Strain Fitness in Sphingobium sp. HT1-2 around GFF3819

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,859,366	-		GFF3817	0.41	-1.6
3,859,368	-		GFF3817	0.41	+1.3
3,859,378	+		GFF3817	0.42	-0.6
3,859,443	-		GFF3817	0.49	-1.8
3,859,443	-		GFF3817	0.49	-0.5
3,859,448	+		GFF3817	0.49	+0.7
3,859,456	-		GFF3817	0.50	-2.4
3,859,456	-		GFF3817	0.50	-0.8
3,859,456	-		GFF3817	0.50	+1.1
3,859,456	-		GFF3817	0.50	-0.3
3,859,483	-		GFF3817	0.53	+0.1
3,859,520	-		GFF3817	0.56	-0.3
3,859,552	+		GFF3817	0.60	+0.4
3,859,552	+		GFF3817	0.60	+0.7
3,859,552	+		GFF3817	0.60	-0.3
3,859,566	+		GFF3817	0.61	-1.3
3,859,567	+		GFF3817	0.61	-0.5
3,859,575	+		GFF3817	0.62	-0.8
3,859,575	+		GFF3817	0.62	-0.2
3,859,584	+		GFF3817	0.63	-2.8
3,859,590	-		GFF3817	0.63	-0.6
3,859,646	+		GFF3817	0.69	+0.8
3,859,646	+		GFF3817	0.69	-0.1
3,859,656	-		GFF3817	0.70	+1.2
3,859,672	+		GFF3817	0.72	-1.3
3,859,680	-		GFF3817	0.72	-0.8
3,859,680	-		GFF3817	0.72	+1.2
3,859,680	-		GFF3817	0.72	-0.6
3,859,682	+		GFF3817	0.73	+1.1
3,859,709	+		GFF3817	0.75	+0.3
3,859,709	+		GFF3817	0.75	-0.2
3,859,709	+		GFF3817	0.75	-0.7
3,859,713	+		GFF3817	0.76	-1.1
3,859,717	-		GFF3817	0.76	-1.5
3,859,755	-		GFF3817	0.80	-1.3
3,859,777	+		GFF3817	0.82	-0.3
3,859,784	+		GFF3817	0.83	+1.3
3,859,785	-		GFF3817	0.83	-1.3
3,859,786	-		GFF3817	0.83	+0.6
3,859,792	-		GFF3817	0.84	-0.3
3,859,797	+		GFF3817	0.84	+1.0
3,859,805	-		GFF3817	0.85	-0.6
3,859,829	+		GFF3817	0.87	-1.3
3,859,829	+		GFF3817	0.87	-1.6
3,859,829	+		GFF3817	0.87	-1.8
3,859,829	+		GFF3817	0.87	+1.5
3,859,837	-		GFF3817	0.88	+0.7
3,859,861	+				+0.2
3,859,861	+				+1.1
3,859,864	-				-0.0
3,859,869	-				-0.0
3,859,869	-				+0.6
3,859,872	+				-1.1
3,859,880	-				+0.7
3,859,968	-				-0.1
3,859,990	+				+1.5
3,859,990	+				-0.5
3,860,032	+				+0.8
3,860,034	+				-0.2
3,860,041	+				-0.3
3,860,042	-				+1.2
3,860,091	+				-1.1
3,860,091	+				-1.2
3,860,109	+				-2.3
3,860,142	+		GFF3818	0.18	-2.0
3,860,143	-		GFF3818	0.18	-2.3
3,860,145	+		GFF3818	0.19	-2.6
3,860,169	+		GFF3818	0.27	+1.0
3,860,194	-		GFF3818	0.37	-1.2
3,860,237	-		GFF3818	0.52	-3.0
3,860,248	+		GFF3818	0.56	-1.5
3,860,283	+		GFF3818	0.69	-1.2
3,860,283	+		GFF3818	0.69	-1.5
3,860,283	+		GFF3818	0.69	-1.5
3,860,283	+		GFF3818	0.69	-1.9
3,860,291	-		GFF3818	0.72	+0.1
3,860,297	-		GFF3818	0.74	-1.6
3,860,313	+		GFF3818	0.80	-2.6
3,860,313	+		GFF3818	0.80	-0.2
3,860,313	+		GFF3818	0.80	-2.3
3,860,315	+		GFF3818	0.81	-2.6
3,860,315	-		GFF3818	0.81	-2.1
3,860,321	-		GFF3818	0.83	-1.8
3,860,321	-		GFF3818	0.83	-1.8
3,860,323	-		GFF3818	0.84	-2.0
3,860,337	+		GFF3818	0.89	-1.8
3,860,370	+				-1.3
3,860,383	-				-1.5
3,860,437	-		GFF3819	0.18	-1.6
3,860,437	-		GFF3819	0.18	-1.3
3,860,481	+		GFF3819	0.29	-3.3
3,860,503	+		GFF3819	0.35	-1.5
3,860,523	+		GFF3819	0.40	-2.5
3,860,523	+		GFF3819	0.40	-1.8
3,860,531	-		GFF3819	0.41	-1.2
3,860,537	+		GFF3819	0.43	-2.0
3,860,544	+		GFF3819	0.45	-2.1
3,860,545	+		GFF3819	0.45	-1.0
3,860,546	+		GFF3819	0.45	-2.1
3,860,567	-		GFF3819	0.50	-0.2
3,860,569	+		GFF3819	0.51	-1.2
3,860,581	+		GFF3819	0.54	+0.7
3,860,609	+		GFF3819	0.61	-0.2
3,860,738	+				-1.3
3,860,743	+				-1.8
3,860,745	-				+0.4
3,860,818	-				-0.8
3,860,823	-				-1.8
3,860,825	+				-2.1
3,860,825	+				+0.5
3,860,825	+				+0.0
3,860,825	+				-2.2
3,860,825	+				-2.2
3,860,825	+				-0.8
3,860,825	+				-1.3
3,860,825	+				-2.0
3,860,825	+				-0.8
3,860,825	+				-1.3
3,860,825	+				-0.5
3,860,825	+				+0.0
3,860,825	+				-0.7
3,860,833	+				+0.3
3,860,833	-				-0.6
3,860,833	-				+1.0
3,860,833	-				-1.9
3,860,833	-				-0.3
3,860,833	-				+0.2
3,860,833	-				+0.1
3,860,833	-				-1.0
3,860,833	-				-0.8
3,860,833	-				+1.2
3,860,833	-				+0.5
3,860,833	-				-0.6
3,860,833	-				+0.5
3,860,833	-				-0.1
3,860,835	+				+1.1
3,860,835	+				+0.5
3,860,835	+				-1.1
3,860,835	+				-0.3
3,860,835	+				+1.4
3,860,835	+				-1.8
3,860,835	+				-2.1
3,860,835	+				-1.7
3,860,835	+				-0.4
3,860,835	+				-0.7
3,860,835	+				-1.3
3,860,835	+				-0.2
3,860,843	-				-0.5
3,860,843	-				-1.2
3,860,843	-				+0.7
3,860,843	-				-0.8
3,860,843	-				-2.5
3,860,843	-				-1.7
3,860,843	-				-0.8
3,860,843	-				+1.1
3,860,843	-				+0.0
3,860,843	-				-0.8
3,860,843	-				-2.2
3,860,843	-				-0.1
3,860,843	-				-1.2
3,860,843	-				-1.2
3,860,843	-				-0.2
3,860,843	-				-0.4
3,860,843	-				-2.0
3,860,870	-				-0.8
3,860,933	-		GFF3820	0.15	+0.9
3,860,952	+		GFF3820	0.17	-1.1
3,860,952	+		GFF3820	0.17	+0.1
3,860,960	-		GFF3820	0.18	-0.6
3,860,965	+		GFF3820	0.19	-1.9
3,860,965	+		GFF3820	0.19	-0.5
3,860,992	-		GFF3820	0.22	-2.0
3,860,997	-		GFF3820	0.22	-1.1
3,861,007	+		GFF3820	0.23	-0.3
3,861,007	+		GFF3820	0.23	+0.0
3,861,007	+		GFF3820	0.23	+1.6
3,861,015	-		GFF3820	0.24	+0.1
3,861,015	-		GFF3820	0.24	+0.4
3,861,015	-		GFF3820	0.24	-1.3
3,861,017	-		GFF3820	0.24	+0.7
3,861,019	+		GFF3820	0.24	-0.5
3,861,019	+		GFF3820	0.24	+1.4
3,861,027	-		GFF3820	0.25	-1.4
3,861,030	+		GFF3820	0.26	-2.7
3,861,038	+		GFF3820	0.26	-0.1
3,861,046	-		GFF3820	0.27	+0.8
3,861,062	+		GFF3820	0.29	-1.7
3,861,065	-		GFF3820	0.29	-0.2
3,861,070	-		GFF3820	0.30	+0.2
3,861,092	-		GFF3820	0.32	-2.7
3,861,094	+		GFF3820	0.32	+0.6
3,861,102	-		GFF3820	0.33	-0.9
3,861,124	+		GFF3820	0.36	+0.2
3,861,124	+		GFF3820	0.36	-1.7
3,861,124	+		GFF3820	0.36	-0.9
3,861,128	-		GFF3820	0.36	-1.0
3,861,132	-		GFF3820	0.36	-0.7
3,861,132	-		GFF3820	0.36	+0.2
3,861,150	+		GFF3820	0.38	-1.1
3,861,163	-		GFF3820	0.40	-2.5
3,861,168	-		GFF3820	0.40	-0.8
3,861,185	+		GFF3820	0.42	-2.4
3,861,190	+		GFF3820	0.43	-0.2
3,861,192	+		GFF3820	0.43	-0.6
3,861,201	+		GFF3820	0.44	+0.9
3,861,201	+		GFF3820	0.44	+0.0
3,861,201	+		GFF3820	0.44	-1.7
3,861,201	+		GFF3820	0.44	+0.8
3,861,209	-		GFF3820	0.45	-0.5
3,861,209	-		GFF3820	0.45	-0.7
3,861,209	-		GFF3820	0.45	-1.6
3,861,209	-		GFF3820	0.45	-1.0
3,861,209	-		GFF3820	0.45	-1.5
3,861,211	+		GFF3820	0.45	+0.8
3,861,231	+		GFF3820	0.47	+0.8
3,861,262	-		GFF3820	0.50	+0.2
3,861,275	+		GFF3820	0.52	+0.2
3,861,275	+		GFF3820	0.52	-1.4
3,861,275	+		GFF3820	0.52	-2.1
3,861,275	+		GFF3820	0.52	-0.3
3,861,275	+		GFF3820	0.52	+0.2
3,861,275	+		GFF3820	0.52	-0.5
3,861,283	+		GFF3820	0.53	+1.1
3,861,283	-		GFF3820	0.53	-0.3
3,861,299	-		GFF3820	0.54	-0.9
3,861,324	+		GFF3820	0.57	-1.3
3,861,334	-		GFF3820	0.58	+0.9
3,861,385	-		GFF3820	0.63	+0.1
3,861,398	-		GFF3820	0.65	-0.6
3,861,405	-		GFF3820	0.65	+1.0
3,861,435	+		GFF3820	0.69	-0.5
3,861,456	+		GFF3820	0.71	-0.6
3,861,464	-		GFF3820	0.72	+0.5
3,861,475	+		GFF3820	0.73	-0.0
3,861,475	+		GFF3820	0.73	-1.3
3,861,483	-		GFF3820	0.74	-1.1
3,861,498	-		GFF3820	0.75	-0.3
3,861,568	+		GFF3820	0.83	-1.7
3,861,569	-		GFF3820	0.83	-1.4
3,861,581	-		GFF3820	0.84	+1.0
3,861,586	-		GFF3820	0.85	-1.5
3,861,586	-		GFF3820	0.85	-0.1
3,861,588	-		GFF3820	0.85	-1.0
3,861,608	-		GFF3820	0.87	+0.7
3,861,609	-		GFF3820	0.87	+0.7
3,861,621	+		GFF3820	0.88	+0.4
3,861,629	-		GFF3820	0.89	-0.5
3,861,629	-		GFF3820	0.89	-0.1
3,861,648	-				-0.3
3,861,660	-				+0.7
3,861,674	-				-1.9
3,861,676	+				-1.2
3,861,684	-				-2.5
3,861,684	-				-1.0
3,861,684	-				-0.3
3,861,694	-				-1.4
3,861,694	-				-0.4
3,861,694	-				-0.5
3,861,694	-				+0.5
3,861,704	-				-2.8
3,861,705	+				-2.1
3,861,705	+				+1.7
3,861,705	+				-1.6
3,861,706	+				-0.9
3,861,709	-				-1.8
3,861,713	-				-0.5
3,861,713	-				-1.0
3,861,713	-				-1.0
3,861,724	+				-0.5
3,861,729	+				+0.0
3,861,732	-				+0.6
3,861,734	+				-0.3
3,861,737	-				+0.1
3,861,737	-				+0.1
3,861,737	-				-0.8