Strain Fitness in Sphingobium sp. HT1-2 around GFF3851

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,889,230	-				-0.2
3,889,230	-				-0.9
3,889,236	-				+0.2
3,889,236	-				+0.2
3,889,238	+				-1.2
3,889,243	+				-0.5
3,889,246	-				+1.8
3,889,246	-				-0.1
3,889,255	-				+0.2
3,889,273	+		GFF3850	0.10	-1.0
3,889,273	+		GFF3850	0.10	-0.3
3,889,273	+		GFF3850	0.10	-0.4
3,889,290	+		GFF3850	0.12	+0.5
3,889,291	-		GFF3850	0.12	+1.4
3,889,328	-		GFF3850	0.16	-0.2
3,889,329	+		GFF3850	0.16	-0.5
3,889,342	-		GFF3850	0.17	-0.1
3,889,358	-		GFF3850	0.18	-2.2
3,889,360	+		GFF3850	0.19	+0.6
3,889,360	+		GFF3850	0.19	-1.2
3,889,372	+		GFF3850	0.20	-2.7
3,889,382	+		GFF3850	0.21	-0.6
3,889,441	+		GFF3850	0.26	-0.2
3,889,453	+		GFF3850	0.27	-1.6
3,889,453	+		GFF3850	0.27	-0.2
3,889,453	+		GFF3850	0.27	-2.4
3,889,453	+		GFF3850	0.27	-2.5
3,889,461	-		GFF3850	0.28	+0.0
3,889,475	+		GFF3850	0.30	+0.5
3,889,481	+		GFF3850	0.30	-1.1
3,889,483	-		GFF3850	0.30	+0.6
3,889,483	-		GFF3850	0.30	+0.2
3,889,483	-		GFF3850	0.30	-0.5
3,889,504	-		GFF3850	0.32	+0.3
3,889,511	-		GFF3850	0.33	-0.1
3,889,521	-		GFF3850	0.34	-1.0
3,889,521	-		GFF3850	0.34	-0.1
3,889,550	+		GFF3850	0.37	-2.0
3,889,550	+		GFF3850	0.37	+0.0
3,889,612	-		GFF3850	0.43	-0.4
3,889,628	+		GFF3850	0.44	-1.2
3,889,628	+		GFF3850	0.44	-0.8
3,889,636	-		GFF3850	0.45	-0.6
3,889,636	-		GFF3850	0.45	-0.5
3,889,636	-		GFF3850	0.45	+0.3
3,889,636	-		GFF3850	0.45	+0.8
3,889,636	-		GFF3850	0.45	-0.2
3,889,638	+		GFF3850	0.45	-0.8
3,889,638	+		GFF3850	0.45	-0.5
3,889,638	+		GFF3850	0.45	-1.6
3,889,638	+		GFF3850	0.45	+0.0
3,889,643	+		GFF3850	0.46	-1.7
3,889,643	+		GFF3850	0.46	+0.1
3,889,643	+		GFF3850	0.46	+0.0
3,889,643	+		GFF3850	0.46	+0.6
3,889,643	+		GFF3850	0.46	-0.9
3,889,646	-		GFF3850	0.46	-1.5
3,889,648	+		GFF3850	0.46	-1.9
3,889,648	+		GFF3850	0.46	+0.1
3,889,650	+		GFF3850	0.46	-1.2
3,889,651	-		GFF3850	0.46	-0.6
3,889,651	-		GFF3850	0.46	+0.5
3,889,651	-		GFF3850	0.46	-2.1
3,889,651	-		GFF3850	0.46	+0.6
3,889,655	+		GFF3850	0.47	-0.3
3,889,656	-		GFF3850	0.47	-0.1
3,889,670	+		GFF3850	0.48	+1.2
3,889,670	+		GFF3850	0.48	+0.5
3,889,706	+		GFF3850	0.52	-0.0
3,889,717	+		GFF3850	0.53	-0.3
3,889,717	+		GFF3850	0.53	-1.5
3,889,717	+		GFF3850	0.53	-3.0
3,889,717	+		GFF3850	0.53	-2.4
3,889,725	-		GFF3850	0.54	-0.2
3,889,725	-		GFF3850	0.54	+0.9
3,889,742	+		GFF3850	0.55	-1.7
3,889,747	+		GFF3850	0.56	-0.4
3,889,750	-		GFF3850	0.56	+0.1
3,889,755	-		GFF3850	0.56	-0.4
3,889,764	-		GFF3850	0.57	+0.5
3,889,776	+		GFF3850	0.58	-1.9
3,889,776	+		GFF3850	0.58	-1.5
3,889,781	+		GFF3850	0.59	-0.9
3,889,784	-		GFF3850	0.59	-0.7
3,889,789	-		GFF3850	0.60	+0.1
3,889,789	-		GFF3850	0.60	-0.3
3,889,794	-		GFF3850	0.60	+0.6
3,889,794	-		GFF3850	0.60	+1.6
3,889,801	+		GFF3850	0.61	-0.6
3,889,801	+		GFF3850	0.61	-0.1
3,889,816	+		GFF3850	0.62	-0.1
3,889,818	+		GFF3850	0.62	+0.2
3,889,874	+		GFF3850	0.68	-0.3
3,889,882	-		GFF3850	0.69	-0.2
3,889,894	-		GFF3850	0.70	-0.4
3,889,894	-		GFF3850	0.70	+0.6
3,889,911	+		GFF3850	0.71	-0.9
3,889,911	+		GFF3850	0.71	+0.3
3,889,916	+		GFF3850	0.72	-1.8
3,889,919	-		GFF3850	0.72	+0.1
3,889,937	+		GFF3850	0.74	+0.4
3,889,943	+		GFF3850	0.74	-0.5
3,889,943	+		GFF3850	0.74	-1.1
3,889,943	+		GFF3850	0.74	-1.0
3,889,946	-		GFF3850	0.75	-1.5
3,889,951	-		GFF3850	0.75	-2.6
3,889,951	-		GFF3850	0.75	-0.6
3,889,965	+		GFF3850	0.77	+0.4
3,889,996	+		GFF3850	0.80	-0.7
3,890,004	-		GFF3850	0.80	-0.1
3,890,009	+		GFF3850	0.81	+0.8
3,890,009	+		GFF3850	0.81	+0.5
3,890,009	+		GFF3850	0.81	+0.1
3,890,009	+		GFF3850	0.81	+1.5
3,890,009	+		GFF3850	0.81	-1.9
3,890,009	+		GFF3850	0.81	-0.4
3,890,009	+		GFF3850	0.81	-0.9
3,890,014	+		GFF3850	0.81	-1.0
3,890,014	+		GFF3850	0.81	-1.8
3,890,017	-		GFF3850	0.82	-0.6
3,890,017	-		GFF3850	0.82	-0.5
3,890,017	-		GFF3850	0.82	-0.7
3,890,017	-		GFF3850	0.82	-1.0
3,890,017	-		GFF3850	0.82	+0.4
3,890,017	-		GFF3850	0.82	-1.9
3,890,017	-		GFF3850	0.82	-0.7
3,890,017	-		GFF3850	0.82	-1.2
3,890,017	-		GFF3850	0.82	+0.3
3,890,017	-		GFF3850	0.82	-1.9
3,890,017	-		GFF3850	0.82	+0.3
3,890,017	-		GFF3850	0.82	+1.2
3,890,022	-		GFF3850	0.82	-1.9
3,890,022	-		GFF3850	0.82	-0.5
3,890,022	-		GFF3850	0.82	-0.3
3,890,022	-		GFF3850	0.82	-0.1
3,890,055	+		GFF3850	0.85	-0.0
3,890,068	-		GFF3850	0.86	-0.5
3,890,104	+		GFF3850	0.90	-0.8
3,890,118	+				+0.6
3,890,118	+				-1.2
3,890,118	+				+0.7
3,890,123	+				+1.8
3,890,123	+				-0.3
3,890,123	+				-0.6
3,890,123	+				-0.5
3,890,123	+				-2.5
3,890,126	-				-0.6
3,890,126	-				+0.8
3,890,126	-				-1.7
3,890,131	-				-0.6
3,890,131	-				-1.1
3,890,131	-				-2.2
3,890,131	-				-1.2
3,890,142	+				-2.5
3,890,200	-				-1.3
3,890,200	-				-2.0
3,890,204	+				-1.6
3,890,204	+				-2.2
3,890,211	+				-0.4
3,890,222	+				-0.2
3,890,226	+				-0.7
3,890,226	+				+0.0
3,890,232	+				+0.8
3,890,240	-				-0.9
3,890,240	-				+1.4
3,890,264	-				+1.3
3,890,264	-				-1.0
3,890,265	-				-1.4
3,890,271	-				+0.9
3,890,281	+				-1.2
3,890,291	+				+0.4
3,890,291	+				-0.3
3,890,294	-				+0.5
3,890,298	+				-0.0
3,890,299	-				-0.3
3,890,310	+				-1.5
3,890,316	+				-1.7
3,890,324	-				-1.8
3,890,334	+				-0.5
3,890,334	+				-0.3
3,890,342	-				+0.1
3,890,350	-		GFF3851	0.10	-1.7
3,890,354	-		GFF3851	0.11	+0.9
3,890,358	-		GFF3851	0.11	-2.2
3,890,358	-		GFF3851	0.11	-2.1
3,890,370	-		GFF3851	0.12	-1.6
3,890,372	+		GFF3851	0.12	+0.0
3,890,424	+		GFF3851	0.16	+1.1
3,890,451	+		GFF3851	0.18	-0.3
3,890,459	-		GFF3851	0.19	+0.1
3,890,459	-		GFF3851	0.19	-0.0
3,890,459	-		GFF3851	0.19	+0.2
3,890,496	+		GFF3851	0.22	+0.4
3,890,503	-		GFF3851	0.22	-0.4
3,890,504	-		GFF3851	0.22	+1.0
3,890,504	-		GFF3851	0.22	-0.3
3,890,511	+		GFF3851	0.23	-2.2
3,890,511	-		GFF3851	0.23	+0.2
3,890,511	-		GFF3851	0.23	+0.8
3,890,511	-		GFF3851	0.23	-0.7
3,890,513	+		GFF3851	0.23	+0.3
3,890,514	-		GFF3851	0.23	-0.4
3,890,514	-		GFF3851	0.23	-1.0
3,890,517	+		GFF3851	0.23	-1.7
3,890,528	+		GFF3851	0.24	-1.1
3,890,528	+		GFF3851	0.24	+0.6
3,890,536	-		GFF3851	0.25	-0.7
3,890,563	-		GFF3851	0.27	-1.2
3,890,563	-		GFF3851	0.27	-0.5
3,890,578	-		GFF3851	0.28	-0.2
3,890,583	+		GFF3851	0.28	-0.2
3,890,584	+		GFF3851	0.28	+0.3
3,890,584	+		GFF3851	0.28	+0.8
3,890,593	-		GFF3851	0.29	+0.6
3,890,607	-		GFF3851	0.30	-0.8
3,890,610	-		GFF3851	0.30	+1.0
3,890,645	-		GFF3851	0.33	-0.4
3,890,652	+		GFF3851	0.34	-2.4
3,890,665	-		GFF3851	0.35	-0.0
3,890,701	-		GFF3851	0.37	-2.4
3,890,710	+		GFF3851	0.38	-0.4
3,890,710	-		GFF3851	0.38	-0.5
3,890,753	-		GFF3851	0.41	-1.5
3,890,770	+		GFF3851	0.43	+0.7
3,890,770	+		GFF3851	0.43	+0.9
3,890,770	+		GFF3851	0.43	-0.4
3,890,770	+		GFF3851	0.43	+0.2
3,890,770	+		GFF3851	0.43	-0.9
3,890,770	+		GFF3851	0.43	-0.2
3,890,770	+		GFF3851	0.43	+0.3
3,890,770	+		GFF3851	0.43	-0.6
3,890,770	+		GFF3851	0.43	-1.3
3,890,770	+		GFF3851	0.43	-1.5
3,890,770	+		GFF3851	0.43	-0.9
3,890,770	+		GFF3851	0.43	+0.0
3,890,770	+		GFF3851	0.43	+0.4
3,890,770	+		GFF3851	0.43	+0.7
3,890,770	+		GFF3851	0.43	-0.2
3,890,770	+		GFF3851	0.43	+0.6
3,890,770	+		GFF3851	0.43	-1.0
3,890,770	+		GFF3851	0.43	+1.1
3,890,770	+		GFF3851	0.43	-0.9
3,890,770	+		GFF3851	0.43	-0.2
3,890,775	+		GFF3851	0.43	-0.8
3,890,778	-		GFF3851	0.43	+1.0
3,890,778	-		GFF3851	0.43	-2.2
3,890,778	-		GFF3851	0.43	+0.6
3,890,778	-		GFF3851	0.43	-0.9
3,890,778	-		GFF3851	0.43	-0.0
3,890,778	-		GFF3851	0.43	+0.2
3,890,778	-		GFF3851	0.43	+0.2
3,890,778	-		GFF3851	0.43	-0.9
3,890,778	-		GFF3851	0.43	+0.8
3,890,787	+		GFF3851	0.44	-0.4
3,890,797	+		GFF3851	0.45	+1.6
3,890,800	-		GFF3851	0.45	+0.6
3,890,820	+		GFF3851	0.47	-1.8
3,890,820	+		GFF3851	0.47	+0.6
3,890,820	+		GFF3851	0.47	-1.1
3,890,820	+		GFF3851	0.47	-1.1
3,890,828	-		GFF3851	0.47	-1.0
3,890,828	-		GFF3851	0.47	+0.4
3,890,833	-		GFF3851	0.48	-3.1
3,890,840	+		GFF3851	0.48	+0.4
3,890,859	+		GFF3851	0.50	-1.7
3,890,867	-		GFF3851	0.50	-0.9
3,890,867	-		GFF3851	0.50	-2.5
3,890,889	+		GFF3851	0.52	-1.7
3,890,889	+		GFF3851	0.52	-0.1
3,890,889	+		GFF3851	0.52	-0.9
3,890,897	-		GFF3851	0.52	+1.3
3,890,908	-		GFF3851	0.53	-1.7
3,890,914	-		GFF3851	0.54	-2.4
3,890,924	+		GFF3851	0.55	-0.7
3,890,932	-		GFF3851	0.55	+0.5
3,890,941	+		GFF3851	0.56	-0.1
3,890,941	+		GFF3851	0.56	+0.8
3,890,963	-		GFF3851	0.58	-1.1
3,890,963	-		GFF3851	0.58	-0.1
3,890,990	+		GFF3851	0.60	+1.4
3,890,990	+		GFF3851	0.60	-1.7
3,890,996	+		GFF3851	0.60	+0.8
3,890,999	-		GFF3851	0.60	+0.0
3,891,004	-		GFF3851	0.61	+0.4
3,891,006	+		GFF3851	0.61	+0.7
3,891,013	-		GFF3851	0.61	+0.4
3,891,022	+		GFF3851	0.62	-0.9
3,891,053	+		GFF3851	0.64	+0.8
3,891,055	+		GFF3851	0.65	+0.5
3,891,061	-		GFF3851	0.65	+0.6
3,891,068	-		GFF3851	0.66	-0.2
3,891,097	+		GFF3851	0.68	-0.5
3,891,105	-		GFF3851	0.68	-0.0
3,891,120	+		GFF3851	0.70	-0.7
3,891,138	-		GFF3851	0.71	+0.6
3,891,143	+		GFF3851	0.71	+1.1
3,891,151	-		GFF3851	0.72	+0.0
3,891,159	-		GFF3851	0.73	-1.1
3,891,163	-		GFF3851	0.73	-1.2
3,891,165	+		GFF3851	0.73	-1.2
3,891,186	+		GFF3851	0.75	-0.3
3,891,201	+		GFF3851	0.76	-0.2
3,891,201	+		GFF3851	0.76	-0.7
3,891,201	+		GFF3851	0.76	+0.8
3,891,201	+		GFF3851	0.76	+1.6
3,891,201	+		GFF3851	0.76	-0.4
3,891,203	+		GFF3851	0.76	-0.4
3,891,203	+		GFF3851	0.76	-0.2
3,891,203	+		GFF3851	0.76	-0.2
3,891,203	+		GFF3851	0.76	+1.7
3,891,203	+		GFF3851	0.76	-0.4
3,891,203	+		GFF3851	0.76	+0.4
3,891,209	-		GFF3851	0.76	-1.5
3,891,209	-		GFF3851	0.76	+0.1
3,891,209	-		GFF3851	0.76	+1.3
3,891,209	-		GFF3851	0.76	-2.3
3,891,209	-		GFF3851	0.76	-0.1
3,891,209	-		GFF3851	0.76	+0.3
3,891,209	-		GFF3851	0.76	-2.3
3,891,211	-		GFF3851	0.77	+1.1
3,891,211	-		GFF3851	0.77	-0.8
3,891,211	-		GFF3851	0.77	+0.4
3,891,213	+		GFF3851	0.77	+0.6
3,891,214	-		GFF3851	0.77	-1.4
3,891,219	-		GFF3851	0.77	-2.3
3,891,222	+		GFF3851	0.77	-2.2
3,891,247	+		GFF3851	0.79	+0.7
3,891,247	+		GFF3851	0.79	-1.0
3,891,255	-		GFF3851	0.80	+0.3
3,891,265	-		GFF3851	0.81	+0.4
3,891,281	+		GFF3851	0.82	-0.4
3,891,281	+		GFF3851	0.82	+1.5
3,891,281	+		GFF3851	0.82	-0.4
3,891,281	+		GFF3851	0.82	-0.2
3,891,291	+		GFF3851	0.83	+0.7
3,891,294	-		GFF3851	0.83	-0.5
3,891,306	-		GFF3851	0.84	-0.5
3,891,314	-		GFF3851	0.84	+0.5
3,891,326	+		GFF3851	0.85	-2.9
3,891,334	-		GFF3851	0.86	-0.8
3,891,380	+		GFF3851	0.90	+0.3
3,891,387	+				-2.0
3,891,400	-				+1.3
3,891,411	-				-1.3
3,891,413	+				-0.1
3,891,429	-				-0.5
3,891,440	+				-2.3
3,891,457	+				-1.2
3,891,457	+				+0.5
3,891,457	+				-0.6
3,891,457	+				-1.3
3,891,457	+				-0.6
3,891,457	+				-0.4
3,891,457	+				-0.4
3,891,457	+				-2.2
3,891,465	-				-0.4
3,891,465	-				+0.0
3,891,465	-				+0.3
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3,891,465	-				-0.6
3,891,465	-				-1.0
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3,891,485	-				-2.5
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3,891,495	+				+0.9
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3,891,503	+				+0.5
3,891,503	+				+0.3
3,891,503	+				-1.2
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3,891,503	+				-1.5
3,891,510	+				-1.5
3,891,511	-				+1.9
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3,891,511	-				+0.2
3,891,511	-				-1.1
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3,891,531	-				-1.0
3,891,533	+				+0.8
3,891,537	+				+0.4
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3,891,548	+				-2.4
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3,891,556	-				-2.7
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3,891,575	-				-0.0
3,891,581	+				-0.0
3,891,593	-				+2.0
3,891,610	-				-0.9
3,891,626	+				+0.1
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3,891,638	+				-0.2
3,891,641	+				-0.5
3,891,641	+				-0.7
3,891,641	+				-0.8
3,891,649	-				-1.1
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3,891,649	-				+0.3
3,891,656	-				+0.8
3,891,659	-				-0.1
3,891,664	+				-0.1
3,891,665	-				-2.2
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3,891,698	+				-1.0
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3,892,392	+		GFF3852	0.56	-2.9
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3,892,407	+		GFF3852	0.57	-1.0
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3,892,500	+		GFF3852	0.64	-1.6