Strain Fitness in Sphingobium sp. HT1-2 around GFF4780

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,772,413	-		GFF4778	0.49	-0.0
4,772,417	-		GFF4778	0.50	-1.3
4,772,419	+		GFF4778	0.50	-3.4
4,772,427	-		GFF4778	0.51	-0.6
4,772,467	+		GFF4778	0.54	-0.8
4,772,467	+		GFF4778	0.54	-2.4
4,772,467	+		GFF4778	0.54	-1.5
4,772,473	-		GFF4778	0.55	+0.5
4,772,473	-		GFF4778	0.55	-1.5
4,772,473	-		GFF4778	0.55	+0.2
4,772,475	-		GFF4778	0.55	-1.6
4,772,475	-		GFF4778	0.55	-2.1
4,772,488	+		GFF4778	0.56	+0.2
4,772,492	+		GFF4778	0.57	+0.3
4,772,492	+		GFF4778	0.57	-0.8
4,772,493	+		GFF4778	0.57	-0.5
4,772,493	+		GFF4778	0.57	-0.9
4,772,500	-		GFF4778	0.57	-0.0
4,772,500	-		GFF4778	0.57	-0.4
4,772,501	-		GFF4778	0.57	-1.3
4,772,501	-		GFF4778	0.57	-0.6
4,772,501	-		GFF4778	0.57	-2.8
4,772,540	-		GFF4778	0.61	-0.9
4,772,545	+		GFF4778	0.61	-1.5
4,772,545	+		GFF4778	0.61	-1.2
4,772,553	+		GFF4778	0.62	-0.8
4,772,555	-		GFF4778	0.62	-0.8
4,772,561	-		GFF4778	0.63	-1.8
4,772,566	+		GFF4778	0.63	+0.3
4,772,572	+		GFF4778	0.64	+1.0
4,772,574	-		GFF4778	0.64	-2.1
4,772,594	+		GFF4778	0.66	+0.8
4,772,597	-		GFF4778	0.66	+0.8
4,772,599	+		GFF4778	0.66	-1.9
4,772,627	+		GFF4778	0.69	-1.4
4,772,640	-		GFF4778	0.70	-1.6
4,772,705	+		GFF4778	0.76	-3.1
4,772,705	-		GFF4778	0.76	+0.5
4,772,722	+		GFF4778	0.78	-1.2
4,772,737	+		GFF4778	0.79	-0.7
4,772,745	-		GFF4778	0.80	-0.4
4,772,758	-		GFF4778	0.81	-1.5
4,772,811	-		GFF4778	0.86	-2.6
4,772,813	+		GFF4778	0.86	-2.9
4,772,836	+		GFF4778	0.88	-0.2
4,772,844	-		GFF4778	0.89	-1.1
4,772,844	-		GFF4778	0.89	+0.2
4,772,854	+				-0.7
4,772,854	+				-1.2
4,772,854	+				-2.2
4,772,854	+				+1.2
4,772,854	+				+0.2
4,772,854	+				-0.3
4,772,854	+				-1.4
4,772,854	+				-1.6
4,772,854	+				-1.4
4,772,854	+				-0.8
4,772,854	+				-1.2
4,772,854	+				-0.4
4,772,862	-				-0.7
4,772,862	-				+0.4
4,772,862	-				-1.6
4,772,862	-				-0.6
4,772,862	-				+1.3
4,772,862	-				+0.0
4,772,862	-				-2.1
4,772,862	-				-0.8
4,772,862	-				-0.1
4,772,862	-				-0.7
4,772,862	-				-0.9
4,772,881	+				+1.2
4,772,881	+				-0.9
4,772,887	+				+0.3
4,772,887	+				-2.3
4,772,889	-				-0.8
4,772,892	+				-0.7
4,772,895	-				-1.8
4,772,905	+				-1.1
4,772,905	+				+1.0
4,772,912	-				-0.3
4,772,913	-				-2.4
4,772,913	-				-2.8
4,772,913	-				-2.5
4,772,981	-				-0.4
4,773,003	+				-0.1
4,773,003	+				-0.0
4,773,004	+				+0.2
4,773,011	-				-0.6
4,773,073	+		GFF4779	0.13	+0.2
4,773,076	-		GFF4779	0.14	+0.1
4,773,081	-		GFF4779	0.16	-1.6
4,773,116	+		GFF4779	0.27	-1.3
4,773,116	+		GFF4779	0.27	-0.2
4,773,116	+		GFF4779	0.27	+0.2
4,773,124	-		GFF4779	0.29	-0.4
4,773,124	-		GFF4779	0.29	-1.8
4,773,124	-		GFF4779	0.29	-0.7
4,773,124	-		GFF4779	0.29	-1.3
4,773,124	-		GFF4779	0.29	-1.3
4,773,124	-		GFF4779	0.29	-0.2
4,773,126	+		GFF4779	0.30	-0.1
4,773,151	+		GFF4779	0.37	-0.2
4,773,165	+		GFF4779	0.42	-1.6
4,773,167	+		GFF4779	0.42	+0.5
4,773,173	-		GFF4779	0.44	-1.3
4,773,198	+		GFF4779	0.52	-0.4
4,773,227	-		GFF4779	0.61	+0.1
4,773,280	-		GFF4779	0.77	-1.7
4,773,302	+		GFF4779	0.83	-0.9
4,773,316	-		GFF4779	0.88	-1.6
4,773,323	-				-1.2
4,773,357	-				-0.1
4,773,357	-				-2.5
4,773,396	+				-1.0
4,773,411	+				-0.6
4,773,414	-				-1.6
4,773,444	-				-2.9
4,773,452	-				-0.7
4,773,461	-				-1.8
4,773,461	-				-0.8
4,773,467	-				-0.5
4,773,535	-		GFF4780	0.21	+0.8
4,773,540	-		GFF4780	0.22	+0.3
4,773,548	+		GFF4780	0.24	-1.1
4,773,555	-		GFF4780	0.25	-1.9
4,773,575	+		GFF4780	0.28	-1.0
4,773,591	+		GFF4780	0.31	-1.8
4,773,634	-		GFF4780	0.39	-0.4
4,773,642	-		GFF4780	0.40	-0.7
4,773,644	+		GFF4780	0.40	+0.5
4,773,644	+		GFF4780	0.40	-1.4
4,773,652	-		GFF4780	0.42	-3.6
4,773,652	-		GFF4780	0.42	+0.3
4,773,652	-		GFF4780	0.42	+0.9
4,773,718	+		GFF4780	0.53	-0.6
4,773,719	-		GFF4780	0.53	-0.2
4,773,736	-		GFF4780	0.56	-1.4
4,773,736	-		GFF4780	0.56	+0.2
4,773,762	-		GFF4780	0.61	-1.8
4,773,768	+		GFF4780	0.62	-0.1
4,773,773	+		GFF4780	0.63	-0.7
4,773,780	+		GFF4780	0.64	+0.2
4,773,788	-		GFF4780	0.65	-2.8
4,773,807	-		GFF4780	0.69	-2.1
4,773,816	+		GFF4780	0.70	-2.8
4,773,816	+		GFF4780	0.70	-1.2
4,773,816	+		GFF4780	0.70	-0.6
4,773,843	-		GFF4780	0.75	-1.6
4,773,869	+		GFF4780	0.80	-0.8
4,773,869	+		GFF4780	0.80	-0.4
4,773,869	+		GFF4780	0.80	-0.7
4,773,869	+		GFF4780	0.80	+1.1
4,773,874	+		GFF4780	0.80	-1.2
4,773,877	-		GFF4780	0.81	-0.6
4,773,877	-		GFF4780	0.81	-1.0
4,773,877	-		GFF4780	0.81	+1.2
4,773,879	+		GFF4780	0.81	-1.9
4,773,879	+		GFF4780	0.81	+1.0
4,773,879	+		GFF4780	0.81	-1.0
4,773,884	+		GFF4780	0.82	-2.6
4,773,887	-		GFF4780	0.83	-2.5
4,773,887	-		GFF4780	0.83	-0.8
4,773,887	-		GFF4780	0.83	-1.5
4,773,887	-		GFF4780	0.83	-0.6
4,773,887	-		GFF4780	0.83	-0.7
4,773,953	-				-0.2
4,773,962	+				-2.4
4,773,965	-				-0.5
4,773,976	+				-0.7
4,773,983	-				+0.5
4,773,983	-				-1.0
4,773,995	-				+0.4
4,774,027	+				-0.2
4,774,035	-				-0.1
4,774,067	+				+0.1
4,774,068	-				+0.1
4,774,073	-				-0.6
4,774,075	-				-1.4
4,774,075	-				-2.6
4,774,427	+				-0.2
4,774,432	-				+0.6
4,774,435	-				-0.8
4,774,435	-				+0.2
4,774,435	-				+0.2
4,774,443	+				-1.8
4,774,469	+				-1.3
4,774,470	-				-0.0
4,774,474	+				-1.4
4,774,474	+				-1.9
4,774,474	+				-1.3
4,774,474	+				-0.8
4,774,477	-				+0.1
4,774,482	+				-1.0
4,774,482	-				+0.2
4,774,482	-				+0.3
4,774,482	-				-0.6
4,774,482	-				+0.2
4,774,482	-				-0.4
4,774,499	-				-2.1
4,774,499	-				-0.4
4,774,506	-				+0.3
4,774,527	+				+0.1
4,774,537	-				-1.6
4,774,537	-				-0.3
4,774,596	-		GFF4782	0.11	-1.1
4,774,614	-		GFF4782	0.14	-0.6
4,774,614	-		GFF4782	0.14	-0.9
4,774,627	+		GFF4782	0.16	-1.2
4,774,627	+		GFF4782	0.16	-1.0
4,774,627	+		GFF4782	0.16	+0.6
4,774,635	-		GFF4782	0.17	-1.0
4,774,635	-		GFF4782	0.17	-0.2
4,774,660	-		GFF4782	0.20	-0.7
4,774,679	-		GFF4782	0.22	-2.0
4,774,685	+		GFF4782	0.23	+0.1
4,774,685	+		GFF4782	0.23	-1.2
4,774,685	+		GFF4782	0.23	-1.0
4,774,685	+		GFF4782	0.23	-1.1
4,774,685	+		GFF4782	0.23	-0.3
4,774,693	-		GFF4782	0.24	+0.5
4,774,693	-		GFF4782	0.24	+0.4
4,774,693	-		GFF4782	0.24	-1.7
4,774,706	-		GFF4782	0.26	-0.7
4,774,713	-		GFF4782	0.27	-1.0
4,774,713	-		GFF4782	0.27	-0.7
4,774,715	+		GFF4782	0.27	-0.9
4,774,715	+		GFF4782	0.27	-2.8
4,774,715	+		GFF4782	0.27	-1.4
4,774,723	-		GFF4782	0.28	-1.6
4,774,723	-		GFF4782	0.28	+0.1
4,774,723	-		GFF4782	0.28	-1.5
4,774,740	+		GFF4782	0.30	+0.6
4,774,743	-		GFF4782	0.31	-0.0
4,774,743	-		GFF4782	0.31	-1.8
4,774,748	-		GFF4782	0.31	-1.6
4,774,748	-		GFF4782	0.31	+1.1
4,774,748	-		GFF4782	0.31	+0.2
4,774,748	-		GFF4782	0.31	-1.0
4,774,753	+		GFF4782	0.32	-0.3
4,774,756	-		GFF4782	0.33	-2.5
4,774,758	+		GFF4782	0.33	-1.1
4,774,782	+		GFF4782	0.36	-0.6
4,774,785	-		GFF4782	0.36	+0.6
4,774,785	-		GFF4782	0.36	-1.3
4,774,785	-		GFF4782	0.36	-1.0
4,774,786	+		GFF4782	0.36	-1.7
4,774,787	+		GFF4782	0.37	+0.2
4,774,787	+		GFF4782	0.37	-0.6
4,774,787	+		GFF4782	0.37	-1.1
4,774,788	-		GFF4782	0.37	-0.6
4,774,790	-		GFF4782	0.37	-1.6
4,774,790	-		GFF4782	0.37	-2.0
4,774,790	-		GFF4782	0.37	-0.5
4,774,795	-		GFF4782	0.38	-1.9
4,774,795	-		GFF4782	0.38	+0.3
4,774,801	+		GFF4782	0.38	-2.7
4,774,809	-		GFF4782	0.40	+0.9
4,774,830	+		GFF4782	0.42	-0.2
4,774,830	+		GFF4782	0.42	-0.6
4,774,838	-		GFF4782	0.43	-0.2
4,774,838	-		GFF4782	0.43	-1.5
4,774,846	-		GFF4782	0.44	-1.1
4,774,846	-		GFF4782	0.44	-0.0
4,774,851	+		GFF4782	0.45	+0.0
4,774,859	+		GFF4782	0.46	-0.0
4,774,859	+		GFF4782	0.46	+0.3
4,774,867	-		GFF4782	0.47	+0.0
4,774,867	-		GFF4782	0.47	-0.1
4,774,867	-		GFF4782	0.47	-2.0
4,774,869	+		GFF4782	0.47	+1.5
4,774,869	+		GFF4782	0.47	-0.9
4,774,879	+		GFF4782	0.49	-0.3
4,774,903	-		GFF4782	0.52	+1.0
4,774,909	+		GFF4782	0.53	-0.3
4,774,927	+		GFF4782	0.55	-2.1
4,774,934	-		GFF4782	0.56	+0.2
4,774,937	+		GFF4782	0.56	+0.6
4,774,969	+		GFF4782	0.61	-1.2
4,774,969	+		GFF4782	0.61	-0.8
4,774,973	-		GFF4782	0.61	-0.5
4,774,975	+		GFF4782	0.61	-0.6
4,774,977	-		GFF4782	0.62	-1.3
4,774,977	-		GFF4782	0.62	-1.7
4,774,977	-		GFF4782	0.62	+0.6