Experiment: EMM_noCarbon with Sucrose and Putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF839 and GFF840 are separated by 36 nucleotides GFF840 and GFF841 are separated by 197 nucleotides GFF841 and GFF842 are separated by 219 nucleotides
GFF839 - hypothetical protein, at 825,500 to 827,518
GFF839
GFF840 - hypothetical protein, at 827,555 to 827,671
GFF840
GFF841 - tRNA-Gly-GCC, at 827,869 to 827,943
GFF841
GFF842 - hypothetical protein, at 828,163 to 828,612
GFF842
Position (kb) 827
828 Strain fitness (log2 ratio) -2
-1
0
1
2 at 826.573 kb on + strand, within GFF839 at 826.578 kb on + strand, within GFF839 at 826.578 kb on + strand, within GFF839 at 826.578 kb on + strand, within GFF839 at 826.578 kb on + strand, within GFF839 at 826.578 kb on + strand, within GFF839 at 826.578 kb on + strand, within GFF839 at 826.586 kb on - strand, within GFF839 at 826.586 kb on - strand, within GFF839 at 826.586 kb on - strand, within GFF839 at 826.588 kb on + strand, within GFF839 at 826.596 kb on - strand, within GFF839 at 826.609 kb on - strand, within GFF839 at 826.645 kb on + strand, within GFF839 at 826.653 kb on - strand, within GFF839 at 826.653 kb on - strand, within GFF839 at 826.653 kb on - strand, within GFF839 at 826.719 kb on - strand, within GFF839 at 826.763 kb on + strand, within GFF839 at 826.838 kb on + strand, within GFF839 at 826.846 kb on - strand, within GFF839 at 826.846 kb on - strand, within GFF839 at 826.846 kb on - strand, within GFF839 at 826.855 kb on + strand, within GFF839 at 826.858 kb on - strand, within GFF839 at 826.860 kb on - strand, within GFF839 at 826.876 kb on + strand, within GFF839 at 826.877 kb on - strand, within GFF839 at 826.884 kb on - strand, within GFF839 at 826.884 kb on - strand, within GFF839 at 826.896 kb on + strand, within GFF839 at 826.896 kb on + strand, within GFF839 at 826.896 kb on + strand, within GFF839 at 826.897 kb on - strand, within GFF839 at 826.927 kb on + strand, within GFF839 at 826.935 kb on + strand, within GFF839 at 826.935 kb on + strand, within GFF839 at 826.935 kb on - strand, within GFF839 at 826.940 kb on + strand, within GFF839 at 826.940 kb on + strand, within GFF839 at 826.948 kb on - strand, within GFF839 at 826.948 kb on - strand, within GFF839 at 826.948 kb on - strand, within GFF839 at 826.948 kb on - strand, within GFF839 at 826.972 kb on - strand, within GFF839 at 826.975 kb on - strand, within GFF839 at 826.986 kb on - strand, within GFF839 at 826.986 kb on - strand, within GFF839 at 827.034 kb on + strand, within GFF839 at 827.034 kb on + strand, within GFF839 at 827.034 kb on + strand, within GFF839 at 827.034 kb on + strand, within GFF839 at 827.044 kb on + strand, within GFF839 at 827.044 kb on + strand, within GFF839 at 827.070 kb on + strand, within GFF839 at 827.111 kb on - strand, within GFF839 at 827.131 kb on - strand, within GFF839 at 827.191 kb on + strand, within GFF839 at 827.191 kb on + strand, within GFF839 at 827.191 kb on + strand, within GFF839 at 827.191 kb on + strand, within GFF839 at 827.199 kb on + strand, within GFF839 at 827.214 kb on + strand, within GFF839 at 827.214 kb on + strand, within GFF839 at 827.217 kb on + strand, within GFF839 at 827.233 kb on + strand, within GFF839 at 827.233 kb on + strand, within GFF839 at 827.233 kb on + strand, within GFF839 at 827.235 kb on + strand, within GFF839 at 827.241 kb on - strand, within GFF839 at 827.241 kb on - strand, within GFF839 at 827.243 kb on - strand, within GFF839 at 827.245 kb on + strand, within GFF839 at 827.246 kb on + strand, within GFF839 at 827.253 kb on - strand, within GFF839 at 827.261 kb on - strand, within GFF839 at 827.269 kb on + strand, within GFF839 at 827.277 kb on - strand, within GFF839 at 827.309 kb on - strand, within GFF839 at 827.314 kb on - strand, within GFF839 at 827.316 kb on + strand, within GFF839 at 827.316 kb on + strand, within GFF839 at 827.316 kb on + strand, within GFF839 at 827.316 kb on + strand, within GFF839 at 827.316 kb on + strand, within GFF839 at 827.334 kb on - strand at 827.340 kb on + strand at 827.341 kb on + strand at 827.350 kb on + strand at 827.365 kb on + strand at 827.365 kb on + strand at 827.365 kb on + strand at 827.365 kb on + strand at 827.365 kb on + strand at 827.365 kb on + strand at 827.372 kb on + strand at 827.373 kb on - strand at 827.373 kb on - strand at 827.373 kb on - strand at 827.373 kb on - strand at 827.373 kb on - strand at 827.373 kb on - strand at 827.373 kb on - strand at 827.373 kb on - strand at 827.373 kb on - strand at 827.373 kb on - strand at 827.397 kb on + strand at 827.399 kb on + strand at 827.399 kb on + strand at 827.407 kb on - strand at 827.409 kb on + strand at 827.412 kb on - strand at 827.412 kb on - strand at 827.412 kb on - strand at 827.441 kb on - strand at 827.472 kb on + strand at 827.472 kb on + strand at 827.497 kb on - strand at 827.499 kb on - strand at 827.499 kb on - strand at 827.499 kb on - strand at 827.499 kb on - strand at 827.499 kb on - strand at 827.555 kb on + strand at 827.577 kb on + strand, within GFF840 at 827.577 kb on + strand, within GFF840 at 827.582 kb on + strand, within GFF840 at 827.583 kb on - strand, within GFF840 at 827.583 kb on - strand, within GFF840 at 827.603 kb on + strand, within GFF840 at 827.603 kb on + strand, within GFF840 at 827.606 kb on - strand, within GFF840 at 827.608 kb on + strand, within GFF840 at 827.611 kb on - strand, within GFF840 at 827.611 kb on - strand, within GFF840 at 827.616 kb on - strand, within GFF840 at 827.616 kb on - strand, within GFF840 at 827.616 kb on - strand, within GFF840 at 827.623 kb on + strand, within GFF840 at 827.623 kb on + strand, within GFF840 at 827.627 kb on + strand, within GFF840 at 827.628 kb on + strand, within GFF840 at 827.628 kb on + strand, within GFF840 at 827.631 kb on - strand, within GFF840 at 827.631 kb on - strand, within GFF840 at 827.631 kb on - strand, within GFF840 at 827.631 kb on - strand, within GFF840 at 827.635 kb on - strand, within GFF840 at 827.667 kb on + strand at 827.672 kb on + strand at 827.680 kb on - strand at 827.685 kb on - strand at 827.695 kb on + strand at 828.027 kb on - strand at 828.035 kb on - strand at 828.046 kb on + strand at 828.047 kb on + strand at 828.055 kb on - strand at 828.055 kb on - strand at 828.055 kb on - strand at 828.055 kb on - strand at 828.058 kb on + strand at 828.086 kb on + strand at 828.089 kb on + strand at 828.103 kb on + strand at 828.103 kb on + strand at 828.103 kb on + strand at 828.108 kb on + strand at 828.128 kb on + strand at 828.143 kb on - strand at 828.152 kb on + strand at 828.160 kb on - strand at 828.163 kb on + strand at 828.170 kb on - strand at 828.170 kb on - strand at 828.174 kb on + strand at 828.174 kb on + strand at 828.174 kb on + strand at 828.194 kb on + strand at 828.210 kb on - strand, within GFF842 at 828.221 kb on - strand, within GFF842 at 828.226 kb on - strand, within GFF842 at 828.227 kb on + strand, within GFF842 at 828.270 kb on + strand, within GFF842 at 828.278 kb on - strand, within GFF842 at 828.307 kb on - strand, within GFF842 at 828.314 kb on + strand, within GFF842 at 828.314 kb on + strand, within GFF842 at 828.320 kb on + strand, within GFF842 at 828.322 kb on - strand, within GFF842 at 828.328 kb on - strand, within GFF842 at 828.328 kb on - strand, within GFF842 at 828.328 kb on - strand, within GFF842 at 828.333 kb on - strand, within GFF842 at 828.337 kb on + strand, within GFF842 at 828.337 kb on + strand, within GFF842 at 828.342 kb on + strand, within GFF842 at 828.357 kb on + strand, within GFF842 at 828.367 kb on + strand, within GFF842 at 828.367 kb on + strand, within GFF842 at 828.372 kb on + strand, within GFF842 at 828.376 kb on - strand, within GFF842 at 828.380 kb on - strand, within GFF842 at 828.392 kb on + strand, within GFF842 at 828.392 kb on + strand, within GFF842 at 828.397 kb on + strand, within GFF842 at 828.402 kb on + strand, within GFF842 at 828.402 kb on + strand, within GFF842 at 828.405 kb on - strand, within GFF842 at 828.405 kb on - strand, within GFF842 at 828.410 kb on - strand, within GFF842 at 828.410 kb on - strand, within GFF842 at 828.410 kb on - strand, within GFF842 at 828.417 kb on - strand, within GFF842 at 828.436 kb on + strand, within GFF842 at 828.436 kb on + strand, within GFF842 at 828.444 kb on - strand, within GFF842 at 828.447 kb on + strand, within GFF842 at 828.455 kb on - strand, within GFF842 at 828.477 kb on - strand, within GFF842 at 828.477 kb on - strand, within GFF842 at 828.539 kb on - strand, within GFF842 at 828.562 kb on + strand, within GFF842 at 828.608 kb on + strand at 828.616 kb on - strand at 828.620 kb on + strand at 828.628 kb on - strand at 828.651 kb on + strand at 828.658 kb on - strand at 828.659 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine remove 826,573 + GFF839 0.53 -0.8 826,578 + GFF839 0.53 +0.5 826,578 + GFF839 0.53 +0.9 826,578 + GFF839 0.53 +0.5 826,578 + GFF839 0.53 -2.1 826,578 + GFF839 0.53 +0.6 826,578 + GFF839 0.53 +0.3 826,586 - GFF839 0.54 -0.6 826,586 - GFF839 0.54 -0.5 826,586 - GFF839 0.54 -0.2 826,588 + GFF839 0.54 +0.9 826,596 - GFF839 0.54 +0.1 826,609 - GFF839 0.55 -0.0 826,645 + GFF839 0.57 -0.6 826,653 - GFF839 0.57 +0.6 826,653 - GFF839 0.57 -1.3 826,653 - GFF839 0.57 +0.9 826,719 - GFF839 0.60 -0.2 826,763 + GFF839 0.63 -1.2 826,838 + GFF839 0.66 +1.9 826,846 - GFF839 0.67 +0.3 826,846 - GFF839 0.67 -1.6 826,846 - GFF839 0.67 -0.5 826,855 + GFF839 0.67 -1.4 826,858 - GFF839 0.67 -0.9 826,860 - GFF839 0.67 +0.3 826,876 + GFF839 0.68 +0.7 826,877 - GFF839 0.68 -1.6 826,884 - GFF839 0.69 +0.9 826,884 - GFF839 0.69 -0.1 826,896 + GFF839 0.69 +0.3 826,896 + GFF839 0.69 +0.3 826,896 + GFF839 0.69 +0.4 826,897 - GFF839 0.69 -1.3 826,927 + GFF839 0.71 -1.5 826,935 + GFF839 0.71 -1.3 826,935 + GFF839 0.71 +0.5 826,935 - GFF839 0.71 +0.6 826,940 + GFF839 0.71 +1.1 826,940 + GFF839 0.71 +0.2 826,948 - GFF839 0.72 +0.2 826,948 - GFF839 0.72 +0.9 826,948 - GFF839 0.72 +0.7 826,948 - GFF839 0.72 +0.1 826,972 - GFF839 0.73 -0.1 826,975 - GFF839 0.73 -0.2 826,986 - GFF839 0.74 +0.1 826,986 - GFF839 0.74 +0.7 827,034 + GFF839 0.76 -0.8 827,034 + GFF839 0.76 +0.3 827,034 + GFF839 0.76 -1.0 827,034 + GFF839 0.76 +0.3 827,044 + GFF839 0.76 -2.0 827,044 + GFF839 0.76 -2.3 827,070 + GFF839 0.78 +0.4 827,111 - GFF839 0.80 -0.4 827,131 - GFF839 0.81 +1.4 827,191 + GFF839 0.84 -1.3 827,191 + GFF839 0.84 +0.6 827,191 + GFF839 0.84 +0.9 827,191 + GFF839 0.84 -2.5 827,199 + GFF839 0.84 -0.5 827,214 + GFF839 0.85 -1.7 827,214 + GFF839 0.85 -2.3 827,217 + GFF839 0.85 +0.4 827,233 + GFF839 0.86 -0.1 827,233 + GFF839 0.86 -0.8 827,233 + GFF839 0.86 -1.6 827,235 + GFF839 0.86 -2.0 827,241 - GFF839 0.86 -1.3 827,241 - GFF839 0.86 +1.1 827,243 - GFF839 0.86 +0.5 827,245 + GFF839 0.86 +0.4 827,246 + GFF839 0.86 +1.2 827,253 - GFF839 0.87 -1.4 827,261 - GFF839 0.87 -0.2 827,269 + GFF839 0.88 +0.1 827,277 - GFF839 0.88 -2.0 827,309 - GFF839 0.90 -1.7 827,314 - GFF839 0.90 +0.3 827,316 + GFF839 0.90 -0.0 827,316 + GFF839 0.90 -0.1 827,316 + GFF839 0.90 +0.5 827,316 + GFF839 0.90 -1.7 827,316 + GFF839 0.90 +1.7 827,334 - -0.3 827,340 + -1.1 827,341 + -0.7 827,350 + +0.5 827,365 + +0.5 827,365 + -0.1 827,365 + -0.2 827,365 + -0.1 827,365 + +0.5 827,365 + -1.7 827,372 + -0.1 827,373 - +0.3 827,373 - +0.1 827,373 - +0.8 827,373 - -0.9 827,373 - -0.6 827,373 - -0.0 827,373 - +0.8 827,373 - -0.3 827,373 - -0.9 827,373 - +1.2 827,397 + -0.4 827,399 + -0.6 827,399 + +0.1 827,407 - -1.4 827,409 + +0.3 827,412 - -0.8 827,412 - +1.3 827,412 - +0.3 827,441 - +1.3 827,472 + -1.1 827,472 + +0.5 827,497 - +0.1 827,499 - -0.3 827,499 - +0.2 827,499 - -1.2 827,499 - -1.1 827,499 - -0.8 827,555 + +1.1 827,577 + GFF840 0.19 -0.1 827,577 + GFF840 0.19 -0.3 827,582 + GFF840 0.23 +0.3 827,583 - GFF840 0.24 +0.0 827,583 - GFF840 0.24 -0.4 827,603 + GFF840 0.41 -0.5 827,603 + GFF840 0.41 -1.1 827,606 - GFF840 0.44 +0.4 827,608 + GFF840 0.45 -0.8 827,611 - GFF840 0.48 -0.0 827,611 - GFF840 0.48 +0.1 827,616 - GFF840 0.52 -0.7 827,616 - GFF840 0.52 -0.7 827,616 - GFF840 0.52 +0.8 827,623 + GFF840 0.58 -0.1 827,623 + GFF840 0.58 +0.5 827,627 + GFF840 0.62 +0.6 827,628 + GFF840 0.62 +0.7 827,628 + GFF840 0.62 -0.6 827,631 - GFF840 0.65 +1.3 827,631 - GFF840 0.65 +0.4 827,631 - GFF840 0.65 -0.3 827,631 - GFF840 0.65 +0.2 827,635 - GFF840 0.68 +0.4 827,667 + +0.1 827,672 + -1.1 827,680 - -1.0 827,685 - +1.1 827,695 + +0.9 828,027 - -0.8 828,035 - +0.8 828,046 + -1.7 828,047 + +1.2 828,055 - -0.6 828,055 - -0.6 828,055 - -0.3 828,055 - -2.5 828,058 + +0.1 828,086 + +1.4 828,089 + +0.2 828,103 + +0.7 828,103 + -2.0 828,103 + -0.5 828,108 + -0.7 828,128 + -0.7 828,143 - +1.6 828,152 + +0.5 828,160 - -0.2 828,163 + -2.2 828,170 - -2.1 828,170 - +1.8 828,174 + +2.2 828,174 + -0.8 828,174 + -1.2 828,194 + -0.8 828,210 - GFF842 0.10 -0.1 828,221 - GFF842 0.13 -1.0 828,226 - GFF842 0.14 -1.2 828,227 + GFF842 0.14 +0.2 828,270 + GFF842 0.24 +1.0 828,278 - GFF842 0.26 -2.0 828,307 - GFF842 0.32 -0.9 828,314 + GFF842 0.34 +0.3 828,314 + GFF842 0.34 -0.1 828,320 + GFF842 0.35 -0.4 828,322 - GFF842 0.35 +0.1 828,328 - GFF842 0.37 +0.7 828,328 - GFF842 0.37 +0.1 828,328 - GFF842 0.37 +1.2 828,333 - GFF842 0.38 -2.2 828,337 + GFF842 0.39 -1.1 828,337 + GFF842 0.39 -1.4 828,342 + GFF842 0.40 -1.2 828,357 + GFF842 0.43 -0.2 828,367 + GFF842 0.45 +0.2 828,367 + GFF842 0.45 +0.2 828,372 + GFF842 0.46 -2.1 828,376 - GFF842 0.47 +0.6 828,380 - GFF842 0.48 -1.3 828,392 + GFF842 0.51 -0.7 828,392 + GFF842 0.51 +0.4 828,397 + GFF842 0.52 -0.6 828,402 + GFF842 0.53 +0.3 828,402 + GFF842 0.53 -0.0 828,405 - GFF842 0.54 -0.8 828,405 - GFF842 0.54 +0.9 828,410 - GFF842 0.55 +0.6 828,410 - GFF842 0.55 -0.5 828,410 - GFF842 0.55 -1.3 828,417 - GFF842 0.56 -2.1 828,436 + GFF842 0.61 -0.0 828,436 + GFF842 0.61 +0.2 828,444 - GFF842 0.62 +0.2 828,447 + GFF842 0.63 -2.4 828,455 - GFF842 0.65 -0.4 828,477 - GFF842 0.70 +0.2 828,477 - GFF842 0.70 -0.1 828,539 - GFF842 0.84 -0.3 828,562 + GFF842 0.89 -1.0 828,608 + -0.6 828,616 - +0.7 828,620 + -1.6 828,628 - -0.3 828,651 + -0.4 828,658 - +0.4 828,659 + +0.6
Or see this region's nucleotide sequence