Strain Fitness in Sphingobium sp. HT1-2 around GFF3043

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,118,918	+		GFF3042	0.52	-0.7
3,118,918	+		GFF3042	0.52	-1.5
3,118,923	+		GFF3042	0.52	+0.8
3,118,927	+		GFF3042	0.52	+0.2
3,118,985	-		GFF3042	0.55	-1.5
3,118,995	-		GFF3042	0.56	-0.4
3,118,995	-		GFF3042	0.56	-0.8
3,118,995	-		GFF3042	0.56	-0.0
3,118,995	-		GFF3042	0.56	-0.7
3,119,029	+		GFF3042	0.57	-1.0
3,119,029	+		GFF3042	0.57	-1.3
3,119,042	-		GFF3042	0.58	+0.5
3,119,042	-		GFF3042	0.58	-1.4
3,119,069	+		GFF3042	0.59	+1.4
3,119,081	+		GFF3042	0.60	+0.5
3,119,081	+		GFF3042	0.60	-0.8
3,119,082	+		GFF3042	0.60	-1.5
3,119,089	-		GFF3042	0.61	-2.4
3,119,089	-		GFF3042	0.61	+0.4
3,119,091	+		GFF3042	0.61	-0.9
3,119,098	+		GFF3042	0.61	-0.8
3,119,098	+		GFF3042	0.61	+1.5
3,119,104	-		GFF3042	0.61	-0.2
3,119,106	+		GFF3042	0.61	-0.1
3,119,106	+		GFF3042	0.61	+1.5
3,119,106	+		GFF3042	0.61	+0.0
3,119,106	-		GFF3042	0.61	+1.8
3,119,106	-		GFF3042	0.61	-0.1
3,119,106	-		GFF3042	0.61	-0.8
3,119,106	-		GFF3042	0.61	-0.5
3,119,113	+		GFF3042	0.62	-2.5
3,119,114	-		GFF3042	0.62	-0.8
3,119,114	-		GFF3042	0.62	+1.3
3,119,114	-		GFF3042	0.62	-1.2
3,119,114	-		GFF3042	0.62	-2.4
3,119,116	-		GFF3042	0.62	-1.0
3,119,154	-		GFF3042	0.64	-0.6
3,119,172	-		GFF3042	0.65	-0.5
3,119,196	+		GFF3042	0.66	+0.1
3,119,196	+		GFF3042	0.66	+0.1
3,119,196	+		GFF3042	0.66	+0.8
3,119,196	+		GFF3042	0.66	-0.4
3,119,199	-		GFF3042	0.66	-1.1
3,119,203	-		GFF3042	0.66	-1.2
3,119,204	-		GFF3042	0.66	-1.2
3,119,220	+		GFF3042	0.67	+0.6
3,119,220	+		GFF3042	0.67	-0.1
3,119,230	-		GFF3042	0.68	+0.4
3,119,259	-		GFF3042	0.69	+0.0
3,119,268	-		GFF3042	0.70	-0.7
3,119,271	+		GFF3042	0.70	-0.7
3,119,271	+		GFF3042	0.70	-0.8
3,119,271	+		GFF3042	0.70	-0.8
3,119,271	+		GFF3042	0.70	+1.4
3,119,271	+		GFF3042	0.70	+0.5
3,119,271	+		GFF3042	0.70	+1.1
3,119,271	+		GFF3042	0.70	-1.3
3,119,271	+		GFF3042	0.70	-0.8
3,119,271	+		GFF3042	0.70	+0.9
3,119,271	+		GFF3042	0.70	-1.0
3,119,271	+		GFF3042	0.70	-1.3
3,119,279	-		GFF3042	0.70	-0.1
3,119,279	-		GFF3042	0.70	+0.6
3,119,279	-		GFF3042	0.70	-0.6
3,119,279	-		GFF3042	0.70	+0.2
3,119,279	-		GFF3042	0.70	-1.7
3,119,279	-		GFF3042	0.70	+0.6
3,119,279	-		GFF3042	0.70	+0.7
3,119,292	+		GFF3042	0.71	+0.6
3,119,313	+		GFF3042	0.72	+0.1
3,119,313	+		GFF3042	0.72	+0.7
3,119,321	-		GFF3042	0.72	-1.1
3,119,321	-		GFF3042	0.72	-1.3
3,119,346	+		GFF3042	0.74	+0.5
3,119,346	+		GFF3042	0.74	-1.8
3,119,346	+		GFF3042	0.74	-1.3
3,119,354	-		GFF3042	0.74	-0.3
3,119,377	-		GFF3042	0.75	-1.3
3,119,377	-		GFF3042	0.75	+1.0
3,119,395	+		GFF3042	0.76	+0.3
3,119,401	-		GFF3042	0.76	+0.4
3,119,424	-		GFF3042	0.78	-0.2
3,119,438	+		GFF3042	0.78	+1.6
3,119,447	-		GFF3042	0.79	+0.5
3,119,454	+		GFF3042	0.79	+0.7
3,119,460	-		GFF3042	0.79	+0.2
3,119,475	+		GFF3042	0.80	+1.0
3,119,480	+		GFF3042	0.80	-1.6
3,119,480	+		GFF3042	0.80	-2.1
3,119,480	+		GFF3042	0.80	+0.9
3,119,480	+		GFF3042	0.80	-0.7
3,119,482	+		GFF3042	0.81	-0.3
3,119,482	+		GFF3042	0.81	-0.4
3,119,488	-		GFF3042	0.81	+0.9
3,119,490	-		GFF3042	0.81	-1.5
3,119,495	+		GFF3042	0.81	+1.4
3,119,503	+		GFF3042	0.82	+1.8
3,119,503	-		GFF3042	0.82	+1.0
3,119,503	-		GFF3042	0.82	+0.2
3,119,521	+		GFF3042	0.82	-1.1
3,119,531	+		GFF3042	0.83	-1.5
3,119,551	+		GFF3042	0.84	-0.5
3,119,552	-		GFF3042	0.84	-0.2
3,119,567	-		GFF3042	0.85	-2.3
3,119,577	+		GFF3042	0.85	+1.2
3,119,577	+		GFF3042	0.85	-2.1
3,119,577	-		GFF3042	0.85	+1.0
3,119,582	+		GFF3042	0.86	+0.2
3,119,590	-		GFF3042	0.86	+1.4
3,119,592	+		GFF3042	0.86	+0.6
3,119,599	+		GFF3042	0.86	+0.7
3,119,615	+		GFF3042	0.87	-0.5
3,119,640	+		GFF3042	0.89	-0.7
3,119,658	+		GFF3042	0.89	-0.3
3,119,670	+				-0.8
3,119,675	+				-0.5
3,119,675	-				-0.2
3,119,678	-				-0.1
3,119,678	-				-0.9
3,119,712	+				-1.8
3,119,712	+				-1.5
3,119,715	-				-0.6
3,119,720	-				+0.8
3,119,720	-				-0.7
3,119,720	-				-0.5
3,119,750	-				-2.1
3,119,752	+				-0.3
3,119,769	+				+0.3
3,119,769	+				+0.1
3,119,769	+				+0.4
3,119,769	+				+0.5
3,119,769	+				-0.5
3,119,769	+				+0.8
3,119,777	-				+0.2
3,119,777	-				-2.4
3,119,777	-				+0.2
3,119,792	+				+0.6
3,119,792	+				-1.1
3,119,812	-				-0.7
3,119,831	-				-1.3
3,119,835	+				-0.1
3,119,835	+				-0.7
3,119,835	+				+0.9
3,119,843	-				-1.5
3,119,852	-				-0.6
3,119,853	-				-0.1
3,119,866	-				+0.0
3,119,866	-				+1.1
3,119,881	-				+0.6
3,119,883	+				-1.1
3,119,883	+				+0.1
3,119,883	+				+0.4
3,119,893	+				-0.5
3,119,901	-				-0.2
3,119,919	+				+0.6
3,119,961	+				-1.1
3,119,976	+				+0.1
3,119,976	+				+0.9
3,119,976	+				+0.4
3,119,976	+				-1.1
3,119,984	-				+0.9
3,119,984	-				-1.1
3,120,008	+				-0.7
3,120,030	-				+0.9
3,120,041	+		GFF3043	0.10	+0.3
3,120,049	+		GFF3043	0.11	-0.7
3,120,049	-		GFF3043	0.11	+0.9
3,120,054	+		GFF3043	0.11	+0.0
3,120,057	-		GFF3043	0.11	-1.8
3,120,074	+		GFF3043	0.13	+1.8
3,120,074	+		GFF3043	0.13	-0.1
3,120,074	+		GFF3043	0.13	-0.2
3,120,082	-		GFF3043	0.13	+2.5
3,120,127	-		GFF3043	0.17	-0.3
3,120,134	+		GFF3043	0.17	+0.6
3,120,134	+		GFF3043	0.17	-0.2
3,120,137	+		GFF3043	0.18	-1.2
3,120,142	+		GFF3043	0.18	+0.9
3,120,145	-		GFF3043	0.18	-0.6
3,120,155	-		GFF3043	0.19	-1.0
3,120,155	-		GFF3043	0.19	-2.2
3,120,155	-		GFF3043	0.19	+1.1
3,120,162	+		GFF3043	0.19	-0.6
3,120,260	+		GFF3043	0.27	-0.4
3,120,268	-		GFF3043	0.28	-0.2
3,120,282	+		GFF3043	0.29	-0.4
3,120,293	+		GFF3043	0.30	-1.2
3,120,352	+		GFF3043	0.34	+0.1
3,120,352	+		GFF3043	0.34	+0.9
3,120,360	-		GFF3043	0.35	-0.4
3,120,360	-		GFF3043	0.35	-0.4
3,120,360	-		GFF3043	0.35	-1.3
3,120,362	+		GFF3043	0.35	+0.7
3,120,371	+		GFF3043	0.35	-1.1
3,120,379	-		GFF3043	0.36	+1.0
3,120,386	+		GFF3043	0.37	+0.2
3,120,386	+		GFF3043	0.37	+0.2
3,120,407	+		GFF3043	0.38	+0.4
3,120,421	+		GFF3043	0.39	+0.5
3,120,429	-		GFF3043	0.40	+0.5
3,120,441	+		GFF3043	0.41	+0.1
3,120,443	+		GFF3043	0.41	-1.7
3,120,443	+		GFF3043	0.41	+0.1
3,120,456	-		GFF3043	0.42	-0.9
3,120,500	+		GFF3043	0.45	-0.3
3,120,511	+		GFF3043	0.46	+0.1
3,120,511	+		GFF3043	0.46	-0.2
3,120,519	-		GFF3043	0.47	-1.7
3,120,519	-		GFF3043	0.47	+1.5
3,120,519	-		GFF3043	0.47	-0.3
3,120,519	-		GFF3043	0.47	-0.1
3,120,534	-		GFF3043	0.48	-0.8
3,120,542	+		GFF3043	0.49	-0.5
3,120,542	+		GFF3043	0.49	+0.3
3,120,543	-		GFF3043	0.49	+0.0
3,120,543	-		GFF3043	0.49	-1.1
3,120,552	+		GFF3043	0.49	+0.9
3,120,554	+		GFF3043	0.49	+0.2
3,120,554	+		GFF3043	0.49	-0.8
3,120,554	+		GFF3043	0.49	-0.1
3,120,554	+		GFF3043	0.49	-0.4
3,120,561	+		GFF3043	0.50	-1.4
3,120,562	-		GFF3043	0.50	-2.4
3,120,562	-		GFF3043	0.50	-0.1
3,120,562	-		GFF3043	0.50	-1.0
3,120,562	-		GFF3043	0.50	+1.6
3,120,562	-		GFF3043	0.50	+0.3
3,120,562	-		GFF3043	0.50	-0.7
3,120,562	-		GFF3043	0.50	-1.8
3,120,570	-		GFF3043	0.51	+0.4
3,120,572	+		GFF3043	0.51	+0.6
3,120,577	+		GFF3043	0.51	+0.6
3,120,580	-		GFF3043	0.51	-0.9
3,120,582	+		GFF3043	0.52	-1.1
3,120,582	+		GFF3043	0.52	-0.9
3,120,582	+		GFF3043	0.52	-0.6
3,120,590	-		GFF3043	0.52	+1.1
3,120,595	-		GFF3043	0.53	-0.2
3,120,598	+		GFF3043	0.53	-0.3
3,120,598	+		GFF3043	0.53	+1.3
3,120,603	+		GFF3043	0.53	-1.0
3,120,606	-		GFF3043	0.53	+1.1
3,120,613	+		GFF3043	0.54	+0.9
3,120,616	-		GFF3043	0.54	-0.9
3,120,639	-		GFF3043	0.56	-0.7
3,120,646	+		GFF3043	0.56	-0.5
3,120,677	+		GFF3043	0.59	+0.4
3,120,688	+		GFF3043	0.60	+0.5
3,120,698	+		GFF3043	0.60	-1.3
3,120,701	-		GFF3043	0.61	-0.4
3,120,707	+		GFF3043	0.61	-0.7
3,120,714	+		GFF3043	0.62	+0.2
3,120,722	+		GFF3043	0.62	-0.7
3,120,722	-		GFF3043	0.62	-1.8
3,120,722	-		GFF3043	0.62	+1.3
3,120,722	-		GFF3043	0.62	-0.3
3,120,722	-		GFF3043	0.62	+0.4
3,120,722	-		GFF3043	0.62	-1.6
3,120,722	-		GFF3043	0.62	-0.6
3,120,742	+		GFF3043	0.64	-0.7
3,120,748	+		GFF3043	0.64	+0.0
3,120,750	-		GFF3043	0.64	+1.3
3,120,750	-		GFF3043	0.64	-0.8
3,120,751	-		GFF3043	0.65	-1.4
3,120,755	-		GFF3043	0.65	-0.0
3,120,756	-		GFF3043	0.65	+1.1
3,120,766	+		GFF3043	0.66	-0.8
3,120,774	-		GFF3043	0.66	+1.6
3,120,774	-		GFF3043	0.66	-1.2
3,120,774	-		GFF3043	0.66	+1.6
3,120,791	+		GFF3043	0.68	-0.4
3,120,832	-		GFF3043	0.71	-1.4
3,120,834	+		GFF3043	0.71	-0.3
3,120,899	-		GFF3043	0.76	+0.4
3,120,936	-		GFF3043	0.79	-1.7
3,120,947	-		GFF3043	0.80	+0.2
3,120,948	-		GFF3043	0.80	-1.3
3,120,948	-		GFF3043	0.80	+0.3
3,121,004	+		GFF3043	0.84	+0.3
3,121,015	+		GFF3043	0.85	-0.2
3,121,015	+		GFF3043	0.85	+1.2
3,121,015	+		GFF3043	0.85	+0.3
3,121,023	-		GFF3043	0.85	-1.0
3,121,023	-		GFF3043	0.85	+0.3
3,121,045	+		GFF3043	0.87	+0.6
3,121,056	+		GFF3043	0.88	-1.3
3,121,056	-		GFF3043	0.88	-0.4
3,121,109	+				+0.3
3,121,117	-				-1.0
3,121,140	+				+1.8
3,121,143	+				-0.7
3,121,159	-				-0.1
3,121,168	-				+0.8
3,121,178	-				+0.1
3,121,201	-				+0.2
3,121,201	-				+0.5
3,121,201	-				-1.6
3,121,248	-				-1.0
3,121,265	-				-1.4
3,121,414	+				-0.6
3,121,422	-		GFF3044	0.11	+0.3
3,121,432	-		GFF3044	0.12	-0.1
3,121,447	-		GFF3044	0.14	+0.1
3,121,449	-		GFF3044	0.15	+0.4
3,121,528	+		GFF3044	0.26	-1.2
3,121,528	+		GFF3044	0.26	+0.1
3,121,529	-		GFF3044	0.26	-0.3
3,121,529	-		GFF3044	0.26	-1.3
3,121,530	+		GFF3044	0.27	+0.8
3,121,538	-		GFF3044	0.28	-1.8
3,121,586	+		GFF3044	0.35	-1.4
3,121,607	+		GFF3044	0.38	-0.1
3,121,704	-		GFF3044	0.53	-2.0
3,121,754	+		GFF3044	0.60	-1.3
3,121,754	+		GFF3044	0.60	+0.3
3,121,754	+		GFF3044	0.60	-1.4
3,121,764	+		GFF3044	0.61	+0.8
3,121,772	-		GFF3044	0.63	-1.3
3,121,772	-		GFF3044	0.63	-0.7
3,121,772	-		GFF3044	0.63	+0.3
3,121,772	-		GFF3044	0.63	-0.1
3,121,772	-		GFF3044	0.63	-1.3
3,121,790	+		GFF3044	0.65	+0.3
3,121,818	+		GFF3044	0.69	-0.1
3,121,828	+		GFF3044	0.71	-1.7
3,121,835	+		GFF3044	0.72	+0.4
3,121,844	+		GFF3044	0.73	+0.8
3,121,862	-		GFF3044	0.76	+1.2
3,121,864	+		GFF3044	0.76	-0.7
3,121,930	-		GFF3044	0.86	-1.3
3,121,973	-				+0.9
3,122,016	+				+0.1
3,122,016	-				+0.2
3,122,034	-				+0.4
3,122,039	+				-0.8
3,122,050	-				-0.2
3,122,056	+				-1.7
3,122,059	-				+0.7
3,122,059	-				-0.4
3,122,059	-				-1.7
3,122,068	+				+0.8
3,122,099	-				+0.4
3,122,155	-		GFF3045	0.10	-0.6
3,122,156	+		GFF3045	0.11	+1.4
3,122,158	+		GFF3045	0.11	-0.2
3,122,158	+		GFF3045	0.11	+0.1
3,122,158	+		GFF3045	0.11	+0.4
3,122,158	+		GFF3045	0.11	-0.3
3,122,158	+		GFF3045	0.11	-0.4
3,122,163	+		GFF3045	0.12	-1.8
3,122,166	-		GFF3045	0.12	+0.1
3,122,166	-		GFF3045	0.12	+0.6
3,122,166	-		GFF3045	0.12	-0.3
3,122,205	+		GFF3045	0.20	-1.1
3,122,213	-		GFF3045	0.22	-0.5
3,122,213	-		GFF3045	0.22	-0.6
3,122,213	-		GFF3045	0.22	-1.0
3,122,213	-		GFF3045	0.22	-1.3