Strain Fitness in Sphingobium sp. HT1-2 around GFF4830

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,813,945	-		GFF4828	0.65	-0.2
4,813,975	+		GFF4828	0.68	+1.1
4,813,975	+		GFF4828	0.68	+0.2
4,813,975	+		GFF4828	0.68	-0.2
4,813,975	+		GFF4828	0.68	+2.1
4,813,975	+		GFF4828	0.68	-1.0
4,813,975	+		GFF4828	0.68	-0.5
4,813,975	+		GFF4828	0.68	-2.9
4,813,975	+		GFF4828	0.68	-0.1
4,813,975	+		GFF4828	0.68	-2.0
4,813,975	+		GFF4828	0.68	+0.6
4,813,975	+		GFF4828	0.68	+0.3
4,813,975	+		GFF4828	0.68	+0.1
4,813,975	+		GFF4828	0.68	-0.8
4,813,975	+		GFF4828	0.68	+0.3
4,813,975	+		GFF4828	0.68	-0.3
4,813,975	+		GFF4828	0.68	+0.0
4,813,978	-		GFF4828	0.68	+0.1
4,813,980	+		GFF4828	0.68	+1.6
4,813,980	+		GFF4828	0.68	-0.1
4,813,980	+		GFF4828	0.68	+0.5
4,813,983	-		GFF4828	0.68	+0.0
4,813,983	-		GFF4828	0.68	+0.5
4,813,983	-		GFF4828	0.68	-0.9
4,813,983	-		GFF4828	0.68	+0.2
4,813,983	-		GFF4828	0.68	-1.2
4,813,983	-		GFF4828	0.68	+0.2
4,813,983	-		GFF4828	0.68	-2.3
4,813,983	-		GFF4828	0.68	+0.2
4,813,983	-		GFF4828	0.68	-1.8
4,813,983	-		GFF4828	0.68	+0.1
4,813,983	-		GFF4828	0.68	-0.8
4,813,983	-		GFF4828	0.68	-0.8
4,813,983	-		GFF4828	0.68	+0.9
4,813,983	-		GFF4828	0.68	+0.1
4,813,983	-		GFF4828	0.68	-0.3
4,813,983	-		GFF4828	0.68	-0.1
4,813,988	-		GFF4828	0.69	-0.7
4,813,988	-		GFF4828	0.69	+1.1
4,813,988	-		GFF4828	0.69	+1.1
4,813,994	+		GFF4828	0.69	-0.5
4,813,998	-		GFF4828	0.70	+0.6
4,814,002	-		GFF4828	0.70	+0.4
4,814,060	+		GFF4828	0.75	+0.1
4,814,095	-		GFF4828	0.78	-0.1
4,814,110	+		GFF4828	0.80	-1.7
4,814,115	+		GFF4828	0.80	-1.9
4,814,118	-		GFF4828	0.80	-0.5
4,814,118	-		GFF4828	0.80	+0.2
4,814,129	+		GFF4828	0.81	-0.5
4,814,158	+		GFF4828	0.84	-0.1
4,814,158	+		GFF4828	0.84	-2.4
4,814,158	+		GFF4828	0.84	+0.9
4,814,158	+		GFF4828	0.84	+0.3
4,814,158	+		GFF4828	0.84	-0.1
4,814,158	+		GFF4828	0.84	-0.4
4,814,166	-		GFF4828	0.85	-0.2
4,814,170	+		GFF4828	0.85	+0.7
4,814,176	+		GFF4828	0.86	-0.3
4,814,176	+		GFF4828	0.86	+0.7
4,814,184	-		GFF4828	0.86	+0.5
4,814,188	+		GFF4828	0.87	-2.2
4,814,194	+		GFF4828	0.87	+0.8
4,814,199	+		GFF4828	0.88	+0.2
4,814,199	+		GFF4828	0.88	+0.3
4,814,199	+		GFF4828	0.88	+1.1
4,814,199	+		GFF4828	0.88	+0.9
4,814,199	+		GFF4828	0.88	-0.2
4,814,199	+		GFF4828	0.88	-1.4
4,814,199	+		GFF4828	0.88	+1.1
4,814,207	-		GFF4828	0.89	-0.9
4,814,207	-		GFF4828	0.89	+0.2
4,814,207	-		GFF4828	0.89	+0.5
4,814,207	-		GFF4828	0.89	+1.1
4,814,207	-		GFF4828	0.89	-1.3
4,814,207	-		GFF4828	0.89	-0.9
4,814,209	+		GFF4828	0.89	-1.9
4,814,217	-		GFF4828	0.89	+0.7
4,814,222	-		GFF4828	0.90	-1.7
4,814,231	-				-0.1
4,814,238	+				+1.8
4,814,238	+				-1.2
4,814,248	-				-0.5
4,814,248	-				+0.5
4,814,248	-				+0.2
4,814,287	-				+0.1
4,814,295	-				-0.5
4,814,296	-				-1.7
4,814,299	-				+0.7
4,814,299	-				+0.8
4,814,299	-				-1.5
4,814,304	-				+0.3
4,814,304	-				-0.9
4,814,304	-				-1.9
4,814,316	+				+1.3
4,814,331	+				+0.3
4,814,336	+				-0.3
4,814,360	+				+0.9
4,814,374	+				-1.7
4,814,374	+				+1.0
4,814,382	-		GFF4829	0.10	+0.2
4,814,391	-		GFF4829	0.12	+0.9
4,814,418	-		GFF4829	0.17	+0.4
4,814,478	+		GFF4829	0.28	-0.7
4,814,486	-		GFF4829	0.30	+1.3
4,814,486	-		GFF4829	0.30	+1.2
4,814,491	-		GFF4829	0.31	+1.1
4,814,499	+		GFF4829	0.32	-0.6
4,814,518	-		GFF4829	0.36	+1.1
4,814,522	-		GFF4829	0.36	-0.3
4,814,525	+		GFF4829	0.37	-0.1
4,814,530	+		GFF4829	0.38	+1.3
4,814,533	-		GFF4829	0.39	-0.2
4,814,561	-		GFF4829	0.44	+0.4
4,814,581	-		GFF4829	0.47	-0.2
4,814,584	-		GFF4829	0.48	+0.7
4,814,592	+		GFF4829	0.50	-0.7
4,814,601	+		GFF4829	0.51	-0.1
4,814,605	+		GFF4829	0.52	+0.7
4,814,623	-		GFF4829	0.55	-2.2
4,814,628	-		GFF4829	0.56	+0.7
4,814,641	-		GFF4829	0.59	+0.8
4,814,720	+		GFF4829	0.73	-0.2
4,814,721	+		GFF4829	0.74	+0.8
4,814,729	+		GFF4829	0.75	+0.8
4,814,729	+		GFF4829	0.75	+0.3
4,814,729	+		GFF4829	0.75	+1.8
4,814,729	-		GFF4829	0.75	-1.5
4,814,729	-		GFF4829	0.75	+0.1
4,814,729	-		GFF4829	0.75	+0.5
4,814,737	-		GFF4829	0.77	-0.1
4,814,737	-		GFF4829	0.77	-0.4
4,814,737	-		GFF4829	0.77	+0.3
4,814,739	+		GFF4829	0.77	+0.6
4,814,739	+		GFF4829	0.77	-0.2
4,814,800	+		GFF4829	0.88	-1.7
4,814,856	-				-1.0
4,814,878	+				-0.9
4,814,886	-				-0.9
4,814,902	+				+1.3
4,814,903	+				-0.2
4,814,908	+				-0.4
4,814,915	+				-0.9
4,814,916	-				-2.7
4,814,916	-				+0.1
4,814,923	+				+0.7
4,814,923	-				-1.8
4,814,940	+				+1.9
4,814,958	-				-0.0
4,814,988	+				+1.6
4,814,988	+				+0.1
4,814,996	-				+1.2
4,814,996	-				-0.2
4,815,003	+				-0.4
4,815,011	-				-1.2
4,815,028	+				+1.0
4,815,028	+				-0.7
4,815,028	+				+0.6
4,815,028	+				+0.2
4,815,028	+				-0.2
4,815,028	+				-0.4
4,815,033	+				-0.7
4,815,041	-				-0.4
4,815,061	-				-1.5
4,815,062	+				+0.6
4,815,070	-		GFF4830	0.10	+0.1
4,815,086	-		GFF4830	0.12	+0.0
4,815,088	+		GFF4830	0.12	+0.1
4,815,088	+		GFF4830	0.12	-0.2
4,815,088	+		GFF4830	0.12	+0.3
4,815,088	+		GFF4830	0.12	-1.8
4,815,088	+		GFF4830	0.12	+0.6
4,815,088	+		GFF4830	0.12	+0.7
4,815,088	+		GFF4830	0.12	-2.2
4,815,088	-		GFF4830	0.12	-0.4
4,815,112	+		GFF4830	0.14	-1.6
4,815,112	+		GFF4830	0.14	-0.5
4,815,112	+		GFF4830	0.14	+1.1
4,815,112	+		GFF4830	0.14	-1.0
4,815,120	-		GFF4830	0.14	+1.4
4,815,120	-		GFF4830	0.14	-1.1
4,815,120	-		GFF4830	0.14	-0.8
4,815,120	-		GFF4830	0.14	+0.4
4,815,120	-		GFF4830	0.14	-0.1
4,815,129	+		GFF4830	0.15	+0.3
4,815,129	+		GFF4830	0.15	-1.5
4,815,135	-		GFF4830	0.16	-0.2
4,815,135	-		GFF4830	0.16	+0.5
4,815,164	-		GFF4830	0.18	-0.6
4,815,174	+		GFF4830	0.19	+0.6
4,815,182	-		GFF4830	0.19	-1.6
4,815,184	+		GFF4830	0.20	-0.1
4,815,190	-		GFF4830	0.20	+1.1
4,815,198	+		GFF4830	0.21	+1.4
4,815,211	+		GFF4830	0.22	-0.1
4,815,232	+		GFF4830	0.24	+0.5
4,815,232	+		GFF4830	0.24	-1.0
4,815,232	+		GFF4830	0.24	-0.6
4,815,252	+		GFF4830	0.25	+0.5
4,815,260	-		GFF4830	0.26	+0.4
4,815,260	-		GFF4830	0.26	+0.8
4,815,267	-		GFF4830	0.26	-0.9
4,815,275	-		GFF4830	0.27	+2.2
4,815,277	+		GFF4830	0.27	-0.5
4,815,299	+		GFF4830	0.29	+0.1
4,815,302	+		GFF4830	0.29	+0.3
4,815,310	-		GFF4830	0.30	+0.7
4,815,310	-		GFF4830	0.30	-0.2
4,815,317	+		GFF4830	0.30	-2.0
4,815,318	-		GFF4830	0.31	-0.9
4,815,320	-		GFF4830	0.31	+0.8
4,815,343	-		GFF4830	0.33	-0.7
4,815,362	+		GFF4830	0.34	+0.7
4,815,372	+		GFF4830	0.35	-1.2
4,815,380	-		GFF4830	0.36	-0.2
4,815,382	+		GFF4830	0.36	+0.8
4,815,397	-		GFF4830	0.37	+0.2
4,815,401	+		GFF4830	0.37	-1.2
4,815,404	-		GFF4830	0.38	+1.7
4,815,404	-		GFF4830	0.38	+0.4
4,815,453	+		GFF4830	0.42	-0.6
4,815,468	+		GFF4830	0.43	-0.4
4,815,476	-		GFF4830	0.43	-0.2
4,815,478	+		GFF4830	0.44	+0.1
4,815,478	+		GFF4830	0.44	+0.8
4,815,478	+		GFF4830	0.44	+0.7
4,815,488	+		GFF4830	0.44	+1.5
4,815,494	+		GFF4830	0.45	-0.3
4,815,496	+		GFF4830	0.45	-0.8
4,815,497	+		GFF4830	0.45	+0.6
4,815,502	-		GFF4830	0.46	+0.3
4,815,504	-		GFF4830	0.46	-0.5
4,815,504	-		GFF4830	0.46	-1.0
4,815,504	-		GFF4830	0.46	+0.4
4,815,514	-		GFF4830	0.47	+1.5
4,815,541	+		GFF4830	0.49	+0.1
4,815,542	-		GFF4830	0.49	-1.4
4,815,547	-		GFF4830	0.49	+0.1
4,815,549	-		GFF4830	0.49	+1.3
4,815,557	+		GFF4830	0.50	+1.2
4,815,557	+		GFF4830	0.50	-1.0
4,815,565	-		GFF4830	0.51	+0.4
4,815,565	-		GFF4830	0.51	-0.9
4,815,565	-		GFF4830	0.51	+0.4
4,815,565	-		GFF4830	0.51	-0.5
4,815,594	+		GFF4830	0.53	+0.0
4,815,602	-		GFF4830	0.54	-1.1
4,815,602	-		GFF4830	0.54	-1.5
4,815,602	-		GFF4830	0.54	+0.3
4,815,618	+		GFF4830	0.55	-2.0
4,815,645	+		GFF4830	0.57	+0.6
4,815,654	+		GFF4830	0.58	+0.3
4,815,719	+		GFF4830	0.63	-2.0
4,815,722	-		GFF4830	0.63	-2.1
4,815,764	-		GFF4830	0.67	-0.1
4,815,764	-		GFF4830	0.67	-0.0
4,815,764	-		GFF4830	0.67	-0.2
4,815,769	+		GFF4830	0.67	+0.6
4,815,769	+		GFF4830	0.67	-0.5
4,815,783	+		GFF4830	0.68	+1.1
4,815,783	+		GFF4830	0.68	+0.3
4,815,817	+		GFF4830	0.71	+0.8
4,815,817	+		GFF4830	0.71	-0.2
4,815,819	+		GFF4830	0.71	+0.0
4,815,825	-		GFF4830	0.72	-0.5
4,815,827	+		GFF4830	0.72	+0.5
4,815,827	+		GFF4830	0.72	-0.4
4,815,835	-		GFF4830	0.73	+0.5
4,815,846	+		GFF4830	0.74	+0.1
4,815,846	+		GFF4830	0.74	+1.1
4,815,846	+		GFF4830	0.74	-1.0
4,815,846	+		GFF4830	0.74	-0.3
4,815,846	+		GFF4830	0.74	-0.4
4,815,854	-		GFF4830	0.74	+0.6
4,815,854	-		GFF4830	0.74	+0.1
4,815,854	-		GFF4830	0.74	+0.1
4,815,854	-		GFF4830	0.74	-0.5
4,815,854	-		GFF4830	0.74	-0.0
4,815,854	-		GFF4830	0.74	+0.4
4,815,854	-		GFF4830	0.74	+1.2
4,815,854	-		GFF4830	0.74	+0.6
4,815,854	-		GFF4830	0.74	+1.2
4,815,861	-		GFF4830	0.75	-1.2
4,815,891	-		GFF4830	0.77	-0.3
4,815,893	+		GFF4830	0.77	-0.6
4,815,900	+		GFF4830	0.78	+0.7
4,815,901	-		GFF4830	0.78	+1.4
4,815,903	-		GFF4830	0.78	-2.1
4,815,908	-		GFF4830	0.79	+0.0
4,815,913	-		GFF4830	0.79	+0.2
4,815,930	-		GFF4830	0.80	-1.9
4,815,937	+		GFF4830	0.81	-0.6
4,815,948	+		GFF4830	0.82	-0.4
4,815,955	+		GFF4830	0.82	-0.6
4,815,955	+		GFF4830	0.82	-0.2
4,815,955	+		GFF4830	0.82	+0.9
4,815,955	+		GFF4830	0.82	-2.2
4,815,963	-		GFF4830	0.83	+0.7
4,815,963	-		GFF4830	0.83	-1.6
4,815,973	+		GFF4830	0.84	+0.1
4,815,983	+		GFF4830	0.85	-0.6
4,815,991	-		GFF4830	0.85	-1.6
4,815,993	-		GFF4830	0.86	-0.9
4,816,018	-		GFF4830	0.88	+0.0
4,816,021	+		GFF4830	0.88	-0.9
4,816,021	+		GFF4830	0.88	-1.4
4,816,021	+		GFF4830	0.88	+0.2
4,816,026	+		GFF4830	0.88	+0.5
4,816,029	-		GFF4830	0.89	-0.5
4,816,033	+		GFF4830	0.89	+1.1
4,816,034	-		GFF4830	0.89	+0.5
4,816,041	-		GFF4830	0.89	+1.0
4,816,041	-		GFF4830	0.89	+1.4
4,816,041	-		GFF4830	0.89	-0.6
4,816,052	+				+0.9
4,816,052	+				+0.2
4,816,058	-				-0.2
4,816,060	-				-0.5
4,816,060	-				-0.2
4,816,063	-				+0.2
4,816,065	+				-0.9
4,816,065	+				+0.4
4,816,065	+				+0.8
4,816,073	-				+0.3
4,816,073	-				+0.8
4,816,073	-				-0.3
4,816,073	-				+0.4
4,816,117	+				-0.0
4,816,120	-				-0.2
4,816,122	+				+0.5
4,816,122	+				-2.4
4,816,122	+				+0.2
4,816,122	+				+0.4
4,816,125	-				+0.7
4,816,125	-				+0.4
4,816,130	-				-1.5
4,816,130	-				-0.6
4,816,130	-				+0.5
4,816,130	-				+0.7
4,816,149	-				+0.7
4,816,186	+				+0.6
4,816,187	-				+0.5
4,816,223	+				+0.9
4,816,231	-				-2.3
4,816,249	-				+0.5
4,816,253	-				-1.5
4,816,295	+				-0.6
4,816,303	+				+1.3
4,816,311	-				-0.0
4,816,311	-				-0.5
4,816,318	+				+0.7
4,816,328	-				+0.4
4,816,354	+				-0.2
4,816,375	+				+0.7
4,816,381	-				+0.5
4,816,383	-				-1.0
4,816,383	-				-1.5
4,816,412	-				+0.4
4,816,414	+				+0.1
4,816,414	+				-0.0
4,816,422	-		GFF4831	0.12	+1.2
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