Strain Fitness in Sphingobium sp. HT1-2 around GFF3385

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,424,020	+				+0.8
3,424,028	+				+0.6
3,424,028	-				+0.4
3,424,028	-				+0.0
3,424,028	-				+0.1
3,424,097	+				-0.1
3,424,132	-				+0.2
3,424,139	-				-0.2
3,424,169	+		GFF3384	0.12	+1.1
3,424,177	+		GFF3384	0.13	+0.4
3,424,177	-		GFF3384	0.13	+0.6
3,424,185	+		GFF3384	0.14	-0.3
3,424,190	+		GFF3384	0.14	-0.4
3,424,196	-		GFF3384	0.15	-0.9
3,424,217	+		GFF3384	0.17	+0.7
3,424,217	+		GFF3384	0.17	+0.0
3,424,217	+		GFF3384	0.17	-1.4
3,424,217	+		GFF3384	0.17	-1.2
3,424,225	-		GFF3384	0.18	-1.2
3,424,225	-		GFF3384	0.18	+0.6
3,424,225	-		GFF3384	0.18	+1.1
3,424,225	-		GFF3384	0.18	+0.9
3,424,225	-		GFF3384	0.18	+1.9
3,424,225	-		GFF3384	0.18	+1.3
3,424,225	-		GFF3384	0.18	+0.1
3,424,300	+		GFF3384	0.26	+0.2
3,424,300	+		GFF3384	0.26	+1.3
3,424,300	+		GFF3384	0.26	-0.0
3,424,300	+		GFF3384	0.26	-1.6
3,424,300	+		GFF3384	0.26	+0.9
3,424,307	+		GFF3384	0.27	-0.3
3,424,308	-		GFF3384	0.27	-2.2
3,424,308	-		GFF3384	0.27	+0.4
3,424,317	+		GFF3384	0.28	-0.1
3,424,319	+		GFF3384	0.28	+0.7
3,424,319	+		GFF3384	0.28	+1.5
3,424,319	+		GFF3384	0.28	-2.3
3,424,319	+		GFF3384	0.28	+1.1
3,424,319	+		GFF3384	0.28	-0.3
3,424,325	-		GFF3384	0.29	+0.3
3,424,327	-		GFF3384	0.29	-0.7
3,424,327	-		GFF3384	0.29	+0.7
3,424,360	-		GFF3384	0.32	-0.1
3,424,376	+		GFF3384	0.34	+0.1
3,424,376	+		GFF3384	0.34	+1.4
3,424,376	+		GFF3384	0.34	-0.3
3,424,376	+		GFF3384	0.34	+0.2
3,424,376	+		GFF3384	0.34	-0.9
3,424,376	+		GFF3384	0.34	-0.3
3,424,376	+		GFF3384	0.34	+0.8
3,424,376	+		GFF3384	0.34	-0.6
3,424,376	+		GFF3384	0.34	+0.1
3,424,376	+		GFF3384	0.34	-0.6
3,424,376	+		GFF3384	0.34	+1.1
3,424,376	+		GFF3384	0.34	+1.6
3,424,376	+		GFF3384	0.34	+1.0
3,424,376	+		GFF3384	0.34	+0.7
3,424,376	+		GFF3384	0.34	+1.0
3,424,376	+		GFF3384	0.34	+1.6
3,424,376	+		GFF3384	0.34	+1.1
3,424,376	+		GFF3384	0.34	+0.9
3,424,376	+		GFF3384	0.34	+1.0
3,424,376	+		GFF3384	0.34	-1.3
3,424,378	+		GFF3384	0.34	-0.5
3,424,383	+		GFF3384	0.35	-0.0
3,424,384	-		GFF3384	0.35	+1.4
3,424,384	-		GFF3384	0.35	+0.8
3,424,384	-		GFF3384	0.35	+0.7
3,424,384	-		GFF3384	0.35	+0.3
3,424,384	-		GFF3384	0.35	+1.1
3,424,384	-		GFF3384	0.35	-0.3
3,424,384	-		GFF3384	0.35	+0.3
3,424,384	-		GFF3384	0.35	+1.4
3,424,384	-		GFF3384	0.35	+1.4
3,424,384	-		GFF3384	0.35	+0.6
3,424,384	-		GFF3384	0.35	+0.3
3,424,384	-		GFF3384	0.35	+2.0
3,424,384	-		GFF3384	0.35	-0.5
3,424,384	-		GFF3384	0.35	+0.9
3,424,384	-		GFF3384	0.35	-0.2
3,424,404	+		GFF3384	0.37	-0.6
3,424,404	+		GFF3384	0.37	+0.3
3,424,404	+		GFF3384	0.37	+0.3
3,424,412	-		GFF3384	0.38	-0.1
3,424,469	-		GFF3384	0.44	+1.1
3,424,479	+		GFF3384	0.45	+1.4
3,424,501	-		GFF3384	0.47	+1.1
3,424,515	+		GFF3384	0.49	-1.2
3,424,521	-		GFF3384	0.49	+0.1
3,424,530	-		GFF3384	0.50	+0.8
3,424,537	+		GFF3384	0.51	-1.2
3,424,537	+		GFF3384	0.51	+0.8
3,424,540	-		GFF3384	0.51	+1.0
3,424,545	-		GFF3384	0.52	+0.7
3,424,545	-		GFF3384	0.52	+1.6
3,424,559	-		GFF3384	0.53	+0.8
3,424,566	+		GFF3384	0.54	+1.0
3,424,579	+		GFF3384	0.55	+0.4
3,424,597	+		GFF3384	0.57	-1.8
3,424,597	+		GFF3384	0.57	-1.4
3,424,630	+		GFF3384	0.61	+0.3
3,424,670	-		GFF3384	0.65	-0.2
3,424,672	-		GFF3384	0.65	+0.1
3,424,674	+		GFF3384	0.65	+0.3
3,424,677	-		GFF3384	0.66	+1.1
3,424,687	-		GFF3384	0.67	+0.1
3,424,714	+		GFF3384	0.70	-0.7
3,424,715	-		GFF3384	0.70	+0.1
3,424,762	-		GFF3384	0.75	-1.3
3,424,778	+		GFF3384	0.76	-0.1
3,424,778	-		GFF3384	0.76	-0.3
3,424,779	-		GFF3384	0.76	+0.6
3,424,801	+		GFF3384	0.79	+0.1
3,424,801	+		GFF3384	0.79	+1.8
3,424,809	-		GFF3384	0.79	-1.6
3,424,830	+		GFF3384	0.82	+0.4
3,424,837	+		GFF3384	0.82	-0.4
3,424,837	+		GFF3384	0.82	-1.3
3,424,837	+		GFF3384	0.82	-0.2
3,424,848	+		GFF3384	0.84	+0.6
3,424,876	+		GFF3384	0.87	-0.1
3,424,876	-		GFF3384	0.87	+0.7
3,424,956	-				+1.5
3,424,977	+				+1.1
3,425,005	-				+0.1
3,425,006	+				+0.1
3,425,006	+				-1.8
3,425,011	+				+0.4
3,425,058	+				+1.3
3,425,064	+				-1.2
3,425,072	-				+0.8
3,425,089	+				-0.7
3,425,089	+				-0.6
3,425,094	+				+0.7
3,425,094	+				+1.3
3,425,097	-				+0.6
3,425,097	-				+0.5
3,425,097	-				+1.2
3,425,097	-				+0.2
3,425,102	+				+1.2
3,425,104	+				+0.5
3,425,104	+				+0.6
3,425,104	+				+0.5
3,425,112	-				-0.4
3,425,112	-				-0.1
3,425,117	-				+0.4
3,425,130	+				+1.5
3,425,198	+		GFF3385	0.14	+0.5
3,425,201	+		GFF3385	0.14	+0.5
3,425,203	+		GFF3385	0.14	+1.0
3,425,206	+		GFF3385	0.14	-0.1
3,425,206	-		GFF3385	0.14	+1.1
3,425,211	-		GFF3385	0.15	-0.5
3,425,216	+		GFF3385	0.15	+0.2
3,425,221	+		GFF3385	0.15	+0.1
3,425,221	+		GFF3385	0.15	+0.3
3,425,224	-		GFF3385	0.16	-0.7
3,425,226	+		GFF3385	0.16	-0.9
3,425,226	+		GFF3385	0.16	+1.7
3,425,226	+		GFF3385	0.16	-0.6
3,425,226	+		GFF3385	0.16	+0.1
3,425,226	+		GFF3385	0.16	-0.5
3,425,226	+		GFF3385	0.16	+1.5
3,425,226	+		GFF3385	0.16	+0.1
3,425,229	-		GFF3385	0.16	+0.8
3,425,234	-		GFF3385	0.16	-1.6
3,425,234	-		GFF3385	0.16	+0.6
3,425,234	-		GFF3385	0.16	+0.7
3,425,249	+		GFF3385	0.17	+0.4
3,425,253	+		GFF3385	0.18	+1.1
3,425,269	+		GFF3385	0.19	-0.7
3,425,269	+		GFF3385	0.19	+0.5
3,425,280	+		GFF3385	0.20	+1.8
3,425,283	-		GFF3385	0.20	+0.1
3,425,283	-		GFF3385	0.20	+0.1
3,425,346	+		GFF3385	0.24	+0.9
3,425,349	+		GFF3385	0.25	+1.1
3,425,360	-		GFF3385	0.25	-0.6
3,425,372	-		GFF3385	0.26	+0.9
3,425,372	-		GFF3385	0.26	-0.6
3,425,377	+		GFF3385	0.27	+0.1
3,425,406	+		GFF3385	0.29	+0.6
3,425,419	-		GFF3385	0.30	+0.1
3,425,431	-		GFF3385	0.30	+0.3
3,425,445	-		GFF3385	0.31	+1.3
3,425,445	-		GFF3385	0.31	-0.9
3,425,445	-		GFF3385	0.31	+0.8
3,425,445	-		GFF3385	0.31	+1.1
3,425,502	-		GFF3385	0.35	+0.3
3,425,509	+		GFF3385	0.36	+0.3
3,425,536	+		GFF3385	0.38	+0.7
3,425,582	+		GFF3385	0.41	+0.6
3,425,582	+		GFF3385	0.41	-0.4
3,425,582	+		GFF3385	0.41	+0.5
3,425,591	+		GFF3385	0.42	-0.9
3,425,593	+		GFF3385	0.42	-0.2
3,425,654	+		GFF3385	0.46	+1.5
3,425,654	-		GFF3385	0.46	+0.4
3,425,657	-		GFF3385	0.47	+0.1
3,425,670	+		GFF3385	0.47	+0.4
3,425,678	-		GFF3385	0.48	+1.0
3,425,679	+		GFF3385	0.48	+0.1
3,425,686	+		GFF3385	0.49	+0.1
3,425,692	+		GFF3385	0.49	+0.3
3,425,692	+		GFF3385	0.49	-3.1
3,425,695	+		GFF3385	0.49	-1.6
3,425,695	+		GFF3385	0.49	+0.6
3,425,695	+		GFF3385	0.49	-0.7
3,425,712	+		GFF3385	0.51	+0.6
3,425,731	+		GFF3385	0.52	-0.6
3,425,731	+		GFF3385	0.52	+0.6
3,425,736	+		GFF3385	0.52	+1.3
3,425,736	+		GFF3385	0.52	-0.5
3,425,736	+		GFF3385	0.52	-0.9
3,425,736	+		GFF3385	0.52	+1.1
3,425,736	+		GFF3385	0.52	+0.2
3,425,736	+		GFF3385	0.52	-0.2
3,425,736	+		GFF3385	0.52	-0.3
3,425,736	+		GFF3385	0.52	+1.5
3,425,736	+		GFF3385	0.52	+0.2
3,425,737	+		GFF3385	0.52	+0.4
3,425,739	-		GFF3385	0.52	+1.6
3,425,739	-		GFF3385	0.52	+0.6
3,425,739	-		GFF3385	0.52	+0.4
3,425,739	-		GFF3385	0.52	+0.3
3,425,739	-		GFF3385	0.52	-1.9
3,425,739	-		GFF3385	0.52	+0.1
3,425,739	-		GFF3385	0.52	+1.0
3,425,744	-		GFF3385	0.53	+0.3
3,425,744	-		GFF3385	0.53	+0.2
3,425,769	-		GFF3385	0.55	-0.9
3,425,774	-		GFF3385	0.55	-2.2
3,425,780	-		GFF3385	0.55	+0.0
3,425,793	-		GFF3385	0.56	-0.1
3,425,804	-		GFF3385	0.57	+0.8
3,425,827	-		GFF3385	0.59	+1.4
3,425,835	-		GFF3385	0.59	+0.8
3,425,838	+		GFF3385	0.60	+0.1
3,425,844	+		GFF3385	0.60	+1.2
3,425,849	+		GFF3385	0.60	+0.3
3,425,849	-		GFF3385	0.60	+0.1
3,425,854	+		GFF3385	0.61	+0.7
3,425,854	+		GFF3385	0.61	+0.9
3,425,854	+		GFF3385	0.61	-0.7
3,425,854	+		GFF3385	0.61	-0.0
3,425,857	-		GFF3385	0.61	-3.0
3,425,862	-		GFF3385	0.61	+0.4
3,425,862	-		GFF3385	0.61	+0.3
3,425,876	+		GFF3385	0.62	+0.8
3,425,876	+		GFF3385	0.62	+1.3
3,425,876	+		GFF3385	0.62	-0.6
3,425,883	+		GFF3385	0.63	+0.5
3,425,884	-		GFF3385	0.63	-0.3
3,425,884	-		GFF3385	0.63	+0.3
3,425,892	+		GFF3385	0.63	-1.3
3,425,917	-		GFF3385	0.65	+0.8
3,425,926	-		GFF3385	0.66	-0.3
3,425,927	-		GFF3385	0.66	-0.3
3,425,929	+		GFF3385	0.66	+0.1
3,425,930	+		GFF3385	0.66	-0.1
3,425,930	+		GFF3385	0.66	+0.2
3,425,930	+		GFF3385	0.66	-1.4
3,425,930	+		GFF3385	0.66	+0.3
3,425,930	+		GFF3385	0.66	+1.4
3,425,930	+		GFF3385	0.66	-0.6
3,425,930	+		GFF3385	0.66	+1.0
3,425,930	+		GFF3385	0.66	-0.4
3,425,937	-		GFF3385	0.67	+1.1
3,425,938	-		GFF3385	0.67	-0.2
3,425,940	+		GFF3385	0.67	-0.6
3,425,948	-		GFF3385	0.67	+0.9
3,425,948	-		GFF3385	0.67	-0.9
3,425,968	+		GFF3385	0.69	+0.9
3,426,036	+		GFF3385	0.74	+1.3
3,426,036	+		GFF3385	0.74	+0.3
3,426,036	+		GFF3385	0.74	+0.3
3,426,041	+		GFF3385	0.74	+0.0
3,426,041	+		GFF3385	0.74	+0.5
3,426,044	-		GFF3385	0.74	-0.4
3,426,044	-		GFF3385	0.74	+0.1
3,426,044	-		GFF3385	0.74	+1.4
3,426,049	-		GFF3385	0.75	+1.5
3,426,051	-		GFF3385	0.75	-0.8
3,426,054	+		GFF3385	0.75	+0.7
3,426,060	+		GFF3385	0.75	+0.6
3,426,060	+		GFF3385	0.75	+1.0
3,426,062	-		GFF3385	0.76	+0.9
3,426,062	-		GFF3385	0.76	+0.6
3,426,067	+		GFF3385	0.76	+0.3
3,426,134	-		GFF3385	0.81	-0.5
3,426,156	+		GFF3385	0.82	+1.2
3,426,156	+		GFF3385	0.82	+1.4
3,426,156	+		GFF3385	0.82	-2.0
3,426,164	-		GFF3385	0.83	+1.2
3,426,174	-		GFF3385	0.84	-1.2
3,426,195	+		GFF3385	0.85	-1.4
3,426,203	-		GFF3385	0.86	-2.3
3,426,214	+		GFF3385	0.86	+1.0
3,426,214	+		GFF3385	0.86	-1.6
3,426,214	+		GFF3385	0.86	+1.5
3,426,214	+		GFF3385	0.86	+1.4
3,426,214	+		GFF3385	0.86	+1.5
3,426,214	+		GFF3385	0.86	-0.1
3,426,222	-		GFF3385	0.87	-0.5
3,426,222	-		GFF3385	0.87	+0.4
3,426,223	+		GFF3385	0.87	+0.7
3,426,231	-		GFF3385	0.88	-0.2
3,426,233	+		GFF3385	0.88	-1.5
3,426,245	+		GFF3385	0.89	-0.6
3,426,258	+		GFF3385	0.90	+0.1
3,426,261	+		GFF3385	0.90	-1.0
3,426,262	+		GFF3385	0.90	-0.1
3,426,266	+				+0.1
3,426,266	+				+0.2
3,426,266	+				+1.0
3,426,266	+				-0.6
3,426,266	+				+0.1
3,426,266	+				+0.0
3,426,266	+				+0.1
3,426,266	+				+0.8
3,426,266	+				+1.3
3,426,274	-				+0.3
3,426,274	-				+0.3
3,426,274	-				+1.0
3,426,274	-				+0.7
3,426,274	-				+1.1
3,426,274	-				+0.4
3,426,274	-				-0.1
3,426,283	-				-0.2
3,426,293	-				-1.4
3,426,309	+				+1.8
3,426,330	+				+0.9
3,426,360	+				+0.8
3,426,371	+				+0.2
3,426,371	+				+0.6
3,426,379	-				+1.0
3,426,379	-				+0.1
3,426,379	-				+0.1
3,426,381	-				-0.4
3,426,398	+				+0.1
3,426,420	+				+0.9
3,426,443	+				+0.1
3,426,462	-				+0.9
3,426,502	-		GFF3386	0.12	+0.9
3,426,529	+		GFF3386	0.16	+0.6
3,426,529	+		GFF3386	0.16	+1.7
3,426,529	+		GFF3386	0.16	+1.6
3,426,564	+		GFF3386	0.20	-1.3
3,426,569	+		GFF3386	0.21	-0.4
3,426,569	+		GFF3386	0.21	-2.0
3,426,577	-		GFF3386	0.22	+0.4
3,426,594	-		GFF3386	0.24	-0.2
3,426,640	+		GFF3386	0.31	-0.2
3,426,690	+		GFF3386	0.38	+0.9
3,426,723	-		GFF3386	0.42	+0.1
3,426,739	+		GFF3386	0.44	+0.2
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3,426,744	+		GFF3386	0.45	+0.6
3,426,747	-		GFF3386	0.45	+1.3
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3,426,755	+		GFF3386	0.46	+0.1
3,426,768	+		GFF3386	0.48	+1.0
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3,426,776	-		GFF3386	0.49	+0.2
3,426,801	+		GFF3386	0.53	+1.4
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3,426,814	+		GFF3386	0.55	-0.6
3,426,883	+		GFF3386	0.64	+0.1
3,426,894	-		GFF3386	0.65	+0.1
3,426,914	+		GFF3386	0.68	-1.3
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3,426,962	-		GFF3386	0.75	-1.8
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3,426,969	+		GFF3386	0.76	-1.3
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3,427,014	+		GFF3386	0.82	-0.1
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3,427,042	+		GFF3386	0.86	-1.2
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3,427,042	+		GFF3386	0.86	+0.1
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3,427,069	+		GFF3386	0.89	+1.3
3,427,094	+				+0.3
3,427,110	-				-0.9
3,427,113	+				+0.3
3,427,113	+				+1.0
3,427,113	+				+1.7
3,427,113	+				+1.0
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3,427,161	+				+1.3
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3,427,169	-				+0.2
3,427,169	-				-1.2
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3,427,333	-				+0.7
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3,427,359	+		GFF3387	0.11	+1.1
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3,427,369	+		GFF3387	0.12	-0.3
3,427,369	+		GFF3387	0.12	+0.7
3,427,377	+		GFF3387	0.13	+0.0