Strain Fitness in Sphingobium sp. HT1-2 around GFF3991

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,023,660	-				+1.0
4,023,686	+				-2.2
4,023,708	-				-0.0
4,023,728	+				-1.2
4,023,728	+				+0.1
4,023,728	+				-1.2
4,023,728	+				-0.1
4,023,728	+				-2.8
4,023,728	+				+0.1
4,023,728	+				+0.0
4,023,728	+				-0.5
4,023,728	+				+0.5
4,023,728	+				+0.3
4,023,728	+				-2.5
4,023,728	+				+0.4
4,023,728	+				+1.0
4,023,728	+				-0.3
4,023,728	+				-0.7
4,023,736	-				+0.3
4,023,736	-				-0.1
4,023,736	-				+0.4
4,023,736	-				-1.0
4,023,736	-				-0.5
4,023,736	-				-0.4
4,023,736	-				+0.5
4,023,736	-				-1.8
4,023,736	-				+0.2
4,023,736	-				-0.4
4,023,822	-		GFF3989	0.18	+0.1
4,024,256	-				-0.4
4,024,273	+				+0.4
4,024,296	+				+0.8
4,024,354	-		GFF3990	0.31	+1.4
4,024,443	+		GFF3990	0.71	+0.7
4,024,443	+		GFF3990	0.71	-2.1
4,024,443	+		GFF3990	0.71	+0.7
4,024,443	+		GFF3990	0.71	+0.0
4,024,451	-		GFF3990	0.74	-2.5
4,024,451	-		GFF3990	0.74	-0.7
4,024,451	-		GFF3990	0.74	+1.0
4,024,451	-		GFF3990	0.74	+0.1
4,024,493	+				-1.3
4,024,501	-				+0.1
4,024,524	-				+0.5
4,024,528	+				-0.9
4,024,528	+				-2.1
4,024,546	+				-1.3
4,024,546	-				-0.8
4,024,546	-				-0.5
4,024,546	-				-1.9
4,024,570	-				-1.2
4,024,617	+				+0.8
4,024,617	+				-1.0
4,024,617	+				-0.6
4,024,625	-				-0.3
4,024,630	-				+0.4
4,024,662	+				-2.3
4,024,662	+				-0.5
4,024,670	-				-3.1
4,024,670	-				+0.3
4,024,670	-				+0.2
4,024,686	+				-0.3
4,024,692	+				+0.6
4,024,694	-				-0.1
4,024,694	-				+0.7
4,024,696	+				-1.5
4,024,697	+				-0.8
4,024,697	+				-1.5
4,024,697	+				-1.7
4,024,697	+				-0.1
4,024,699	-				+0.4
4,024,700	-				+0.7
4,024,705	-				-0.8
4,024,705	-				-1.5
4,024,705	-				+0.5
4,024,705	-				-0.4
4,024,705	-				-1.3
4,024,705	-				+0.1
4,024,705	-				-0.5
4,024,705	-				-1.9
4,024,705	-				-1.9
4,024,723	+				-0.1
4,024,731	-		GFF3991	0.11	-0.1
4,024,731	-		GFF3991	0.11	-0.7
4,024,791	-		GFF3991	0.19	+0.0
4,024,798	+		GFF3991	0.20	+0.3
4,024,798	+		GFF3991	0.20	+0.1
4,024,798	+		GFF3991	0.20	-0.2
4,024,806	-		GFF3991	0.21	+0.1
4,024,815	+		GFF3991	0.23	-1.2
4,024,821	-		GFF3991	0.24	-0.7
4,024,823	-		GFF3991	0.24	+1.0
4,024,827	+		GFF3991	0.24	-0.5
4,024,831	+		GFF3991	0.25	+0.5
4,024,836	+		GFF3991	0.26	+0.3
4,024,837	+		GFF3991	0.26	-2.3
4,024,844	-		GFF3991	0.27	+0.5
4,024,845	-		GFF3991	0.27	+0.6
4,024,866	-		GFF3991	0.30	+0.3
4,024,875	+		GFF3991	0.31	+0.5
4,024,892	+		GFF3991	0.34	+0.1
4,024,913	-		GFF3991	0.37	+0.3
4,024,913	-		GFF3991	0.37	-0.3
4,024,914	-		GFF3991	0.37	-0.1
4,024,914	-		GFF3991	0.37	+0.3
4,024,914	-		GFF3991	0.37	-0.0
4,024,923	+		GFF3991	0.38	-0.5
4,024,926	-		GFF3991	0.38	-0.1
4,024,945	+		GFF3991	0.41	+0.2
4,024,953	-		GFF3991	0.42	-0.1
4,024,953	-		GFF3991	0.42	-0.4
4,024,953	-		GFF3991	0.42	+0.8
4,024,953	-		GFF3991	0.42	+0.5
4,024,958	-		GFF3991	0.43	-0.1
4,024,958	-		GFF3991	0.43	-1.6
4,024,986	-		GFF3991	0.47	-0.8
4,024,989	+		GFF3991	0.47	-1.8
4,024,997	+		GFF3991	0.49	-0.8
4,025,016	+		GFF3991	0.51	+0.5
4,025,018	+		GFF3991	0.52	+0.3
4,025,024	-		GFF3991	0.52	-0.5
4,025,024	-		GFF3991	0.52	+0.2
4,025,026	-		GFF3991	0.53	+0.6
4,025,026	-		GFF3991	0.53	-1.1
4,025,045	-		GFF3991	0.55	+1.5
4,025,045	-		GFF3991	0.55	+0.3
4,025,053	+		GFF3991	0.57	-0.3
4,025,058	+		GFF3991	0.57	-1.1
4,025,061	-		GFF3991	0.58	-0.3
4,025,061	-		GFF3991	0.58	+0.3
4,025,084	+		GFF3991	0.61	+0.5
4,025,084	+		GFF3991	0.61	-1.1
4,025,084	+		GFF3991	0.61	-1.2
4,025,084	+		GFF3991	0.61	+0.1
4,025,084	+		GFF3991	0.61	-1.3
4,025,092	-		GFF3991	0.62	+1.0
4,025,092	-		GFF3991	0.62	-1.5
4,025,092	-		GFF3991	0.62	-1.8
4,025,092	-		GFF3991	0.62	+0.8
4,025,092	-		GFF3991	0.62	+0.2
4,025,105	+		GFF3991	0.64	-1.3
4,025,124	+		GFF3991	0.67	-0.1
4,025,134	-		GFF3991	0.68	+0.0
4,025,173	-		GFF3991	0.74	+0.1
4,025,179	-		GFF3991	0.75	+0.6
4,025,185	+		GFF3991	0.75	-1.2
4,025,185	-		GFF3991	0.75	+0.7
4,025,198	+		GFF3991	0.77	-1.0
4,025,199	+		GFF3991	0.77	-0.4
4,025,199	+		GFF3991	0.77	+0.3
4,025,199	+		GFF3991	0.77	-2.9
4,025,199	+		GFF3991	0.77	-0.3
4,025,199	+		GFF3991	0.77	+0.1
4,025,199	+		GFF3991	0.77	+0.1
4,025,204	+		GFF3991	0.78	-1.0
4,025,212	-		GFF3991	0.79	-0.3
4,025,217	-		GFF3991	0.80	-0.1
4,025,231	+		GFF3991	0.82	+0.1
4,025,240	+		GFF3991	0.83	-1.0
4,025,240	-		GFF3991	0.83	+1.3
4,025,240	-		GFF3991	0.83	+0.0
4,025,245	-		GFF3991	0.84	-2.9
4,025,257	-		GFF3991	0.86	-0.5
4,025,259	+		GFF3991	0.86	-0.2
4,025,271	-		GFF3991	0.88	-0.8
4,025,289	+				-0.6
4,025,294	+				-1.5
4,025,294	+				-1.1
4,025,302	-				-0.0
4,025,339	+				+0.1
4,025,351	+				-0.6
4,025,357	+				+0.0
4,025,357	+				+0.1
4,025,359	-				+0.2
4,025,365	-				-0.4
4,025,369	-				-0.9
4,025,369	-				+0.3
4,025,398	+				+0.8
4,025,399	+				+0.3
4,025,399	-				-0.3
4,025,404	+				-1.4
4,025,406	-				+0.4
4,025,406	-				+0.0
4,025,406	-				+1.2
4,025,406	-				-1.3
4,025,407	-				-0.9
4,025,407	-				-1.7
4,025,411	-				+0.4
4,025,412	-				-0.8
4,025,444	+				-0.5
4,025,444	+				+0.2
4,025,444	+				-0.3
4,025,444	+				+0.1
4,025,444	+				+1.0
4,025,444	+				-0.4
4,025,444	+				-0.9
4,025,447	-				+0.0
4,025,447	-				+1.0
4,025,452	-				+0.3
4,025,452	-				-0.1
4,025,452	-				-0.3
4,025,452	-				-0.5
4,025,452	-				+0.1
4,025,452	-				+0.8
4,025,452	-				+0.3
4,025,471	-				+0.4
4,025,476	-				-0.7
4,025,478	+				+1.1
4,025,478	+				-0.8
4,025,481	-				+0.3
4,025,486	-				-0.0
4,025,486	-				+1.1
4,025,486	-				-2.8
4,025,486	-				-0.1
4,025,486	-				+1.0
4,025,486	-				+0.7
4,025,494	-				-2.3
4,025,496	+				-0.2
4,025,496	+				+2.0
4,025,504	-				-0.5
4,025,505	-				-0.2
4,025,510	+				-2.3
4,025,510	+				+0.1
4,025,510	+				-0.9
4,025,511	-				+0.1
4,025,520	+				+0.5
4,025,552	+				-0.2
4,025,600	+		GFF3992	0.11	-0.6
4,025,612	-		GFF3992	0.12	+1.8
4,025,632	-		GFF3992	0.15	-1.1
4,025,656	+		GFF3992	0.18	-0.3
4,025,672	-		GFF3992	0.20	+0.8
4,025,674	+		GFF3992	0.21	-1.0
4,025,675	-		GFF3992	0.21	-0.8
4,025,677	+		GFF3992	0.21	-0.7
4,025,682	-		GFF3992	0.22	-1.1
4,025,682	-		GFF3992	0.22	-0.7
4,025,682	-		GFF3992	0.22	-0.5
4,025,682	-		GFF3992	0.22	-1.0
4,025,687	+		GFF3992	0.22	-1.2
4,025,698	+		GFF3992	0.24	+0.2
4,025,700	+		GFF3992	0.24	-1.0
4,025,705	+		GFF3992	0.25	+0.9
4,025,705	+		GFF3992	0.25	+0.2
4,025,712	-		GFF3992	0.25	+0.0
4,025,713	-		GFF3992	0.26	+0.2
4,025,713	-		GFF3992	0.26	+0.6
4,025,713	-		GFF3992	0.26	-0.3
4,025,719	+		GFF3992	0.26	-1.0
4,025,719	+		GFF3992	0.26	-0.6
4,025,723	+		GFF3992	0.27	+0.1
4,025,723	+		GFF3992	0.27	+0.1
4,025,727	-		GFF3992	0.27	+1.2
4,025,729	-		GFF3992	0.28	+1.3
4,025,731	-		GFF3992	0.28	+1.0
4,025,733	+		GFF3992	0.28	-0.5
4,025,738	+		GFF3992	0.29	+1.0
4,025,743	+		GFF3992	0.30	-0.5
4,025,746	-		GFF3992	0.30	+0.0
4,025,746	-		GFF3992	0.30	+0.8
4,025,746	-		GFF3992	0.30	-0.3
4,025,746	-		GFF3992	0.30	-2.3
4,025,750	-		GFF3992	0.30	+0.2
4,025,751	-		GFF3992	0.31	+0.9
4,025,751	-		GFF3992	0.31	-0.4
4,025,751	-		GFF3992	0.31	+1.2
4,025,751	-		GFF3992	0.31	+0.1
4,025,751	-		GFF3992	0.31	-0.6
4,025,753	+		GFF3992	0.31	+0.5
4,025,754	+		GFF3992	0.31	+0.1
4,025,761	-		GFF3992	0.32	-2.1
4,025,770	+		GFF3992	0.33	+0.6
4,025,771	+		GFF3992	0.33	+0.4
4,025,771	+		GFF3992	0.33	-3.2
4,025,779	-		GFF3992	0.34	-1.7
4,025,802	+		GFF3992	0.37	-0.2
4,025,802	+		GFF3992	0.37	-0.1
4,025,802	+		GFF3992	0.37	+1.1
4,025,808	-		GFF3992	0.38	-1.3
4,025,810	-		GFF3992	0.38	-1.3
4,025,810	-		GFF3992	0.38	+0.1
4,025,810	-		GFF3992	0.38	+0.4
4,025,819	-		GFF3992	0.39	+0.3
4,025,820	+		GFF3992	0.40	+0.8
4,025,823	+		GFF3992	0.40	-0.8
4,025,825	+		GFF3992	0.40	+0.3
4,025,830	+		GFF3992	0.41	-0.1
4,025,831	-		GFF3992	0.41	-1.5
4,025,831	-		GFF3992	0.41	+1.7
4,025,833	+		GFF3992	0.41	-0.9
4,025,833	+		GFF3992	0.41	-1.0
4,025,833	+		GFF3992	0.41	+0.3
4,025,833	-		GFF3992	0.41	-1.4
4,025,838	+		GFF3992	0.42	+1.4
4,025,841	-		GFF3992	0.42	-0.5
4,025,851	-		GFF3992	0.44	+0.1
4,025,852	-		GFF3992	0.44	-1.7
4,025,867	-		GFF3992	0.46	+0.9
4,025,878	+		GFF3992	0.47	+1.0
4,025,891	-		GFF3992	0.49	+0.5
4,025,899	+		GFF3992	0.50	-0.8
4,025,902	-		GFF3992	0.50	+0.6
4,025,904	+		GFF3992	0.51	-0.9
4,025,904	+		GFF3992	0.51	-0.1
4,025,907	+		GFF3992	0.51	-0.5
4,025,907	-		GFF3992	0.51	-0.8
4,025,909	+		GFF3992	0.51	-1.9
4,025,909	+		GFF3992	0.51	-1.0
4,025,912	-		GFF3992	0.52	-0.6
4,025,915	-		GFF3992	0.52	+0.2
4,025,917	-		GFF3992	0.52	+0.8
4,025,928	+		GFF3992	0.54	+0.6
4,025,928	+		GFF3992	0.54	+0.2
4,025,933	+		GFF3992	0.54	-2.6
4,025,936	-		GFF3992	0.55	-0.9
4,025,968	-		GFF3992	0.59	+0.0
4,026,002	+		GFF3992	0.63	+0.4
4,026,010	-		GFF3992	0.64	+0.1
4,026,032	-		GFF3992	0.67	+0.3
4,026,046	+		GFF3992	0.69	-1.3
4,026,055	+		GFF3992	0.70	-0.1
4,026,063	-		GFF3992	0.71	+0.6
4,026,065	+		GFF3992	0.72	-0.4
4,026,065	+		GFF3992	0.72	-0.6
4,026,065	+		GFF3992	0.72	+0.3
4,026,065	+		GFF3992	0.72	+0.5
4,026,065	+		GFF3992	0.72	+0.5
4,026,070	+		GFF3992	0.72	-0.2
4,026,070	+		GFF3992	0.72	+0.7
4,026,070	+		GFF3992	0.72	-1.5
4,026,070	+		GFF3992	0.72	-1.3
4,026,070	+		GFF3992	0.72	-0.0
4,026,070	+		GFF3992	0.72	-0.7
4,026,070	+		GFF3992	0.72	-1.5
4,026,070	+		GFF3992	0.72	-0.1
4,026,070	+		GFF3992	0.72	-1.4
4,026,070	+		GFF3992	0.72	-0.5
4,026,070	+		GFF3992	0.72	-0.2
4,026,070	+		GFF3992	0.72	-0.1
4,026,073	-		GFF3992	0.73	-0.5
4,026,075	+		GFF3992	0.73	-0.5
4,026,078	-		GFF3992	0.73	-0.3
4,026,078	-		GFF3992	0.73	-0.8
4,026,078	-		GFF3992	0.73	-1.4
4,026,078	-		GFF3992	0.73	+0.3
4,026,078	-		GFF3992	0.73	-0.4
4,026,078	-		GFF3992	0.73	-0.3
4,026,078	-		GFF3992	0.73	+0.5
4,026,078	-		GFF3992	0.73	-1.8
4,026,078	-		GFF3992	0.73	-2.4
4,026,081	+		GFF3992	0.74	-0.2
4,026,081	+		GFF3992	0.74	+1.3
4,026,083	+		GFF3992	0.74	+1.3
4,026,083	-		GFF3992	0.74	-0.1
4,026,091	+		GFF3992	0.75	+2.4
4,026,091	-		GFF3992	0.75	-0.7
4,026,096	+		GFF3992	0.76	+1.6
4,026,096	+		GFF3992	0.76	-1.7
4,026,096	+		GFF3992	0.76	-0.2
4,026,140	-		GFF3992	0.81	-1.1
4,026,140	-		GFF3992	0.81	-0.1
4,026,160	-		GFF3992	0.84	-0.2
4,026,238	+				+1.3
4,026,246	-				+0.6
4,026,266	+				-1.5
4,026,266	+				-1.4
4,026,266	+				-0.1
4,026,274	-				+0.4
4,026,274	-				-2.0
4,026,274	-				-0.3
4,026,279	-				+0.4
4,026,279	-				-1.1
4,026,279	-				-1.7
4,026,281	+				+0.4
4,026,284	-				-0.0
4,026,287	+				+0.3
4,026,294	-				+0.3
4,026,295	-				+0.6
4,026,302	+				-1.0
4,026,308	-				+0.1
4,026,312	+				+0.1
4,026,320	-				-0.2
4,026,327	-				-1.0
4,026,334	+				+0.7
4,026,336	+				-0.9