Strain Fitness in Sphingobium sp. HT1-2 around GFF2967

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,022,787	+		GFF2964	0.62	-0.9
3,022,787	+		GFF2964	0.62	-1.0
3,022,787	+		GFF2964	0.62	-1.5
3,022,787	+		GFF2964	0.62	-2.1
3,022,787	+		GFF2964	0.62	+1.6
3,022,787	+		GFF2964	0.62	+0.7
3,022,787	+		GFF2964	0.62	+0.2
3,022,790	-		GFF2964	0.62	-1.3
3,022,795	-		GFF2964	0.63	+0.7
3,022,795	-		GFF2964	0.63	+0.0
3,022,795	-		GFF2964	0.63	-1.0
3,022,795	-		GFF2964	0.63	+0.9
3,022,795	-		GFF2964	0.63	-0.9
3,022,818	+		GFF2964	0.66	-0.6
3,022,818	+		GFF2964	0.66	-1.3
3,022,818	+		GFF2964	0.66	+1.7
3,022,818	-		GFF2964	0.66	-0.8
3,022,834	+		GFF2964	0.69	-0.6
3,022,834	+		GFF2964	0.69	-0.1
3,022,834	+		GFF2964	0.69	-1.5
3,022,839	+		GFF2964	0.70	+1.5
3,022,842	-		GFF2964	0.70	+0.8
3,022,842	-		GFF2964	0.70	+0.7
3,022,869	+		GFF2964	0.74	+0.4
3,022,875	+		GFF2964	0.75	+1.0
3,022,895	+		GFF2964	0.78	-1.4
3,022,895	+		GFF2964	0.78	+1.5
3,022,895	+		GFF2964	0.78	-0.2
3,022,897	-		GFF2964	0.78	-0.3
3,022,903	-		GFF2964	0.79	+1.6
3,022,903	-		GFF2964	0.79	-0.3
3,022,903	-		GFF2964	0.79	-0.3
3,022,934	+		GFF2964	0.84	-2.4
3,022,936	-		GFF2964	0.84	-1.1
3,022,937	+		GFF2964	0.84	-1.6
3,022,942	-		GFF2964	0.85	-1.3
3,022,942	-		GFF2964	0.85	+0.4
3,022,957	+		GFF2964	0.87	-0.5
3,022,970	-		GFF2964	0.89	-0.0
3,022,970	-		GFF2964	0.89	-0.6
3,022,978	+				-1.6
3,022,986	-				+0.2
3,022,993	+				-0.0
3,022,993	+				-0.0
3,023,001	-				-0.0
3,023,003	+				-1.0
3,023,003	+				-0.4
3,023,003	+				-1.4
3,023,003	+				-1.8
3,023,003	+				-1.6
3,023,003	+				+0.1
3,023,011	-				-1.9
3,023,011	-				+1.4
3,023,011	-				-1.3
3,023,012	+				-1.3
3,023,016	-				-0.2
3,023,025	+				-0.3
3,023,068	-				-0.7
3,023,108	+		GFF2965	0.15	-0.0
3,023,111	-		GFF2965	0.15	-0.3
3,023,118	+		GFF2965	0.17	-0.1
3,023,118	+		GFF2965	0.17	+0.8
3,023,118	+		GFF2965	0.17	+1.3
3,023,126	-		GFF2965	0.19	+1.1
3,023,126	-		GFF2965	0.19	+1.3
3,023,151	+		GFF2965	0.24	+0.1
3,023,166	+		GFF2965	0.27	+1.3
3,023,167	-		GFF2965	0.27	-1.2
3,023,188	+		GFF2965	0.32	+1.2
3,023,193	+		GFF2965	0.33	+0.3
3,023,193	+		GFF2965	0.33	-0.7
3,023,193	+		GFF2965	0.33	+0.5
3,023,193	+		GFF2965	0.33	+0.6
3,023,193	+		GFF2965	0.33	-0.1
3,023,196	-		GFF2965	0.34	+0.8
3,023,196	-		GFF2965	0.34	-0.4
3,023,196	-		GFF2965	0.34	-0.7
3,023,198	+		GFF2965	0.34	-0.3
3,023,198	+		GFF2965	0.34	-1.3
3,023,198	+		GFF2965	0.34	+0.6
3,023,201	-		GFF2965	0.35	-2.0
3,023,206	-		GFF2965	0.36	-0.7
3,023,215	-		GFF2965	0.38	+0.1
3,023,228	-		GFF2965	0.40	-0.2
3,023,263	-		GFF2965	0.48	-1.4
3,023,290	-		GFF2965	0.54	-0.9
3,023,290	-		GFF2965	0.54	-0.2
3,023,294	+		GFF2965	0.54	-0.3
3,023,294	+		GFF2965	0.54	-0.1
3,023,310	+		GFF2965	0.58	-0.9
3,023,320	+		GFF2965	0.60	-3.2
3,023,342	+		GFF2965	0.65	-1.5
3,023,342	+		GFF2965	0.65	+0.1
3,023,349	+		GFF2965	0.66	-0.3
3,023,349	+		GFF2965	0.66	-1.1
3,023,350	-		GFF2965	0.66	+0.7
3,023,350	-		GFF2965	0.66	-1.9
3,023,350	-		GFF2965	0.66	-1.5
3,023,350	-		GFF2965	0.66	-0.2
3,023,350	-		GFF2965	0.66	+0.7
3,023,352	+		GFF2965	0.67	-0.5
3,023,359	+		GFF2965	0.68	+0.3
3,023,367	-		GFF2965	0.70	-2.0
3,023,367	-		GFF2965	0.70	-0.2
3,023,367	-		GFF2965	0.70	-0.0
3,023,367	-		GFF2965	0.70	-1.0
3,023,377	+		GFF2965	0.72	+0.2
3,023,380	-		GFF2965	0.73	+0.4
3,023,385	+		GFF2965	0.74	+0.9
3,023,385	+		GFF2965	0.74	+0.3
3,023,387	+		GFF2965	0.74	-0.5
3,023,393	-		GFF2965	0.76	+0.2
3,023,395	-		GFF2965	0.76	-0.8
3,023,397	+		GFF2965	0.76	-1.4
3,023,400	-		GFF2965	0.77	+0.5
3,023,400	-		GFF2965	0.77	-1.9
3,023,414	+		GFF2965	0.80	+1.8
3,023,437	-		GFF2965	0.85	-0.9
3,023,458	-		GFF2965	0.90	+0.4
3,023,463	+				-1.3
3,023,495	+				-0.2
3,023,495	+				+1.3
3,023,495	+				-0.5
3,023,495	+				+0.3
3,023,515	+				-0.5
3,023,518	-				+0.5
3,023,531	-				-0.8
3,023,585	-		GFF2966	0.29	+0.2
3,023,586	+		GFF2966	0.29	-0.6
3,023,616	+		GFF2966	0.40	+0.2
3,023,621	+		GFF2966	0.41	-1.2
3,023,663	+		GFF2966	0.56	-1.8
3,023,704	+		GFF2966	0.71	-1.1
3,023,712	-		GFF2966	0.73	+0.3
3,023,712	-		GFF2966	0.73	-1.8
3,023,714	+		GFF2966	0.74	-1.3
3,023,732	+		GFF2966	0.80	+0.9
3,023,732	+		GFF2966	0.80	-1.2
3,023,732	+		GFF2966	0.80	-0.3
3,023,732	+		GFF2966	0.80	-2.2
3,023,740	-		GFF2966	0.83	-0.7
3,023,740	-		GFF2966	0.83	-0.5
3,023,740	-		GFF2966	0.83	-2.4
3,023,740	-		GFF2966	0.83	-0.3
3,023,740	-		GFF2966	0.83	-0.2
3,023,742	+		GFF2966	0.84	+0.0
3,023,742	+		GFF2966	0.84	-0.3
3,023,750	-		GFF2966	0.87	-0.9
3,023,750	-		GFF2966	0.87	-0.5
3,023,766	-				+1.2
3,023,770	+				+1.6
3,023,778	-				+0.5
3,023,778	-				-1.0
3,023,788	-				+1.3
3,023,796	+				-0.7
3,023,822	+		GFF2967	0.12	-0.0
3,023,826	-		GFF2967	0.14	-0.2
3,023,906	+		GFF2967	0.40	-0.8
3,023,906	+		GFF2967	0.40	+0.9
3,023,907	+		GFF2967	0.40	-1.3
3,023,907	-		GFF2967	0.40	+1.3
3,023,915	-		GFF2967	0.43	+0.0
3,023,922	+		GFF2967	0.45	-0.7
3,023,930	-		GFF2967	0.48	-1.1
3,023,938	-		GFF2967	0.50	-0.4
3,023,947	+		GFF2967	0.53	+0.3
3,023,955	-		GFF2967	0.56	+0.5
3,023,957	+		GFF2967	0.57	+0.6
3,023,961	-		GFF2967	0.58	-1.2
3,023,965	-		GFF2967	0.59	+0.9
3,023,970	+		GFF2967	0.61	+0.3
3,023,972	+		GFF2967	0.61	+0.1
3,023,978	-		GFF2967	0.63	-1.5
3,024,007	+		GFF2967	0.73	+0.9
3,024,007	+		GFF2967	0.73	-0.2
3,024,007	+		GFF2967	0.73	+0.7
3,024,007	+		GFF2967	0.73	-1.0
3,024,012	+		GFF2967	0.75	+0.1
3,024,012	+		GFF2967	0.75	+1.3
3,024,012	+		GFF2967	0.75	-0.5
3,024,012	+		GFF2967	0.75	-0.6
3,024,012	+		GFF2967	0.75	+0.5
3,024,012	+		GFF2967	0.75	-0.7
3,024,012	+		GFF2967	0.75	+1.0
3,024,012	+		GFF2967	0.75	+0.2
3,024,012	+		GFF2967	0.75	+0.4
3,024,015	-		GFF2967	0.75	-0.3
3,024,019	+		GFF2967	0.77	+0.2
3,024,020	-		GFF2967	0.77	-1.9
3,024,020	-		GFF2967	0.77	-0.8
3,024,020	-		GFF2967	0.77	+0.6
3,024,020	-		GFF2967	0.77	+0.5
3,024,020	-		GFF2967	0.77	-0.4
3,024,020	-		GFF2967	0.77	+1.6
3,024,020	-		GFF2967	0.77	-0.1
3,024,020	-		GFF2967	0.77	-0.2
3,024,020	-		GFF2967	0.77	-0.2
3,024,020	-		GFF2967	0.77	+1.1
3,024,020	-		GFF2967	0.77	-0.3
3,024,020	-		GFF2967	0.77	-0.3
3,024,027	-		GFF2967	0.79	-0.2
3,024,039	+		GFF2967	0.83	+1.6
3,024,053	+		GFF2967	0.88	-0.4
3,024,053	+		GFF2967	0.88	-0.7
3,024,061	-				-0.8
3,024,061	-				-0.1
3,024,061	-				-0.1
3,024,061	-				+0.2
3,024,082	+				-1.0
3,024,082	+				+0.8
3,024,087	+				-0.4
3,024,109	+		GFF2968	0.10	-1.4
3,024,110	-		GFF2968	0.11	+0.9
3,024,112	-		GFF2968	0.12	-0.6
3,024,137	+		GFF2968	0.23	+0.3
3,024,166	-		GFF2968	0.36	+0.3
3,024,205	+		GFF2968	0.53	+0.7
3,024,208	-		GFF2968	0.54	+1.3
3,024,224	-		GFF2968	0.61	+0.4
3,024,224	-		GFF2968	0.61	-0.1
3,024,226	+		GFF2968	0.62	+1.6
3,024,234	-		GFF2968	0.66	-0.7
3,024,243	+		GFF2968	0.70	-0.3
3,024,243	-		GFF2968	0.70	-1.1
3,024,250	+		GFF2968	0.73	-1.9
3,024,269	-		GFF2968	0.81	-1.9
3,024,271	+		GFF2968	0.82	+0.5
3,024,271	+		GFF2968	0.82	+0.3
3,024,276	+		GFF2968	0.84	-1.2
3,024,297	+				-0.1
3,024,305	-				-1.1
3,024,311	-				+0.1
3,024,335	+				+0.8
3,024,335	+				-0.3
3,024,335	+				-1.9
3,024,335	+				-0.1
3,024,335	+				+0.4
3,024,342	-				-1.6
3,024,343	-				+0.3
3,024,343	-				+0.4
3,024,343	-				+0.3
3,024,343	-				+0.3
3,024,343	-				+0.7
3,024,343	-				-1.7
3,024,343	-				-0.8
3,024,343	-				-1.7
3,024,343	-				-1.4
3,024,343	-				-1.5
3,024,343	-				+1.1
3,024,343	-				-0.5
3,024,368	+				-0.7
3,024,385	+				-1.3
3,024,392	-		GFF2969	0.10	+0.3
3,024,426	+		GFF2969	0.26	+0.3
3,024,441	-		GFF2969	0.33	-0.6
3,024,449	-		GFF2969	0.37	-0.7
3,024,476	-		GFF2969	0.50	-0.5
3,024,481	+		GFF2969	0.52	-0.2
3,024,496	-		GFF2969	0.60	+0.6
3,024,508	-		GFF2969	0.65	-0.3
3,024,528	-		GFF2969	0.75	-0.8
3,024,528	-		GFF2969	0.75	-0.2
3,024,531	+		GFF2969	0.76	+0.4
3,024,539	-		GFF2969	0.80	+0.5
3,024,539	-		GFF2969	0.80	+0.0
3,024,541	+		GFF2969	0.81	+0.7
3,024,541	+		GFF2969	0.81	-0.2
3,024,563	-				-1.6
3,024,564	+				+0.6
3,024,564	+				-0.3
3,024,564	+				+1.2
3,024,564	+				-0.2
3,024,564	+				-0.3
3,024,568	-				-1.4
3,024,568	-				-1.3
3,024,569	+				-1.4
3,024,569	+				+0.5
3,024,569	+				+1.1
3,024,572	-				+0.7
3,024,574	+				-2.3
3,024,574	+				+1.3
3,024,574	+				-1.2
3,024,577	-				-1.2
3,024,577	-				-0.2
3,024,577	-				+0.5
3,024,577	-				-0.4
3,024,582	-				+0.6
3,024,582	-				+2.1
3,024,598	+				-0.5
3,024,598	+				+0.5
3,024,598	+				-0.7
3,024,598	+				-2.4
3,024,603	+				-1.5
3,024,606	-				-1.1
3,024,606	-				-2.3
3,024,618	+				-1.4
3,024,623	+				-0.1
3,024,623	+				-0.4
3,024,623	+				-1.0
3,024,623	+				+1.0
3,024,631	+				-0.1
3,024,631	-				+0.9
3,024,631	-				-1.1
3,024,639	-				-0.8
3,024,639	-				-1.6
3,024,640	+				-2.4
3,024,640	-				-1.5
3,024,696	+				+0.1
3,024,720	-		GFF2970	0.11	-1.3
3,024,720	-		GFF2970	0.11	+0.2
3,024,720	-		GFF2970	0.11	-0.7
3,024,720	-		GFF2970	0.11	-0.4
3,024,720	-		GFF2970	0.11	-0.7
3,024,728	+		GFF2970	0.11	-0.1
3,024,728	+		GFF2970	0.11	+0.8
3,024,728	+		GFF2970	0.11	+0.3
3,024,728	+		GFF2970	0.11	-0.7
3,024,728	+		GFF2970	0.11	+0.2
3,024,728	+		GFF2970	0.11	-0.7
3,024,728	+		GFF2970	0.11	-0.9
3,024,728	+		GFF2970	0.11	+1.4
3,024,736	-		GFF2970	0.12	+0.8
3,024,736	-		GFF2970	0.12	-2.3
3,024,736	-		GFF2970	0.12	-0.5
3,024,736	-		GFF2970	0.12	+1.0
3,024,736	-		GFF2970	0.12	+0.4
3,024,736	-		GFF2970	0.12	-0.2
3,024,736	-		GFF2970	0.12	-0.9
3,024,736	-		GFF2970	0.12	-0.7
3,024,736	-		GFF2970	0.12	+1.0
3,024,736	-		GFF2970	0.12	-1.6
3,024,736	-		GFF2970	0.12	+0.0
3,024,736	-		GFF2970	0.12	+0.6
3,024,736	-		GFF2970	0.12	+0.3
3,024,748	+		GFF2970	0.13	+0.6
3,024,756	-		GFF2970	0.14	+0.7
3,024,756	-		GFF2970	0.14	-0.7
3,024,804	+		GFF2970	0.17	-0.8
3,024,804	+		GFF2970	0.17	-0.1
3,024,804	+		GFF2970	0.17	-1.3
3,024,804	+		GFF2970	0.17	+0.5
3,024,804	+		GFF2970	0.17	+0.7
3,024,804	+		GFF2970	0.17	+0.2
3,024,812	-		GFF2970	0.18	-0.7
3,024,812	-		GFF2970	0.18	+1.0
3,024,812	-		GFF2970	0.18	+0.5
3,024,814	+		GFF2970	0.18	+0.8
3,024,814	+		GFF2970	0.18	-0.2
3,024,814	+		GFF2970	0.18	-0.2
3,024,822	-		GFF2970	0.19	+0.0
3,024,822	-		GFF2970	0.19	-0.3
3,024,831	+		GFF2970	0.19	-0.7
3,024,851	+		GFF2970	0.21	-0.0
3,024,851	+		GFF2970	0.21	+1.1
3,024,851	+		GFF2970	0.21	+0.2
3,024,851	+		GFF2970	0.21	+0.5
3,024,851	+		GFF2970	0.21	+0.4
3,024,851	+		GFF2970	0.21	-0.3
3,024,851	+		GFF2970	0.21	-0.9
3,024,859	-		GFF2970	0.22	-1.7
3,024,859	-		GFF2970	0.22	-0.9
3,024,859	-		GFF2970	0.22	-0.6
3,024,859	-		GFF2970	0.22	+1.2
3,024,859	-		GFF2970	0.22	-1.2
3,024,859	-		GFF2970	0.22	-2.5
3,024,859	-		GFF2970	0.22	-0.6
3,024,859	-		GFF2970	0.22	-0.7
3,024,861	-		GFF2970	0.22	-0.2
3,024,880	+		GFF2970	0.23	+0.9
3,024,880	+		GFF2970	0.23	-0.4
3,024,880	+		GFF2970	0.23	-0.1
3,024,880	-		GFF2970	0.23	-0.9
3,024,888	+		GFF2970	0.24	-0.7
3,024,888	+		GFF2970	0.24	-0.1
3,024,888	-		GFF2970	0.24	-0.3
3,024,888	-		GFF2970	0.24	+0.2
3,024,896	-		GFF2970	0.24	-0.4
3,024,898	-		GFF2970	0.25	-1.5
3,024,907	+		GFF2970	0.25	+0.2
3,024,907	+		GFF2970	0.25	-2.4
3,024,907	+		GFF2970	0.25	-0.4
3,024,910	-		GFF2970	0.25	+0.6
3,024,912	+		GFF2970	0.26	+0.4
3,024,912	+		GFF2970	0.26	+0.8
3,024,915	-		GFF2970	0.26	+0.1
3,024,920	-		GFF2970	0.26	-1.9
3,024,920	-		GFF2970	0.26	+0.9
3,024,929	-		GFF2970	0.27	+1.8
3,024,935	-		GFF2970	0.27	-1.0
3,024,948	-		GFF2970	0.28	-1.1
3,024,957	-		GFF2970	0.29	-0.5
3,024,982	+		GFF2970	0.31	-2.1
3,024,986	+		GFF2970	0.31	+0.5
3,024,986	+		GFF2970	0.31	-0.9
3,024,986	+		GFF2970	0.31	-0.4
3,024,986	+		GFF2970	0.31	+0.1
3,024,986	+		GFF2970	0.31	+1.2
3,024,987	+		GFF2970	0.31	-0.5
3,024,987	+		GFF2970	0.31	-1.4
3,024,994	-		GFF2970	0.32	+0.5
3,024,994	-		GFF2970	0.32	-0.7
3,024,994	-		GFF2970	0.32	-1.7
3,024,994	-		GFF2970	0.32	+0.3
3,025,027	-		GFF2970	0.34	-0.4
3,025,029	+		GFF2970	0.35	+0.0
3,025,029	+		GFF2970	0.35	-2.2
3,025,032	-		GFF2970	0.35	-0.3
3,025,047	-		GFF2970	0.36	-0.5
3,025,049	+		GFF2970	0.36	+0.5
3,025,049	+		GFF2970	0.36	-0.2
3,025,056	+		GFF2970	0.37	-0.8
3,025,056	+		GFF2970	0.37	-0.6
3,025,057	-		GFF2970	0.37	-0.5
3,025,057	-		GFF2970	0.37	+0.7
3,025,070	+		GFF2970	0.38	+0.6
3,025,070	+		GFF2970	0.38	+1.2
3,025,070	+		GFF2970	0.38	+0.0
3,025,070	+		GFF2970	0.38	+0.6
3,025,070	+		GFF2970	0.38	-2.0
3,025,074	-		GFF2970	0.38	-1.3
3,025,078	-		GFF2970	0.38	+0.2
3,025,078	-		GFF2970	0.38	-0.5
3,025,078	-		GFF2970	0.38	+0.3
3,025,078	-		GFF2970	0.38	+0.8