Strain Fitness in Sphingobium sp. HT1-2 around GFF1047

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,051,766	-		GFF1046	0.12	-1.4
1,051,768	+		GFF1046	0.12	+0.7
1,051,768	+		GFF1046	0.12	+0.8
1,051,776	-		GFF1046	0.13	+0.3
1,051,776	-		GFF1046	0.13	+0.3
1,051,776	-		GFF1046	0.13	+0.3
1,051,776	-		GFF1046	0.13	-3.5
1,051,776	-		GFF1046	0.13	-0.9
1,051,776	-		GFF1046	0.13	-0.7
1,051,785	+		GFF1046	0.13	-0.1
1,051,798	-		GFF1046	0.15	+0.1
1,051,813	+		GFF1046	0.16	-1.2
1,051,827	+		GFF1046	0.18	+0.5
1,051,835	-		GFF1046	0.18	-0.4
1,051,839	+		GFF1046	0.19	+0.6
1,051,839	+		GFF1046	0.19	+0.2
1,051,839	+		GFF1046	0.19	-0.9
1,051,839	+		GFF1046	0.19	+0.3
1,051,847	-		GFF1046	0.20	-0.8
1,051,847	-		GFF1046	0.20	+0.7
1,051,901	+		GFF1046	0.25	-0.5
1,051,910	-		GFF1046	0.26	+1.0
1,051,910	-		GFF1046	0.26	+0.1
1,051,929	+		GFF1046	0.28	-0.7
1,051,929	+		GFF1046	0.28	-0.3
1,051,929	+		GFF1046	0.28	+1.3
1,051,930	-		GFF1046	0.28	-1.7
1,051,937	-		GFF1046	0.28	-0.1
1,051,937	-		GFF1046	0.28	-0.6
1,051,937	-		GFF1046	0.28	+0.6
1,051,946	-		GFF1046	0.29	+0.3
1,051,951	-		GFF1046	0.30	+0.7
1,051,951	-		GFF1046	0.30	+0.8
1,051,956	-		GFF1046	0.30	+0.7
1,051,956	-		GFF1046	0.30	-1.4
1,051,968	-		GFF1046	0.31	+0.0
1,051,973	-		GFF1046	0.32	-0.1
1,051,973	-		GFF1046	0.32	-0.3
1,051,973	-		GFF1046	0.32	+1.2
1,051,977	+		GFF1046	0.32	-0.6
1,052,006	+		GFF1046	0.35	-0.0
1,052,006	+		GFF1046	0.35	+0.0
1,052,006	+		GFF1046	0.35	+0.5
1,052,014	-		GFF1046	0.36	-1.2
1,052,014	-		GFF1046	0.36	-0.8
1,052,014	-		GFF1046	0.36	-0.7
1,052,014	-		GFF1046	0.36	-1.2
1,052,014	-		GFF1046	0.36	+0.3
1,052,014	-		GFF1046	0.36	-0.3
1,052,014	-		GFF1046	0.36	-2.3
1,052,014	-		GFF1046	0.36	-0.3
1,052,014	-		GFF1046	0.36	-0.1
1,052,018	+		GFF1046	0.36	+1.7
1,052,039	-		GFF1046	0.38	-0.2
1,052,040	-		GFF1046	0.39	-1.2
1,052,064	-		GFF1046	0.41	-1.1
1,052,082	-		GFF1046	0.43	+0.8
1,052,095	+		GFF1046	0.44	-1.4
1,052,114	-		GFF1046	0.46	-1.1
1,052,125	+		GFF1046	0.47	+0.6
1,052,133	-		GFF1046	0.48	+0.4
1,052,133	-		GFF1046	0.48	-0.7
1,052,133	-		GFF1046	0.48	+0.4
1,052,140	+		GFF1046	0.48	+0.6
1,052,143	-		GFF1046	0.49	+0.4
1,052,143	-		GFF1046	0.49	-0.2
1,052,146	-		GFF1046	0.49	-0.9
1,052,148	-		GFF1046	0.49	-0.6
1,052,153	+		GFF1046	0.50	-0.4
1,052,161	-		GFF1046	0.50	-0.2
1,052,161	-		GFF1046	0.50	-1.4
1,052,161	-		GFF1046	0.50	+1.1
1,052,163	+		GFF1046	0.51	-0.7
1,052,175	-		GFF1046	0.52	-2.1
1,052,185	+		GFF1046	0.53	+0.3
1,052,185	-		GFF1046	0.53	-0.9
1,052,193	-		GFF1046	0.54	+0.4
1,052,207	-		GFF1046	0.55	-2.1
1,052,207	-		GFF1046	0.55	-0.9
1,052,245	+		GFF1046	0.59	-1.1
1,052,245	+		GFF1046	0.59	-1.0
1,052,245	+		GFF1046	0.59	+0.3
1,052,254	+		GFF1046	0.60	+1.4
1,052,254	+		GFF1046	0.60	-0.8
1,052,254	+		GFF1046	0.60	+0.2
1,052,254	+		GFF1046	0.60	+0.8
1,052,256	+		GFF1046	0.60	+1.0
1,052,256	+		GFF1046	0.60	-0.7
1,052,258	-		GFF1046	0.60	+0.1
1,052,262	-		GFF1046	0.60	+0.4
1,052,262	-		GFF1046	0.60	-1.4
1,052,262	-		GFF1046	0.60	-1.2
1,052,262	-		GFF1046	0.60	+1.4
1,052,271	+		GFF1046	0.61	-0.3
1,052,279	-		GFF1046	0.62	-0.6
1,052,291	-		GFF1046	0.63	+0.4
1,052,350	+		GFF1046	0.69	+0.8
1,052,350	+		GFF1046	0.69	+0.5
1,052,355	+		GFF1046	0.70	-0.3
1,052,358	-		GFF1046	0.70	-1.3
1,052,360	+		GFF1046	0.70	-1.3
1,052,360	+		GFF1046	0.70	-2.4
1,052,365	+		GFF1046	0.71	+0.3
1,052,365	+		GFF1046	0.71	+0.5
1,052,368	-		GFF1046	0.71	-0.0
1,052,368	-		GFF1046	0.71	-0.9
1,052,373	-		GFF1046	0.71	+0.4
1,052,373	-		GFF1046	0.71	-0.6
1,052,382	+		GFF1046	0.72	-0.7
1,052,389	+		GFF1046	0.73	+0.8
1,052,392	-		GFF1046	0.73	-0.3
1,052,395	-		GFF1046	0.74	-1.1
1,052,397	-		GFF1046	0.74	+0.1
1,052,397	-		GFF1046	0.74	-1.5
1,052,412	+		GFF1046	0.75	-0.3
1,052,420	-		GFF1046	0.76	+0.5
1,052,425	-		GFF1046	0.77	+0.3
1,052,467	-		GFF1046	0.81	-1.2
1,052,468	-		GFF1046	0.81	+0.7
1,052,511	-		GFF1046	0.85	+0.1
1,052,515	+		GFF1046	0.85	-0.2
1,052,515	+		GFF1046	0.85	-1.1
1,052,515	+		GFF1046	0.85	+0.6
1,052,515	+		GFF1046	0.85	-1.7
1,052,520	+		GFF1046	0.86	-1.7
1,052,520	+		GFF1046	0.86	-0.2
1,052,523	-		GFF1046	0.86	-0.1
1,052,538	-		GFF1046	0.88	-1.2
1,052,603	-				+0.3
1,052,631	+				-1.9
1,052,633	-				-0.4
1,052,663	+				-0.8
1,052,760	+				+1.2
1,052,837	+				-0.3
1,053,045	-				-1.8
1,053,045	-				-0.7
1,053,045	-				-1.4
1,053,087	+		GFF1047	0.11	+0.1
1,053,095	-		GFF1047	0.11	-1.3
1,053,153	+		GFF1047	0.13	-0.4
1,053,153	+		GFF1047	0.13	-0.2
1,053,202	+		GFF1047	0.15	-1.3
1,053,210	-		GFF1047	0.15	-0.7
1,053,225	+		GFF1047	0.16	+0.4
1,053,233	-		GFF1047	0.16	-1.6
1,053,305	+		GFF1047	0.18	-0.5
1,053,318	-		GFF1047	0.19	+0.3
1,053,334	+		GFF1047	0.19	-0.8
1,053,358	-		GFF1047	0.20	+1.5
1,053,391	+		GFF1047	0.21	+0.4
1,053,454	+		GFF1047	0.23	-1.5
1,053,469	-		GFF1047	0.24	+0.3
1,053,491	-		GFF1047	0.25	-0.5
1,053,510	+		GFF1047	0.25	+1.6
1,053,550	+		GFF1047	0.27	-1.5
1,053,577	+		GFF1047	0.28	+0.8
1,053,624	-		GFF1047	0.29	-1.2
1,053,632	-		GFF1047	0.30	+0.2
1,053,680	+		GFF1047	0.31	+2.1
1,053,685	+		GFF1047	0.31	-0.3
1,053,688	-		GFF1047	0.31	+0.3
1,053,698	+		GFF1047	0.32	+0.3
1,053,711	-		GFF1047	0.32	-0.6
1,053,739	-		GFF1047	0.33	-1.2
1,053,775	+		GFF1047	0.34	-0.1
1,053,783	-		GFF1047	0.35	-1.3
1,053,783	-		GFF1047	0.35	+0.5
1,053,783	-		GFF1047	0.35	-0.7
1,053,794	-		GFF1047	0.35	+0.1
1,053,804	+		GFF1047	0.35	-1.2
1,053,804	+		GFF1047	0.35	-0.7
1,053,806	+		GFF1047	0.35	+0.8
1,053,812	-		GFF1047	0.36	+0.4
1,053,817	-		GFF1047	0.36	-1.6
1,053,823	+		GFF1047	0.36	-0.7
1,053,846	-		GFF1047	0.37	+0.8
1,053,895	+		GFF1047	0.38	+0.4
1,053,904	-		GFF1047	0.39	-0.2
1,053,915	+		GFF1047	0.39	+0.4
1,053,923	+		GFF1047	0.39	-1.2
1,053,966	+		GFF1047	0.41	+0.5
1,053,968	-		GFF1047	0.41	+1.0
1,053,974	-		GFF1047	0.41	-0.9
1,054,025	+		GFF1047	0.43	+0.9
1,054,034	-		GFF1047	0.43	-1.5
1,054,069	+		GFF1047	0.44	+0.3
1,054,070	+		GFF1047	0.44	+0.4
1,054,088	+		GFF1047	0.45	-1.5
1,054,147	+		GFF1047	0.47	-0.2
1,054,174	+		GFF1047	0.48	-1.1
1,054,182	-		GFF1047	0.48	+0.9
1,054,263	+		GFF1047	0.51	-2.1
1,054,286	+		GFF1047	0.52	+0.0
1,054,286	+		GFF1047	0.52	+0.1
1,054,286	+		GFF1047	0.52	-0.7
1,054,294	+		GFF1047	0.52	+0.6
1,054,301	-		GFF1047	0.52	+0.7
1,054,325	-		GFF1047	0.53	-1.6
1,054,383	-		GFF1047	0.55	-0.3
1,054,383	-		GFF1047	0.55	+0.3
1,054,405	+		GFF1047	0.56	+1.0
1,054,415	+		GFF1047	0.56	+1.0
1,054,423	-		GFF1047	0.56	+1.0
1,054,423	-		GFF1047	0.56	+0.2
1,054,423	-		GFF1047	0.56	-1.7
1,054,425	+		GFF1047	0.56	+0.4
1,054,436	+		GFF1047	0.57	-1.5
1,054,450	+		GFF1047	0.57	+1.6
1,054,542	-		GFF1047	0.60	-1.3
1,054,625	+		GFF1047	0.63	-0.3
1,054,630	+		GFF1047	0.63	+0.5
1,054,788	-		GFF1047	0.69	+0.8
1,054,788	-		GFF1047	0.69	+0.3
1,054,790	+		GFF1047	0.69	-0.6
1,054,798	+		GFF1047	0.69	-1.2
1,054,798	+		GFF1047	0.69	-0.9
1,054,798	-		GFF1047	0.69	+1.1
1,054,844	+		GFF1047	0.71	+0.3
1,054,851	+		GFF1047	0.71	-0.0
1,054,876	-		GFF1047	0.72	+0.6
1,054,917	-		GFF1047	0.73	+0.2
1,054,921	-		GFF1047	0.73	+0.4
1,055,006	+		GFF1047	0.76	-1.7
1,055,023	+		GFF1047	0.77	-0.4
1,055,033	+		GFF1047	0.77	-0.3
1,055,063	-		GFF1047	0.78	+0.4
1,055,063	-		GFF1047	0.78	+0.2
1,055,071	-		GFF1047	0.78	-1.7
1,055,078	-		GFF1047	0.79	+0.1
1,055,123	-		GFF1047	0.80	-1.4
1,055,168	-		GFF1047	0.82	-0.3
1,055,235	-		GFF1047	0.84	+0.1
1,055,235	-		GFF1047	0.84	-0.3
1,055,237	+		GFF1047	0.84	+1.9
1,055,291	-		GFF1047	0.86	+1.0
1,055,291	-		GFF1047	0.86	+0.3
1,055,299	+		GFF1047	0.86	+1.7
1,055,336	-		GFF1047	0.87	+0.3
1,055,348	-		GFF1047	0.88	+1.1
1,055,368	+		GFF1047	0.88	-1.3
1,055,383	+		GFF1047	0.89	+0.8
1,055,383	+		GFF1047	0.89	-1.2
1,055,383	+		GFF1047	0.89	+1.2
1,055,391	-		GFF1047	0.89	-1.6
1,055,391	-		GFF1047	0.89	-1.2
1,055,428	-				-0.3
1,055,440	-				-1.2
1,055,593	+				+1.5
1,055,599	-				+0.1
1,055,607	+				-0.2
1,055,608	-				-2.1
1,055,612	+				-0.4
1,055,639	-				+1.4
1,055,641	+				-0.7
1,055,641	+				-0.1
1,055,680	+				+1.2
1,055,680	+				+0.4
1,055,688	-				-0.6
1,055,700	+				-0.7
1,055,708	-				+0.3
1,055,735	+		GFF1048	0.13	-1.7
1,055,736	-		GFF1048	0.14	+0.7
1,055,753	-		GFF1048	0.28	+0.0
1,055,753	-		GFF1048	0.28	+0.4
1,055,766	+		GFF1048	0.39	+1.4
1,055,766	+		GFF1048	0.39	+1.4
1,055,766	+		GFF1048	0.39	+0.3
1,055,766	+		GFF1048	0.39	-1.0
1,055,774	-		GFF1048	0.46	+0.4
1,055,774	-		GFF1048	0.46	-0.2
1,055,774	-		GFF1048	0.46	+2.1
1,055,774	-		GFF1048	0.46	-1.7
1,055,774	-		GFF1048	0.46	+0.4
1,055,782	-		GFF1048	0.53	-0.7
1,055,782	-		GFF1048	0.53	+0.1
1,055,782	-		GFF1048	0.53	-0.4
1,055,804	+		GFF1048	0.72	-0.4
1,055,812	-		GFF1048	0.79	+0.4
1,055,812	-		GFF1048	0.79	-0.2
1,055,828	-				-1.1
1,055,830	+				-0.6
1,055,836	-				+1.1
1,055,845	+				-0.1
1,055,855	-				-0.5
1,055,869	-				+0.4
1,055,902	-				-0.3
1,056,029	+				-0.7
1,056,047	-				-0.2
1,056,054	+				-2.3
1,056,054	+				+1.2
1,056,062	-				-0.3
1,056,062	-				-1.7
1,056,062	-				+0.2
1,056,083	+				+1.0
1,056,099	+				+0.3
1,056,121	+				-0.8
1,056,121	+				+0.1
1,056,121	+				+0.1
1,056,121	+				+0.3
1,056,131	+				+0.3
1,056,131	+				-1.7
1,056,134	-				-0.7
1,056,139	-				-0.7
1,056,146	+				+2.0
1,056,149	-				-1.3
1,056,216	+		GFF1049	0.21	+1.2
1,056,242	+		GFF1049	0.26	-0.1
1,056,250	-		GFF1049	0.27	+0.5
1,056,252	+		GFF1049	0.28	-0.9
1,056,252	+		GFF1049	0.28	+0.7
1,056,260	-		GFF1049	0.29	+0.6
1,056,265	-		GFF1049	0.30	+0.4
1,056,270	+		GFF1049	0.31	-0.8
1,056,273	-		GFF1049	0.32	+0.2
1,056,301	-		GFF1049	0.37	+0.0
1,056,318	+		GFF1049	0.40	-0.2
1,056,320	+		GFF1049	0.40	-0.5
1,056,326	-		GFF1049	0.41	-0.2
1,056,328	+		GFF1049	0.42	+1.3
1,056,328	-		GFF1049	0.42	-1.1
1,056,336	-		GFF1049	0.43	-1.9
1,056,336	-		GFF1049	0.43	+0.4
1,056,347	+		GFF1049	0.45	-0.2
1,056,347	+		GFF1049	0.45	-1.7
1,056,354	+		GFF1049	0.47	-0.2
1,056,354	+		GFF1049	0.47	+0.0
1,056,357	-		GFF1049	0.47	-0.2
1,056,368	+		GFF1049	0.49	-1.3
1,056,469	+		GFF1049	0.68	+0.6
1,056,474	+		GFF1049	0.69	+0.0
1,056,493	+		GFF1049	0.72	+0.9
1,056,493	+		GFF1049	0.72	-0.7
1,056,493	+		GFF1049	0.72	-0.1
1,056,497	-		GFF1049	0.73	+1.1
1,056,497	-		GFF1049	0.73	-1.3
1,056,508	+		GFF1049	0.75	-0.2
1,056,516	-		GFF1049	0.76	+1.0
1,056,531	-		GFF1049	0.79	-0.7
1,056,531	-		GFF1049	0.79	+0.9
1,056,531	-		GFF1049	0.79	-1.5
1,056,541	+		GFF1049	0.81	-1.7
1,056,541	+		GFF1049	0.81	+0.5
1,056,541	+		GFF1049	0.81	+0.0
1,056,541	+		GFF1049	0.81	+1.2
1,056,541	+		GFF1049	0.81	+1.0
1,056,541	+		GFF1049	0.81	-0.7
1,056,541	+		GFF1049	0.81	-0.9
1,056,541	+		GFF1049	0.81	-0.2
1,056,546	+		GFF1049	0.82	+1.3
1,056,549	-		GFF1049	0.83	+1.4
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