Strain Fitness in Sphingobium sp. HT1-2 around GFF4066

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,078,774	-		GFF4064	0.42	+0.2
4,078,792	+		GFF4064	0.44	+0.7
4,078,799	-		GFF4064	0.45	+1.3
4,078,800	-		GFF4064	0.46	+0.4
4,078,809	-		GFF4064	0.47	-0.3
4,078,823	+		GFF4064	0.49	-1.4
4,078,828	+		GFF4064	0.50	+0.4
4,078,836	-		GFF4064	0.51	+0.8
4,078,847	-		GFF4064	0.53	+0.1
4,078,852	+		GFF4064	0.54	-0.5
4,078,852	+		GFF4064	0.54	+0.8
4,078,855	-		GFF4064	0.54	-0.6
4,078,855	-		GFF4064	0.54	-0.5
4,078,860	-		GFF4064	0.55	-1.0
4,078,860	-		GFF4064	0.55	+1.3
4,078,875	-		GFF4064	0.57	-2.2
4,078,880	+		GFF4064	0.58	+0.3
4,078,885	+		GFF4064	0.59	-0.5
4,078,885	+		GFF4064	0.59	+1.6
4,078,893	-		GFF4064	0.60	+0.6
4,078,895	+		GFF4064	0.60	+1.6
4,078,911	+		GFF4064	0.63	+0.7
4,078,959	+		GFF4064	0.70	-0.6
4,078,959	+		GFF4064	0.70	+0.4
4,078,960	+		GFF4064	0.70	+0.2
4,078,960	+		GFF4064	0.70	+0.8
4,078,960	+		GFF4064	0.70	+1.5
4,078,966	+		GFF4064	0.71	+0.0
4,078,966	-		GFF4064	0.71	+0.3
4,078,968	-		GFF4064	0.71	-0.6
4,078,968	-		GFF4064	0.71	+2.5
4,078,968	-		GFF4064	0.71	-0.3
4,078,968	-		GFF4064	0.71	-0.5
4,078,968	-		GFF4064	0.71	+0.4
4,078,977	+		GFF4064	0.73	-0.7
4,078,985	-		GFF4064	0.74	-0.1
4,078,994	+		GFF4064	0.75	-0.1
4,079,004	-		GFF4064	0.77	-1.9
4,079,007	-		GFF4064	0.77	-1.6
4,079,007	-		GFF4064	0.77	-0.3
4,079,026	+		GFF4064	0.80	+0.3
4,079,049	+		GFF4064	0.84	+0.2
4,079,052	-		GFF4064	0.84	-0.2
4,079,122	+				-0.6
4,079,131	+				+1.5
4,079,150	+				-0.6
4,079,158	-				+1.0
4,079,175	+				-0.1
4,079,183	-				-0.4
4,079,187	+				+0.7
4,079,192	+				-2.5
4,079,192	+				-1.0
4,079,192	+				+0.5
4,079,192	+				-0.4
4,079,192	+				+0.6
4,079,192	+				+0.0
4,079,192	+				+0.5
4,079,192	+				-1.3
4,079,195	-				-0.2
4,079,195	-				+0.2
4,079,197	+				+1.4
4,079,197	+				-0.8
4,079,200	-				-0.4
4,079,200	-				-0.4
4,079,200	-				-0.2
4,079,205	-				-0.0
4,079,205	-				+0.5
4,079,206	+				-0.4
4,079,210	-				-0.2
4,079,210	-				+0.3
4,079,215	+				-0.6
4,079,256	-		GFF4065	0.16	-0.2
4,079,258	+		GFF4065	0.17	-0.5
4,079,280	+		GFF4065	0.21	-0.4
4,079,295	+		GFF4065	0.24	-0.8
4,079,302	+		GFF4065	0.25	+0.7
4,079,321	+		GFF4065	0.29	+1.2
4,079,329	-		GFF4065	0.31	+0.8
4,079,334	-		GFF4065	0.32	-0.2
4,079,336	+		GFF4065	0.32	-1.7
4,079,399	-		GFF4065	0.45	-1.3
4,079,409	+		GFF4065	0.46	+0.2
4,079,417	-		GFF4065	0.48	+1.1
4,079,419	+		GFF4065	0.48	+1.3
4,079,424	+		GFF4065	0.49	+1.2
4,079,424	+		GFF4065	0.49	-0.1
4,079,427	-		GFF4065	0.50	+0.5
4,079,432	-		GFF4065	0.51	-0.2
4,079,434	-		GFF4065	0.51	+0.6
4,079,445	+		GFF4065	0.54	-0.6
4,079,466	-		GFF4065	0.58	-1.6
4,079,466	-		GFF4065	0.58	-0.6
4,079,466	-		GFF4065	0.58	+0.8
4,079,468	+		GFF4065	0.58	-1.1
4,079,535	+		GFF4065	0.71	-1.4
4,079,563	-		GFF4065	0.77	-1.8
4,079,574	-		GFF4065	0.79	+0.2
4,079,576	+		GFF4065	0.79	-0.7
4,079,576	+		GFF4065	0.79	-2.0
4,079,584	-		GFF4065	0.81	-0.2
4,079,584	-		GFF4065	0.81	+0.5
4,079,584	-		GFF4065	0.81	-2.5
4,079,584	-		GFF4065	0.81	+0.9
4,079,584	-		GFF4065	0.81	-0.5
4,079,584	-		GFF4065	0.81	-2.5
4,079,584	-		GFF4065	0.81	-0.7
4,079,603	+		GFF4065	0.85	-1.1
4,079,631	+				+0.2
4,079,634	-				+0.2
4,079,649	-				-0.6
4,079,684	-				-0.4
4,079,698	-				-0.2
4,079,705	+				+1.3
4,079,706	+				+0.6
4,079,716	+				-1.1
4,079,736	+				+0.2
4,079,738	+				-1.3
4,079,738	+				+1.3
4,079,738	+				-0.7
4,079,738	+				-0.0
4,079,738	+				-0.9
4,079,744	+				+0.1
4,079,745	+				+0.3
4,079,752	-				-0.2
4,079,753	-				-2.1
4,079,755	+				+0.1
4,079,763	-				+0.6
4,079,763	-				+1.5
4,079,780	-				+0.1
4,079,787	+		GFF4066	0.10	+1.3
4,079,787	+		GFF4066	0.10	+0.7
4,079,795	-		GFF4066	0.11	-0.4
4,079,795	-		GFF4066	0.11	+0.1
4,079,800	-		GFF4066	0.12	+0.7
4,079,825	+		GFF4066	0.14	+0.0
4,079,834	-		GFF4066	0.15	+0.6
4,079,834	-		GFF4066	0.15	-0.2
4,079,843	+		GFF4066	0.16	+0.0
4,079,905	-		GFF4066	0.22	-0.3
4,079,912	+		GFF4066	0.22	+0.3
4,079,927	+		GFF4066	0.24	+0.4
4,079,927	+		GFF4066	0.24	-1.7
4,079,927	+		GFF4066	0.24	+0.1
4,079,927	+		GFF4066	0.24	-0.4
4,079,927	+		GFF4066	0.24	-1.1
4,079,927	+		GFF4066	0.24	-1.5
4,079,927	+		GFF4066	0.24	-0.5
4,079,927	+		GFF4066	0.24	-1.8
4,079,927	+		GFF4066	0.24	+1.3
4,079,927	+		GFF4066	0.24	-0.5
4,079,927	+		GFF4066	0.24	-0.2
4,079,927	+		GFF4066	0.24	-0.2
4,079,927	+		GFF4066	0.24	+1.1
4,079,927	+		GFF4066	0.24	-1.0
4,079,927	+		GFF4066	0.24	+0.0
4,079,927	+		GFF4066	0.24	+0.8
4,079,927	+		GFF4066	0.24	+0.3
4,079,927	+		GFF4066	0.24	-0.8
4,079,927	+		GFF4066	0.24	+0.4
4,079,935	-		GFF4066	0.24	-2.0
4,079,935	-		GFF4066	0.24	+0.2
4,079,935	-		GFF4066	0.24	-0.1
4,079,935	-		GFF4066	0.24	-1.3
4,079,935	-		GFF4066	0.24	+0.1
4,079,935	-		GFF4066	0.24	-1.7
4,079,935	-		GFF4066	0.24	-3.2
4,079,935	-		GFF4066	0.24	+0.3
4,079,935	-		GFF4066	0.24	-0.6
4,079,935	-		GFF4066	0.24	-0.2
4,079,935	-		GFF4066	0.24	+0.4
4,079,935	-		GFF4066	0.24	-0.1
4,079,935	-		GFF4066	0.24	-0.0
4,079,935	-		GFF4066	0.24	-3.4
4,079,935	-		GFF4066	0.24	-0.2
4,079,935	-		GFF4066	0.24	-0.1
4,079,935	-		GFF4066	0.24	+0.1
4,079,935	-		GFF4066	0.24	-1.4
4,079,939	+		GFF4066	0.25	-0.0
4,079,939	+		GFF4066	0.25	-1.4
4,079,947	-		GFF4066	0.26	-0.6
4,079,947	-		GFF4066	0.26	+1.0
4,079,957	+		GFF4066	0.27	-1.0
4,079,957	+		GFF4066	0.27	+0.5
4,079,965	-		GFF4066	0.27	-0.6
4,079,965	-		GFF4066	0.27	+0.4
4,080,002	+		GFF4066	0.31	-0.7
4,080,015	+		GFF4066	0.32	+0.4
4,080,023	-		GFF4066	0.33	-0.0
4,080,023	-		GFF4066	0.33	-0.8
4,080,023	-		GFF4066	0.33	-0.1
4,080,025	-		GFF4066	0.33	+0.3
4,080,044	+		GFF4066	0.35	-2.2
4,080,044	+		GFF4066	0.35	-0.9
4,080,044	+		GFF4066	0.35	+0.4
4,080,049	-		GFF4066	0.35	-1.4
4,080,051	-		GFF4066	0.36	-1.6
4,080,052	-		GFF4066	0.36	-0.4
4,080,052	-		GFF4066	0.36	-1.5
4,080,061	+		GFF4066	0.36	+0.0
4,080,061	+		GFF4066	0.36	+1.3
4,080,061	+		GFF4066	0.36	-2.5
4,080,069	-		GFF4066	0.37	-0.6
4,080,069	-		GFF4066	0.37	+1.1
4,080,071	+		GFF4066	0.37	-2.2
4,080,071	-		GFF4066	0.37	+0.6
4,080,108	+		GFF4066	0.41	+0.5
4,080,111	-		GFF4066	0.41	+0.6
4,080,116	-		GFF4066	0.42	-0.4
4,080,136	-		GFF4066	0.44	-1.5
4,080,136	-		GFF4066	0.44	+0.4
4,080,141	-		GFF4066	0.44	-0.7
4,080,141	-		GFF4066	0.44	+1.1
4,080,143	+		GFF4066	0.44	+0.7
4,080,154	+		GFF4066	0.45	+0.8
4,080,159	+		GFF4066	0.46	-1.7
4,080,176	-		GFF4066	0.47	+0.3
4,080,184	-		GFF4066	0.48	-1.5
4,080,196	+		GFF4066	0.49	+1.7
4,080,204	-		GFF4066	0.50	-0.8
4,080,247	-		GFF4066	0.54	-0.4
4,080,270	+		GFF4066	0.56	-1.3
4,080,270	+		GFF4066	0.56	+1.0
4,080,316	-		GFF4066	0.61	-0.2
4,080,318	+		GFF4066	0.61	+1.2
4,080,326	-		GFF4066	0.62	+0.1
4,080,326	-		GFF4066	0.62	-2.0
4,080,326	-		GFF4066	0.62	-0.6
4,080,373	+		GFF4066	0.66	-0.1
4,080,376	-		GFF4066	0.66	+0.5
4,080,381	-		GFF4066	0.67	+0.7
4,080,381	-		GFF4066	0.67	-1.0
4,080,389	+		GFF4066	0.68	+0.2
4,080,397	-		GFF4066	0.68	-0.1
4,080,414	+		GFF4066	0.70	-1.4
4,080,414	+		GFF4066	0.70	-1.2
4,080,422	-		GFF4066	0.71	+0.7
4,080,425	+		GFF4066	0.71	-0.9
4,080,428	+		GFF4066	0.71	-0.2
4,080,433	-		GFF4066	0.72	+0.8
4,080,455	+		GFF4066	0.74	-0.7
4,080,458	-		GFF4066	0.74	-2.1
4,080,499	-		GFF4066	0.78	-2.0
4,080,514	-		GFF4066	0.80	+0.6
4,080,518	+		GFF4066	0.80	-0.4
4,080,524	-		GFF4066	0.81	-0.8
4,080,526	+		GFF4066	0.81	-1.9
4,080,526	+		GFF4066	0.81	-1.7
4,080,534	-		GFF4066	0.82	-0.5
4,080,534	-		GFF4066	0.82	-1.1
4,080,534	-		GFF4066	0.82	-0.0
4,080,539	-		GFF4066	0.82	-2.4
4,080,553	-		GFF4066	0.83	-0.0
4,080,572	-		GFF4066	0.85	-1.0
4,080,578	-		GFF4066	0.86	+0.8
4,080,691	+				-1.7
4,080,691	+				-1.2
4,080,694	-				+1.2
4,080,694	-				+0.7
4,080,694	-				+0.1
4,080,703	+				-0.4
4,080,703	+				-0.6
4,080,703	+				-0.6
4,080,703	+				-1.8
4,080,703	+				-0.0
4,080,704	-				-0.1
4,080,711	-				-0.0
4,080,711	-				-1.2
4,080,712	-				+0.0
4,080,721	+				-1.2
4,080,721	+				-1.6
4,080,721	+				+0.0
4,080,721	+				+0.7
4,080,729	-				+0.4
4,080,729	-				+0.3
4,080,729	-				+0.6
4,080,729	-				+0.2
4,080,729	-				+0.3
4,080,729	-				-1.8
4,080,731	+				+0.0
4,080,731	+				-1.7
4,080,731	-				-0.1
4,080,755	+				-0.6
4,080,769	+				-1.2
4,080,777	-				+1.3
4,080,777	-				-0.6
4,080,817	-		GFF4067	0.15	-1.6
4,080,830	+		GFF4067	0.19	-2.1
4,080,867	-		GFF4067	0.32	-0.6
4,080,895	+		GFF4067	0.41	-0.7
4,080,895	+		GFF4067	0.41	-0.6
4,080,895	+		GFF4067	0.41	-0.1
4,080,895	+		GFF4067	0.41	+0.7
4,080,903	-		GFF4067	0.44	-0.7
4,080,903	-		GFF4067	0.44	-0.3
4,080,903	-		GFF4067	0.44	+0.5
4,080,903	-		GFF4067	0.44	+1.5
4,080,908	-		GFF4067	0.45	-0.4
4,080,908	-		GFF4067	0.45	-0.2
4,080,913	-		GFF4067	0.47	-2.2
4,080,919	-		GFF4067	0.49	-0.6
4,080,922	+		GFF4067	0.50	-0.6
4,080,923	+		GFF4067	0.50	-0.2
4,080,942	+		GFF4067	0.56	+0.0
4,080,990	+		GFF4067	0.72	-0.2
4,080,995	+		GFF4067	0.74	+1.5
4,081,010	-		GFF4067	0.79	+0.8
4,081,024	+		GFF4067	0.83	-2.4
4,081,026	+		GFF4067	0.84	+0.4
4,081,032	-		GFF4067	0.86	-1.0
4,081,032	-		GFF4067	0.86	+1.3
4,081,034	-		GFF4067	0.87	-0.0
4,081,077	+				+1.6
4,081,079	+				+0.2
4,081,106	+				+1.4
4,081,106	+				+0.8
4,081,106	+				-0.3
4,081,106	+				-2.0
4,081,106	+				-1.2
4,081,114	-				-1.5
4,081,119	-				-0.7
4,081,142	+				-0.4
4,081,173	-				-0.6
4,081,190	-				+1.6
4,081,192	+				-1.1
4,081,200	-				-0.5
4,081,201	+				-1.7
4,081,209	-				-2.1