.63	+0.1
3,461,115	-		GFF3420	0.64	+0.4
3,461,115	-		GFF3420	0.64	-1.5
3,461,115	-		GFF3420	0.64	+0.6
3,461,117	+		GFF3420	0.65	-0.4
3,461,125	-		GFF3420	0.66	-1.1
3,461,194	-		GFF3420	0.80	-1.6
3,461,196	+		GFF3420	0.80	+0.4
3,461,196	+		GFF3420	0.80	-0.7
3,461,196	+		GFF3420	0.80	+0.4
3,461,196	+		GFF3420	0.80	+0.4
3,461,196	+		GFF3420	0.80	+0.7
3,461,199	-		GFF3420	0.81	+0.2
3,461,199	-		GFF3420	0.81	+0.2
3,461,199	-		GFF3420	0.81	+0.7
3,461,204	-		GFF3420	0.82	-0.5
3,461,204	-		GFF3420	0.82	-2.7
3,461,204	-		GFF3420	0.82	+1.0
3,461,204	-		GFF3420	0.82	-0.3
3,461,222	+		GFF3420	0.85	+0.7
3,461,237	+		GFF3420	0.88	-1.9
3,461,245	-		GFF3420	0.89	-0.3
3,461,293	+				-1.9
3,461,293	+				+0.1
3,461,293	+				-0.3
3,461,293	+				-1.5
3,461,301	-				-2.6
3,461,301	-				-2.0
3,461,345	-				-0.6
3,461,494	-		GFF3421	0.25	-1.3
3,461,499	+		GFF3421	0.26	-0.0
3,461,503	-		GFF3421	0.27	+0.2
3,461,507	-		GFF3421	0.28	+0.3
3,461,563	+		GFF3421	0.37	-1.1
3,461,577	+		GFF3421	0.40	+0.4
3,461,577	+		GFF3421	0.40	+0.6
3,461,577	+		GFF3421	0.40	+0.7
3,461,580	+		GFF3421	0.40	+0.6
3,461,585	-		GFF3421	0.41	+0.6
3,461,585	-		GFF3421	0.41	-0.7
3,461,585	-		GFF3421	0.41	+0.6
3,461,585	-		GFF3421	0.41	-0.0
3,461,625	+		GFF3421	0.48	+1.0
3,461,638	-		GFF3421	0.51	-0.2
3,461,648	+		GFF3421	0.52	-0.7
3,461,662	+		GFF3421	0.55	+0.8
3,461,666	+		GFF3421	0.56	-1.2
3,461,681	+		GFF3421	0.58	-0.8
3,461,701	-		GFF3421	0.62	-1.1
3,461,703	-		GFF3421	0.62	+0.1
3,461,713	+		GFF3421	0.64	-0.7
3,461,721	-		GFF3421	0.65	+0.3
3,461,723	+		GFF3421	0.66	-0.2
3,461,724	+		GFF3421	0.66	-1.2
3,461,732	-		GFF3421	0.67	+0.9
3,461,736	+		GFF3421	0.68	+0.0
3,461,736	+		GFF3421	0.68	+0.3
3,461,736	+		GFF3421	0.68	-0.0
3,461,736	+		GFF3421	0.68	-1.4
3,461,744	-		GFF3421	0.69	+0.1
3,461,744	-		GFF3421	0.69	+0.5
3,461,744	-		GFF3421	0.69	-1.0
3,461,744	-		GFF3421	0.69	-0.3
3,461,755	+		GFF3421	0.71	-0.9
3,461,763	-		GFF3421	0.73	-1.5
3,461,773	-		GFF3421	0.74	-0.9
3,461,775	+		GFF3421	0.75	-0.5
3,461,775	+		GFF3421	0.75	+0.4
3,461,779	-		GFF3421	0.75	+1.1
3,461,806	+		GFF3421	0.80	-1.0
3,461,823	+		GFF3421	0.83	+1.0
3,461,823	+		GFF3421	0.83	+0.3
3,461,823	+		GFF3421	0.83	-1.0
3,461,825	-		GFF3421	0.84	-2.3
3,461,831	+		GFF3421	0.85	+0.0
3,461,831	-		GFF3421	0.85	+0.3
3,461,831	-		GFF3421	0.85	-1.1
3,461,838	+		GFF3421	0.86	-0.2
3,461,838	+		GFF3421	0.86	+0.2
3,461,839	-		GFF3421	0.86	-0.2
3,461,842	+		GFF3421	0.87	-0.1
3,461,851	-		GFF3421	0.88	+0.3
3,461,856	-		GFF3421	0.89	+0.6
3,461,864	-				+0.2
3,461,870	+				-1.4
3,461,887	-				-0.4
3,461,893	-				+0.8
3,461,910	-				+0.7
3,461,920	-				-0.0
3,461,930	-				-1.7
3,461,936	+				+1.0
3,461,941	+				-0.3
3,461,949	-				-2.0
3,461,954	-				+0.4
3,461,976	-		GFF3422	0.10	+0.1
3,462,014	+		GFF3422	0.16	+0.0
3,462,019	+		GFF3422	0.17	-0.7
3,462,022	-		GFF3422	0.18	+0.6
3,462,022	-		GFF3422	0.18	-0.4
3,462,027	-		GFF3422	0.18	-2.7
3,462,027	-		GFF3422	0.18	-0.6
3,462,027	-		GFF3422	0.18	+0.4
3,462,027	-		GFF3422	0.18	-1.6
3,462,034	+		GFF3422	0.20	+0.4
3,462,040	-		GFF3422	0.21	-0.3
3,462,042	+		GFF3422	0.21	-0.1
3,462,060	+		GFF3422	0.24	-0.3
3,462,068	-		GFF3422	0.25	-1.9
3,462,068	-		GFF3422	0.25	-1.7
3,462,068	-		GFF3422	0.25	-0.3
3,462,068	-		GFF3422	0.25	-0.2
3,462,071	+		GFF3422	0.26	-0.2
3,462,071	+		GFF3422	0.26	-0.2
3,462,071	+		GFF3422	0.26	+0.0
3,462,075	+		GFF3422	0.26	-0.7
3,462,083	-		GFF3422	0.28	+1.1
3,462,117	-		GFF3422	0.33	+0.6
3,462,141	+		GFF3422	0.37	-0.2
3,462,146	+		GFF3422	0.38	+0.6
3,462,146	+		GFF3422	0.38	-0.3
3,462,185	+		GFF3422	0.44	+0.3
3,462,185	+		GFF3422	0.44	+1.1
3,462,200	-		GFF3422	0.47	-0.3
3,462,202	+		GFF3422	0.47	+0.2
3,462,202	+		GFF3422	0.47	+1.2
3,462,210	-		GFF3422	0.48	-0.1
3,462,210	-		GFF3422	0.48	+0.6
3,462,210	-		GFF3422	0.48	+0.1
3,462,220	+		GFF3422	0.50	-0.4
3,462,220	-		GFF3422	0.50	-1.7
3,462,228	+		GFF3422	0.51	+1.3
3,462,228	-		GFF3422	0.51	+1.0
3,462,236	-		GFF3422	0.53	-1.3
3,462,244	-		GFF3422	0.54	-0.3
3,462,248	+		GFF3422	0.55	+0.1
3,462,248	+		GFF3422	0.55	+0.6
3,462,248	+		GFF3422	0.55	+0.3
3,462,249	+		GFF3422	0.55	+0.4
3,462,253	+		GFF3422	0.55	-1.2
3,462,256	-		GFF3422	0.56	-1.4
3,462,261	-		GFF3422	0.57	-0.0
3,462,261	-		GFF3422	0.57	-2.9
3,462,262	+		GFF3422	0.57	+0.0
3,462,270	-		GFF3422	0.58	-0.7
3,462,270	-		GFF3422	0.58	-0.1
3,462,295	-		GFF3422	0.62	-0.3