Strain Fitness in Sphingobium sp. HT1-2 around GFF3120

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,191,429	+		GFF3118	0.81	+0.1
3,191,430	+		GFF3118	0.81	-0.2
3,191,437	-		GFF3118	0.82	+0.5
3,191,446	+		GFF3118	0.82	-0.3
3,191,446	+		GFF3118	0.82	+0.3
3,191,446	+		GFF3118	0.82	+1.4
3,191,446	+		GFF3118	0.82	-0.4
3,191,446	+		GFF3118	0.82	-1.1
3,191,451	+		GFF3118	0.82	-0.1
3,191,454	-		GFF3118	0.82	+0.9
3,191,454	-		GFF3118	0.82	-0.9
3,191,454	-		GFF3118	0.82	-1.4
3,191,456	+		GFF3118	0.82	-1.8
3,191,456	+		GFF3118	0.82	+0.8
3,191,456	+		GFF3118	0.82	-1.3
3,191,456	+		GFF3118	0.82	-0.1
3,191,456	+		GFF3118	0.82	-1.1
3,191,464	-		GFF3118	0.83	-1.7
3,191,464	-		GFF3118	0.83	-0.6
3,191,464	-		GFF3118	0.83	-2.0
3,191,464	-		GFF3118	0.83	+0.4
3,191,470	-		GFF3118	0.83	-0.1
3,191,470	-		GFF3118	0.83	+0.6
3,191,498	+		GFF3118	0.84	+1.1
3,191,514	-		GFF3118	0.85	-0.7
3,191,516	-		GFF3118	0.85	+0.9
3,191,524	-		GFF3118	0.85	+0.6
3,191,528	+		GFF3118	0.85	-0.4
3,191,531	-		GFF3118	0.86	-0.2
3,191,534	+		GFF3118	0.86	-0.0
3,191,534	+		GFF3118	0.86	+0.3
3,191,535	-		GFF3118	0.86	-0.0
3,191,542	-		GFF3118	0.86	+0.0
3,191,542	-		GFF3118	0.86	+0.7
3,191,542	-		GFF3118	0.86	+0.7
3,191,564	-		GFF3118	0.87	-0.6
3,191,570	+		GFF3118	0.87	-0.4
3,191,571	+		GFF3118	0.87	+0.8
3,191,571	+		GFF3118	0.87	+0.3
3,191,575	+		GFF3118	0.87	+0.1
3,191,578	-		GFF3118	0.88	-0.2
3,191,578	-		GFF3118	0.88	+0.2
3,191,579	-		GFF3118	0.88	+0.3
3,191,580	+		GFF3118	0.88	+1.1
3,191,580	+		GFF3118	0.88	+0.3
3,191,588	-		GFF3118	0.88	-0.0
3,191,588	-		GFF3118	0.88	-0.4
3,191,606	-		GFF3118	0.89	-0.9
3,191,606	-		GFF3118	0.89	-0.1
3,191,607	+		GFF3118	0.89	+0.0
3,191,608	+		GFF3118	0.89	-0.0
3,191,608	+		GFF3118	0.89	+1.0
3,191,608	+		GFF3118	0.89	+0.7
3,191,608	+		GFF3118	0.89	-0.1
3,191,612	-		GFF3118	0.89	-2.3
3,191,616	+		GFF3118	0.89	+1.5
3,191,616	-		GFF3118	0.89	-1.6
3,191,616	-		GFF3118	0.89	+0.1
3,191,616	-		GFF3118	0.89	+0.2
3,191,616	-		GFF3118	0.89	+0.3
3,191,626	+		GFF3118	0.90	-1.0
3,191,635	+				-0.7
3,191,650	+				+0.2
3,191,650	+				+0.1
3,191,650	+				-0.4
3,191,658	-				+0.1
3,191,661	+				-0.2
3,191,677	-				-1.1
3,191,679	-				+0.4
3,191,680	+				+0.2
3,191,699	+				+0.3
3,191,705	+				+0.0
3,191,713	+				+0.2
3,191,713	+				-0.4
3,191,713	+				-1.0
3,191,721	-				-0.3
3,191,722	+				-0.6
3,191,730	-				-0.3
3,191,732	+				+0.8
3,191,732	+				-0.1
3,191,732	+				-1.6
3,191,732	+				-0.2
3,191,740	-				+0.2
3,191,740	-				-1.6
3,191,740	-				-0.9
3,191,754	-				+0.7
3,191,754	-				-0.2
3,191,775	-				+0.5
3,191,799	+				+0.7
3,191,815	-				+0.6
3,191,867	+				+0.4
3,191,875	-				-0.4
3,191,899	-				-1.2
3,191,899	-				-0.2
3,191,907	+				+0.9
3,191,925	+				-1.1
3,191,939	+				-0.3
3,191,939	+				-0.2
3,191,946	+				-1.3
3,191,946	+				+0.2
3,191,946	+				+1.0
3,191,946	+				-0.4
3,191,954	+				-1.4
3,191,954	-				-0.2
3,191,954	-				+0.4
3,191,954	-				-0.8
3,191,954	-				-0.5
3,191,954	-				-2.4
3,191,972	+				+0.1
3,191,993	-				+0.7
3,192,033	-		GFF3119	0.21	+0.0
3,192,034	+		GFF3119	0.21	+0.2
3,192,038	+		GFF3119	0.22	-0.8
3,192,038	+		GFF3119	0.22	+0.6
3,192,048	-		GFF3119	0.25	+0.1
3,192,048	-		GFF3119	0.25	-1.6
3,192,077	+		GFF3119	0.33	-1.7
3,192,109	+		GFF3119	0.42	-1.4
3,192,109	+		GFF3119	0.42	+1.1
3,192,109	+		GFF3119	0.42	-0.7
3,192,112	-		GFF3119	0.43	-0.6
3,192,112	-		GFF3119	0.43	-1.1
3,192,117	+		GFF3119	0.45	-0.1
3,192,124	+		GFF3119	0.46	-1.3
3,192,125	-		GFF3119	0.47	+0.1
3,192,127	-		GFF3119	0.47	-1.8
3,192,132	-		GFF3119	0.49	+1.0
3,192,164	-		GFF3119	0.58	+0.8
3,192,186	+		GFF3119	0.64	+0.6
3,192,194	-		GFF3119	0.66	+0.8
3,192,194	-		GFF3119	0.66	+0.5
3,192,230	+		GFF3119	0.76	+1.0
3,192,230	+		GFF3119	0.76	+0.7
3,192,230	+		GFF3119	0.76	-2.2
3,192,230	+		GFF3119	0.76	+0.9
3,192,230	+		GFF3119	0.76	-0.7
3,192,238	-		GFF3119	0.78	-0.7
3,192,238	-		GFF3119	0.78	+0.4
3,192,238	-		GFF3119	0.78	+1.3
3,192,238	-		GFF3119	0.78	+1.3
3,192,238	-		GFF3119	0.78	-1.1
3,192,254	+		GFF3119	0.83	+0.6
3,192,254	+		GFF3119	0.83	-0.2
3,192,262	-		GFF3119	0.85	-0.1
3,192,262	-		GFF3119	0.85	+0.3
3,192,262	-		GFF3119	0.85	+0.1
3,192,262	-		GFF3119	0.85	-0.1
3,192,262	-		GFF3119	0.85	-1.8
3,192,262	-		GFF3119	0.85	+0.2
3,192,262	-		GFF3119	0.85	+0.1
3,192,262	-		GFF3119	0.85	-0.4
3,192,268	-		GFF3119	0.87	+0.1
3,192,269	-		GFF3119	0.87	-0.6
3,192,299	+				+0.9
3,192,301	-				+0.1
3,192,317	+				+0.8
3,192,351	-				+1.9
3,192,392	+				-0.1
3,192,405	+				+0.0
3,192,421	+				-0.1
3,192,431	+				+0.4
3,192,431	+				-0.2
3,192,433	+				+0.2
3,192,436	+				-1.0
3,192,438	+				+0.4
3,192,439	-				-0.8
3,192,439	-				+0.3
3,192,445	+				-0.8
3,192,480	+				-1.8
3,192,539	-		GFF3120	0.10	-0.2
3,192,587	-		GFF3120	0.15	+0.0
3,192,630	+		GFF3120	0.19	+0.9
3,192,668	+		GFF3120	0.23	+0.3
3,192,681	-		GFF3120	0.24	+1.4
3,192,773	-		GFF3120	0.32	-1.6
3,192,824	-		GFF3120	0.37	-0.2
3,193,014	+		GFF3120	0.55	+1.5
3,193,020	+		GFF3120	0.55	+1.0
3,193,152	+		GFF3120	0.68	-0.2
3,193,206	+		GFF3120	0.73	-0.2
3,193,230	-		GFF3120	0.75	-0.7
3,193,320	-		GFF3120	0.83	+1.6
3,193,337	+		GFF3120	0.85	+0.6
3,193,345	-		GFF3120	0.86	-1.6
3,193,352	+		GFF3120	0.86	+0.4
3,193,480	-				-1.0
3,193,491	+				-0.2
3,193,499	+				+0.5
3,193,499	-				-1.0
3,193,499	-				-0.4
3,193,504	-				-1.4
3,193,518	-				-1.7
3,193,520	+				+0.8
3,193,520	+				+0.7
3,193,520	+				-1.5
3,193,520	+				-0.0
3,193,537	+				-0.7
3,193,557	-				+0.6
3,193,570	+				-0.3
3,193,600	-				-0.0
3,193,611	-				+0.8
3,193,611	-				-0.2
3,193,631	-				+1.1
3,193,631	-				+1.1
3,193,637	-				-1.8
3,193,659	-				-0.4
3,193,661	-				-1.6
3,193,664	+				-1.1
3,193,664	+				-0.6
3,193,705	-		GFF3121	0.16	-0.9
3,193,708	+		GFF3121	0.18	-0.6
3,193,745	-		GFF3121	0.38	+0.4
3,193,758	-		GFF3121	0.45	+1.3
3,193,758	-		GFF3121	0.45	+0.3
3,193,776	+		GFF3121	0.54	-0.2
3,193,792	+		GFF3121	0.63	-1.2
3,193,799	-		GFF3121	0.67	-0.2
3,193,801	+		GFF3121	0.68	-1.6
3,193,801	+		GFF3121	0.68	-0.1
3,193,806	+		GFF3121	0.70	-0.9
3,193,806	+		GFF3121	0.70	-1.7
3,193,806	+		GFF3121	0.70	+0.3
3,193,814	-		GFF3121	0.75	+0.8
3,193,814	-		GFF3121	0.75	-0.1
3,193,814	-		GFF3121	0.75	+0.4
3,193,814	-		GFF3121	0.75	-0.3
3,193,814	-		GFF3121	0.75	-0.7
3,193,814	-		GFF3121	0.75	-0.2
3,193,814	-		GFF3121	0.75	-0.2
3,193,819	-		GFF3121	0.77	+0.7
3,193,823	+		GFF3121	0.80	-0.3
3,193,847	+				-1.1
3,193,856	+				+1.0
3,193,856	+				+0.3
3,193,856	+				-0.1
3,193,856	+				-1.3
3,193,864	-				-0.6
3,193,893	-				-1.7
3,193,901	+				-0.3
3,193,901	+				-0.1
3,193,901	+				+0.4
3,193,901	+				+0.8
3,193,901	+				+0.3
3,193,909	-				+1.0
3,193,909	-				+0.3
3,193,909	-				-1.0
3,193,927	+				-0.7
3,193,945	-				+1.0
3,193,946	+				-2.7
3,193,955	-				-0.7
3,193,985	-				-1.0
3,194,000	+				+0.8
3,194,015	-				-0.7
3,194,026	+				+0.5
3,194,034	-				-0.6
3,194,044	-				-0.3
3,194,049	-				+0.5
3,194,083	+		GFF3122	0.10	+1.8
3,194,086	-		GFF3122	0.10	-1.1
3,194,099	-		GFF3122	0.11	+1.1
3,194,129	-		GFF3122	0.14	-0.4
3,194,131	+		GFF3122	0.14	-1.1
3,194,139	-		GFF3122	0.14	-1.6
3,194,173	+		GFF3122	0.17	-0.2
3,194,216	-		GFF3122	0.20	-0.3
3,194,230	+		GFF3122	0.21	+2.0
3,194,231	+		GFF3122	0.21	-0.2
3,194,238	+		GFF3122	0.22	-1.6
3,194,245	+		GFF3122	0.22	+1.1
3,194,274	+		GFF3122	0.24	+0.6
3,194,279	+		GFF3122	0.25	-0.6
3,194,292	-		GFF3122	0.26	+0.3
3,194,309	+		GFF3122	0.27	+0.5
3,194,326	+		GFF3122	0.28	-0.6
3,194,326	+		GFF3122	0.28	-0.8
3,194,326	+		GFF3122	0.28	-0.6
3,194,332	+		GFF3122	0.29	+0.3
3,194,334	-		GFF3122	0.29	+0.2
3,194,354	+		GFF3122	0.30	-0.1
3,194,354	+		GFF3122	0.30	+0.3
3,194,362	-		GFF3122	0.31	-2.0
3,194,362	-		GFF3122	0.31	-2.1
3,194,362	-		GFF3122	0.31	-0.9
3,194,362	-		GFF3122	0.31	-1.2
3,194,362	-		GFF3122	0.31	+0.0
3,194,362	-		GFF3122	0.31	+1.0
3,194,371	-		GFF3122	0.32	-0.8
3,194,396	-		GFF3122	0.34	-2.1
3,194,409	+		GFF3122	0.35	+1.4
3,194,410	+		GFF3122	0.35	-1.1
3,194,412	-		GFF3122	0.35	-2.2
3,194,449	-		GFF3122	0.38	+1.6
3,194,456	+		GFF3122	0.38	-1.1
3,194,460	-		GFF3122	0.38	-1.3
3,194,466	+		GFF3122	0.39	-1.0
3,194,496	+		GFF3122	0.41	-1.6
3,194,496	+		GFF3122	0.41	+0.3
3,194,496	+		GFF3122	0.41	-0.9
3,194,496	+		GFF3122	0.41	-2.5