Strain Fitness in Sphingobium sp. HT1-2 around GFF2637

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,656,086	-		GFF2636	0.37	-0.9
2,656,086	-		GFF2636	0.37	-1.3
2,656,088	+		GFF2636	0.38	-1.1
2,656,091	-		GFF2636	0.38	-0.6
2,656,096	-		GFF2636	0.38	+0.0
2,656,096	-		GFF2636	0.38	+0.2
2,656,102	+		GFF2636	0.39	-1.0
2,656,110	-		GFF2636	0.39	-0.4
2,656,110	-		GFF2636	0.39	-0.6
2,656,127	-		GFF2636	0.40	-0.5
2,656,147	+		GFF2636	0.42	-0.4
2,656,201	-		GFF2636	0.46	-0.3
2,656,206	-		GFF2636	0.46	-2.3
2,656,208	+		GFF2636	0.46	-1.9
2,656,208	+		GFF2636	0.46	-0.7
2,656,208	+		GFF2636	0.46	+1.1
2,656,209	-		GFF2636	0.46	+1.1
2,656,216	-		GFF2636	0.47	-1.9
2,656,216	-		GFF2636	0.47	-0.2
2,656,254	-		GFF2636	0.49	-0.7
2,656,257	+		GFF2636	0.50	-1.4
2,656,262	-		GFF2636	0.50	-2.3
2,656,265	-		GFF2636	0.50	+0.3
2,656,265	-		GFF2636	0.50	-0.7
2,656,267	+		GFF2636	0.50	+1.4
2,656,274	+		GFF2636	0.51	+0.0
2,656,288	+		GFF2636	0.52	-0.9
2,656,288	+		GFF2636	0.52	-0.7
2,656,288	+		GFF2636	0.52	-1.7
2,656,288	+		GFF2636	0.52	+0.8
2,656,288	+		GFF2636	0.52	-1.4
2,656,288	+		GFF2636	0.52	-0.8
2,656,288	+		GFF2636	0.52	+0.3
2,656,288	+		GFF2636	0.52	-1.2
2,656,288	+		GFF2636	0.52	+0.2
2,656,296	-		GFF2636	0.52	-0.4
2,656,296	-		GFF2636	0.52	-1.1
2,656,296	-		GFF2636	0.52	-0.6
2,656,296	-		GFF2636	0.52	-0.8
2,656,296	-		GFF2636	0.52	-0.9
2,656,296	-		GFF2636	0.52	-0.6
2,656,296	-		GFF2636	0.52	-1.6
2,656,296	-		GFF2636	0.52	-0.7
2,656,296	-		GFF2636	0.52	+0.3
2,656,296	-		GFF2636	0.52	+0.2
2,656,296	-		GFF2636	0.52	-0.4
2,656,296	-		GFF2636	0.52	-0.8
2,656,301	+		GFF2636	0.53	+1.3
2,656,303	-		GFF2636	0.53	+1.0
2,656,310	+		GFF2636	0.53	-0.1
2,656,320	+		GFF2636	0.54	-2.1
2,656,334	-		GFF2636	0.55	+1.3
2,656,369	-		GFF2636	0.58	+0.6
2,656,375	+		GFF2636	0.58	-0.5
2,656,375	+		GFF2636	0.58	-1.5
2,656,375	+		GFF2636	0.58	+1.1
2,656,375	+		GFF2636	0.58	+1.0
2,656,383	-		GFF2636	0.59	+0.3
2,656,383	-		GFF2636	0.59	+0.2
2,656,383	-		GFF2636	0.59	+1.1
2,656,383	-		GFF2636	0.59	+0.4
2,656,383	-		GFF2636	0.59	+0.6
2,656,383	-		GFF2636	0.59	+0.7
2,656,386	-		GFF2636	0.59	+0.5
2,656,400	+		GFF2636	0.60	-1.4
2,656,400	+		GFF2636	0.60	-1.5
2,656,405	+		GFF2636	0.60	-0.5
2,656,405	+		GFF2636	0.60	+0.1
2,656,408	-		GFF2636	0.60	-2.2
2,656,469	+		GFF2636	0.65	+0.9
2,656,496	+		GFF2636	0.67	-0.3
2,656,535	-		GFF2636	0.70	-1.3
2,656,566	-		GFF2636	0.72	+0.2
2,656,571	+		GFF2636	0.72	+1.4
2,656,604	-		GFF2636	0.74	-1.0
2,656,609	-		GFF2636	0.75	-1.0
2,656,611	+		GFF2636	0.75	-1.3
2,656,611	+		GFF2636	0.75	-0.8
2,656,611	+		GFF2636	0.75	+0.6
2,656,614	-		GFF2636	0.75	-0.7
2,656,619	-		GFF2636	0.76	+0.1
2,656,659	+		GFF2636	0.78	-0.0
2,656,659	+		GFF2636	0.78	+0.5
2,656,659	+		GFF2636	0.78	+0.3
2,656,659	+		GFF2636	0.78	+0.7
2,656,659	+		GFF2636	0.78	+0.2
2,656,659	+		GFF2636	0.78	+0.1
2,656,667	-		GFF2636	0.79	+0.2
2,656,667	-		GFF2636	0.79	-0.2
2,656,667	-		GFF2636	0.79	-2.2
2,656,667	-		GFF2636	0.79	-1.6
2,656,667	-		GFF2636	0.79	-0.6
2,656,667	-		GFF2636	0.79	+0.6
2,656,669	+		GFF2636	0.79	-3.1
2,656,669	+		GFF2636	0.79	+0.0
2,656,679	+		GFF2636	0.80	+0.1
2,656,681	+		GFF2636	0.80	-0.4
2,656,712	-		GFF2636	0.82	-1.0
2,656,712	-		GFF2636	0.82	-0.8
2,656,740	+		GFF2636	0.84	-0.2
2,656,741	+		GFF2636	0.84	-0.2
2,656,742	-		GFF2636	0.84	-0.4
2,656,752	+		GFF2636	0.85	-0.2
2,656,757	+		GFF2636	0.85	+1.0
2,656,757	+		GFF2636	0.85	-0.3
2,656,757	+		GFF2636	0.85	-0.6
2,656,762	+		GFF2636	0.86	-0.4
2,656,762	+		GFF2636	0.86	-1.2
2,656,762	+		GFF2636	0.86	-0.6
2,656,762	+		GFF2636	0.86	+0.1
2,656,762	+		GFF2636	0.86	-0.8
2,656,762	+		GFF2636	0.86	-2.4
2,656,762	+		GFF2636	0.86	+0.1
2,656,765	-		GFF2636	0.86	-0.2
2,656,765	-		GFF2636	0.86	-0.4
2,656,770	-		GFF2636	0.86	-1.2
2,656,770	-		GFF2636	0.86	+0.1
2,656,770	-		GFF2636	0.86	-1.2
2,656,770	-		GFF2636	0.86	+0.3
2,656,770	-		GFF2636	0.86	-1.0
2,656,770	-		GFF2636	0.86	-0.7
2,656,770	-		GFF2636	0.86	-2.6
2,656,770	-		GFF2636	0.86	+2.1
2,656,792	+		GFF2636	0.88	+0.7
2,656,792	+		GFF2636	0.88	-0.9
2,656,797	+		GFF2636	0.88	+0.1
2,656,800	-		GFF2636	0.88	-2.1
2,656,808	+		GFF2636	0.89	-1.5
2,656,836	+				-3.8
2,656,842	+				+0.6
2,656,843	-				+0.7
2,656,844	-				+0.5
2,656,857	+				-0.5
2,656,867	+				+0.1
2,656,867	+				-0.7
2,656,867	+				-0.4
2,656,867	+				-2.1
2,656,867	+				+0.7
2,656,874	+				-0.6
2,656,875	-				+0.3
2,656,875	-				+0.4
2,656,875	-				+1.3
2,656,875	-				-0.1
2,656,875	-				-1.9
2,656,875	-				-0.3
2,656,937	+				-0.0
2,656,937	-				-0.9
2,656,945	-				-0.1
2,656,945	-				-1.8
2,656,945	-				-1.5
2,656,962	-				-0.1
2,656,964	+				-1.7
2,656,970	+				+0.0
2,656,972	-				+1.4
2,656,972	-				-1.5
2,656,978	-				+0.3
2,656,988	-				+0.3
2,657,020	+				-1.0
2,657,051	+				-0.4
2,657,051	+				-0.3
2,657,051	+				-1.5
2,657,059	-				+1.6
2,657,059	-				+0.1
2,657,086	-				-0.4
2,657,095	-				+0.1
2,657,102	+				+0.9
2,657,109	+				+0.2
2,657,110	-				+0.5
2,657,114	+				+0.3
2,657,114	+				-0.3
2,657,114	+				+0.4
2,657,114	+				+0.1
2,657,114	+				-0.5
2,657,114	+				-0.5
2,657,114	+				-1.3
2,657,114	+				+0.6
2,657,114	+				+0.1
2,657,114	+				-1.1
2,657,114	+				-2.5
2,657,114	+				-0.1
2,657,114	+				+0.2
2,657,114	+				-0.2
2,657,114	+				-1.2
2,657,115	+				-0.1
2,657,117	-				-1.1
2,657,122	-				-1.7
2,657,122	-				+0.4
2,657,122	-				-0.3
2,657,122	-				-1.8
2,657,122	-				+0.6
2,657,122	-				+0.0
2,657,122	-				-1.9
2,657,122	-				-0.0
2,657,122	-				+1.4
2,657,122	-				-0.2
2,657,145	+				-0.4
2,657,153	+				+1.4
2,657,153	+				-0.6
2,657,155	+				-0.6
2,657,160	-				+1.3
2,657,161	-				-1.5
2,657,161	-				+0.3
2,657,161	-				+0.4
2,657,163	-				+0.4
2,657,163	-				-0.8
2,657,173	-				-1.2
2,657,179	-				+0.2
2,657,180	-				-0.1
2,657,185	-				-1.3
2,657,186	-				-0.9
2,657,204	+				-1.3
2,657,243	+		GFF2637	0.12	-1.2
2,657,243	+		GFF2637	0.12	+0.0
2,657,243	+		GFF2637	0.12	-2.5
2,657,243	+		GFF2637	0.12	-0.3
2,657,292	+		GFF2637	0.16	-1.7
2,657,292	+		GFF2637	0.16	-0.6
2,657,363	+		GFF2637	0.21	+0.8
2,657,363	+		GFF2637	0.21	-1.6
2,657,363	+		GFF2637	0.21	-2.1
2,657,363	+		GFF2637	0.21	-0.7
2,657,363	+		GFF2637	0.21	-0.5
2,657,363	+		GFF2637	0.21	-1.0
2,657,371	-		GFF2637	0.22	+0.1
2,657,371	-		GFF2637	0.22	+0.4
2,657,371	-		GFF2637	0.22	-0.7
2,657,376	-		GFF2637	0.22	-1.9
2,657,376	-		GFF2637	0.22	+1.5
2,657,384	-		GFF2637	0.23	+0.6
2,657,388	+		GFF2637	0.23	+0.7
2,657,391	-		GFF2637	0.24	-0.6
2,657,406	+		GFF2637	0.25	-1.1
2,657,406	+		GFF2637	0.25	-2.5
2,657,406	+		GFF2637	0.25	-1.2
2,657,406	+		GFF2637	0.25	-2.0
2,657,406	+		GFF2637	0.25	+0.4
2,657,406	-		GFF2637	0.25	-1.2
2,657,406	-		GFF2637	0.25	+0.7
2,657,414	-		GFF2637	0.25	-0.1
2,657,414	-		GFF2637	0.25	+0.3
2,657,414	-		GFF2637	0.25	+0.7
2,657,414	-		GFF2637	0.25	-0.9
2,657,414	-		GFF2637	0.25	+2.2
2,657,414	-		GFF2637	0.25	-0.7
2,657,414	-		GFF2637	0.25	-1.1
2,657,416	+		GFF2637	0.26	+0.6
2,657,419	-		GFF2637	0.26	-2.7
2,657,424	-		GFF2637	0.26	-0.2
2,657,424	-		GFF2637	0.26	+0.3
2,657,447	+		GFF2637	0.28	-0.6
2,657,447	+		GFF2637	0.28	-1.5
2,657,452	+		GFF2637	0.28	-0.3
2,657,452	+		GFF2637	0.28	-0.9
2,657,452	+		GFF2637	0.28	+0.2
2,657,455	-		GFF2637	0.29	+0.2
2,657,457	+		GFF2637	0.29	-0.2
2,657,457	+		GFF2637	0.29	-2.8
2,657,457	+		GFF2637	0.29	+1.1
2,657,459	+		GFF2637	0.29	-1.1
2,657,459	+		GFF2637	0.29	-0.3
2,657,459	+		GFF2637	0.29	-1.3
2,657,459	+		GFF2637	0.29	+0.7
2,657,459	+		GFF2637	0.29	+0.4
2,657,459	+		GFF2637	0.29	-2.8
2,657,459	+		GFF2637	0.29	+0.2
2,657,459	+		GFF2637	0.29	+0.5
2,657,459	+		GFF2637	0.29	+1.3
2,657,459	+		GFF2637	0.29	+0.4
2,657,459	+		GFF2637	0.29	-0.1
2,657,459	+		GFF2637	0.29	-1.7
2,657,460	-		GFF2637	0.29	-0.4
2,657,460	-		GFF2637	0.29	+0.1
2,657,460	-		GFF2637	0.29	+0.7
2,657,465	-		GFF2637	0.29	+0.1
2,657,465	-		GFF2637	0.29	-1.7
2,657,465	-		GFF2637	0.29	-0.0
2,657,467	-		GFF2637	0.29	-0.4
2,657,467	-		GFF2637	0.29	-0.8
2,657,467	-		GFF2637	0.29	-2.4
2,657,467	-		GFF2637	0.29	+1.0
2,657,467	-		GFF2637	0.29	-1.3
2,657,467	-		GFF2637	0.29	-0.1
2,657,467	-		GFF2637	0.29	+0.6
2,657,467	-		GFF2637	0.29	-1.3
2,657,467	-		GFF2637	0.29	-1.6
2,657,467	-		GFF2637	0.29	-1.8
2,657,467	-		GFF2637	0.29	-1.1
2,657,467	-		GFF2637	0.29	-1.5
2,657,467	-		GFF2637	0.29	+0.7
2,657,467	-		GFF2637	0.29	-0.8
2,657,467	-		GFF2637	0.29	-2.2
2,657,467	-		GFF2637	0.29	+0.2
2,657,467	-		GFF2637	0.29	-0.0
2,657,467	-		GFF2637	0.29	+1.4
2,657,509	+		GFF2637	0.33	-0.7
2,657,509	+		GFF2637	0.33	+0.1
2,657,517	-		GFF2637	0.33	-0.7
2,657,517	-		GFF2637	0.33	+0.0
2,657,538	+		GFF2637	0.35	-0.1
2,657,542	+		GFF2637	0.35	-0.4
2,657,542	+		GFF2637	0.35	-0.4
2,657,549	+		GFF2637	0.36	-0.5
2,657,550	-		GFF2637	0.36	+0.7
2,657,550	-		GFF2637	0.36	-1.0
2,657,584	+		GFF2637	0.38	-0.4
2,657,596	+		GFF2637	0.39	-1.2
2,657,597	-		GFF2637	0.39	+0.2
2,657,603	+		GFF2637	0.40	+1.6
2,657,611	-		GFF2637	0.41	+0.3
2,657,611	-		GFF2637	0.41	-0.4
2,657,618	-		GFF2637	0.41	-0.2
2,657,618	-		GFF2637	0.41	-0.6
2,657,628	+		GFF2637	0.42	-2.2
2,657,636	-		GFF2637	0.42	-1.5
2,657,636	-		GFF2637	0.42	-0.7
2,657,636	-		GFF2637	0.42	+0.6
2,657,661	-		GFF2637	0.44	+1.2
2,657,673	+		GFF2637	0.45	+0.2
2,657,692	+		GFF2637	0.47	+1.9
2,657,707	+		GFF2637	0.48	-0.4
2,657,752	+		GFF2637	0.51	-0.7
2,657,760	+		GFF2637	0.52	+0.4
2,657,760	-		GFF2637	0.52	+0.8
2,657,776	+		GFF2637	0.53	+0.5
2,657,778	+		GFF2637	0.53	-0.4
2,657,778	+		GFF2637	0.53	+0.8
2,657,778	+		GFF2637	0.53	+0.5
2,657,786	-		GFF2637	0.54	-1.7
2,657,786	-		GFF2637	0.54	-0.3
2,657,793	+		GFF2637	0.55	-2.3
2,657,801	-		GFF2637	0.55	+0.3
2,657,836	+		GFF2637	0.58	-0.6
2,657,847	+		GFF2637	0.59	+0.1
2,657,854	-		GFF2637	0.59	-0.4
2,657,870	+		GFF2637	0.61	-1.5
2,657,878	-		GFF2637	0.61	+0.6
2,657,878	-		GFF2637	0.61	+0.5
2,657,892	-		GFF2637	0.62	+0.3
2,657,897	-		GFF2637	0.63	+0.7
2,657,902	+		GFF2637	0.63	+0.4
2,657,932	-		GFF2637	0.65	-1.0
2,657,932	-		GFF2637	0.65	+0.2
2,657,932	-		GFF2637	0.65	+0.9
2,657,932	-		GFF2637	0.65	+0.2
2,657,932	-		GFF2637	0.65	-0.3
2,657,932	-		GFF2637	0.65	-1.7
2,657,946	+		GFF2637	0.66	-0.4
2,657,954	-		GFF2637	0.67	+0.6
2,657,954	-		GFF2637	0.67	+0.4
2,657,954	-		GFF2637	0.67	-0.1
2,657,976	-		GFF2637	0.69	-0.5
2,657,976	-		GFF2637	0.69	-1.4
2,657,978	+		GFF2637	0.69	-2.1
2,658,005	+		GFF2637	0.71	-0.7
2,658,005	+		GFF2637	0.71	-1.3
2,658,008	-		GFF2637	0.71	-1.2
2,658,013	-		GFF2637	0.72	+2.3
2,658,013	-		GFF2637	0.72	+0.3
2,658,018	-		GFF2637	0.72	+1.5
2,658,025	+		GFF2637	0.72	-0.5
2,658,025	+		GFF2637	0.72	+0.4
2,658,031	-		GFF2637	0.73	-1.9
2,658,033	-		GFF2637	0.73	-1.4
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2,658,266	-				+1.9
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2,658,337	-				-1.9
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2,658,342	-				+0.1
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2,658,342	-				+1.4
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2,658,354	-				+0.7
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2,658,587	+				-2.8
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2,658,597	-				-0.6
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