Strain Fitness in Sphingobium sp. HT1-2 around GFF2349

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,372,229	-		GFF2347	0.25	+0.2
2,372,230	+		GFF2347	0.25	-0.2
2,372,242	-		GFF2347	0.27	-0.4
2,372,250	+		GFF2347	0.29	-0.6
2,372,250	+		GFF2347	0.29	-1.5
2,372,250	+		GFF2347	0.29	-0.3
2,372,258	-		GFF2347	0.30	+0.7
2,372,258	-		GFF2347	0.30	+0.2
2,372,258	-		GFF2347	0.30	-0.4
2,372,263	-		GFF2347	0.31	+0.0
2,372,267	+		GFF2347	0.32	-1.3
2,372,267	+		GFF2347	0.32	-1.1
2,372,267	+		GFF2347	0.32	+0.3
2,372,267	+		GFF2347	0.32	-0.1
2,372,267	+		GFF2347	0.32	+0.5
2,372,267	+		GFF2347	0.32	+0.1
2,372,267	+		GFF2347	0.32	-2.0
2,372,275	-		GFF2347	0.34	+0.0
2,372,275	-		GFF2347	0.34	-0.8
2,372,279	+		GFF2347	0.34	-1.9
2,372,279	+		GFF2347	0.34	-1.0
2,372,287	-		GFF2347	0.36	-0.4
2,372,287	-		GFF2347	0.36	+0.2
2,372,287	-		GFF2347	0.36	-0.5
2,372,309	+		GFF2347	0.40	+0.9
2,372,312	-		GFF2347	0.40	+0.1
2,372,323	+		GFF2347	0.42	-0.1
2,372,323	+		GFF2347	0.42	-0.6
2,372,331	-		GFF2347	0.44	+1.1
2,372,331	-		GFF2347	0.44	+0.4
2,372,352	-		GFF2347	0.48	-0.0
2,372,352	-		GFF2347	0.48	-2.4
2,372,360	+		GFF2347	0.49	+1.3
2,372,363	-		GFF2347	0.50	+0.8
2,372,365	+		GFF2347	0.50	-0.3
2,372,365	+		GFF2347	0.50	-0.7
2,372,365	+		GFF2347	0.50	-2.2
2,372,373	-		GFF2347	0.52	-1.1
2,372,373	-		GFF2347	0.52	-2.3
2,372,373	-		GFF2347	0.52	-0.9
2,372,404	-		GFF2347	0.57	-0.3
2,372,404	-		GFF2347	0.57	+0.8
2,372,501	+		GFF2347	0.75	+0.5
2,372,522	-		GFF2347	0.79	-0.0
2,372,522	-		GFF2347	0.79	+0.4
2,372,522	-		GFF2347	0.79	+0.1
2,372,522	-		GFF2347	0.79	+0.0
2,372,545	+		GFF2347	0.83	+0.4
2,372,545	+		GFF2347	0.83	+1.3
2,372,545	+		GFF2347	0.83	-0.6
2,372,545	+		GFF2347	0.83	-1.4
2,372,545	+		GFF2347	0.83	+0.6
2,372,545	+		GFF2347	0.83	+1.0
2,372,545	+		GFF2347	0.83	-0.3
2,372,553	-		GFF2347	0.85	-0.8
2,372,553	-		GFF2347	0.85	-0.6
2,372,553	-		GFF2347	0.85	-2.0
2,372,555	+		GFF2347	0.85	-0.9
2,372,563	-		GFF2347	0.87	+1.2
2,372,587	+				+0.0
2,372,593	-				+1.0
2,372,601	-				-0.3
2,372,624	-				+0.3
2,372,637	-				-2.1
2,372,679	+				-0.2
2,372,684	+				-0.1
2,372,761	+		GFF2348	0.21	+1.0
2,372,761	-		GFF2348	0.21	+1.4
2,372,782	+		GFF2348	0.24	+0.9
2,372,790	-		GFF2348	0.26	-1.3
2,372,790	-		GFF2348	0.26	-1.5
2,372,792	+		GFF2348	0.26	-0.1
2,372,792	+		GFF2348	0.26	-0.3
2,372,792	+		GFF2348	0.26	+0.8
2,372,792	+		GFF2348	0.26	-1.6
2,372,800	-		GFF2348	0.27	+0.1
2,372,800	-		GFF2348	0.27	-1.2
2,372,800	-		GFF2348	0.27	+0.7
2,372,800	-		GFF2348	0.27	-1.4
2,372,800	-		GFF2348	0.27	+2.2
2,372,842	-		GFF2348	0.35	-1.8
2,372,874	+		GFF2348	0.40	+1.2
2,372,876	+		GFF2348	0.41	+0.2
2,372,882	-		GFF2348	0.42	+0.1
2,372,882	-		GFF2348	0.42	+0.4
2,372,882	-		GFF2348	0.42	-0.4
2,372,884	-		GFF2348	0.42	-0.1
2,372,895	+		GFF2348	0.44	+0.4
2,372,924	+		GFF2348	0.49	-0.5
2,372,924	+		GFF2348	0.49	+0.2
2,372,924	+		GFF2348	0.49	+0.9
2,372,932	-		GFF2348	0.50	-0.2
2,372,941	+		GFF2348	0.52	-0.9
2,372,942	+		GFF2348	0.52	-0.3
2,372,942	+		GFF2348	0.52	+0.2
2,372,950	-		GFF2348	0.53	+0.1
2,372,965	-		GFF2348	0.56	+1.2
2,372,965	-		GFF2348	0.56	+0.8
2,372,967	+		GFF2348	0.56	-1.6
2,372,967	-		GFF2348	0.56	-1.2
2,372,977	+		GFF2348	0.58	-0.4
2,372,977	-		GFF2348	0.58	-0.1
2,372,977	-		GFF2348	0.58	-1.0
2,372,982	-		GFF2348	0.59	+0.4
2,373,000	-		GFF2348	0.62	+0.7
2,373,052	+		GFF2348	0.71	+1.4
2,373,059	-		GFF2348	0.72	-1.6
2,373,082	-		GFF2348	0.76	-2.5
2,373,086	-		GFF2348	0.77	-0.8
2,373,110	+		GFF2348	0.81	-0.1
2,373,110	+		GFF2348	0.81	+1.2
2,373,118	-		GFF2348	0.82	+1.1
2,373,118	-		GFF2348	0.82	+0.3
2,373,118	-		GFF2348	0.82	-0.3
2,373,138	+		GFF2348	0.86	-1.5
2,373,138	+		GFF2348	0.86	+0.9
2,373,167	-				+0.7
2,373,168	-				-1.1
2,373,168	-				-0.8
2,373,185	+				+1.2
2,373,193	+				+0.2
2,373,195	-				+1.1
2,373,211	-				-0.6
2,373,211	-				-0.2
2,373,211	-				-0.1
2,373,227	+				+1.0
2,373,227	+				-0.1
2,373,227	+				+0.1
2,373,235	-				+1.3
2,373,235	-				-0.2
2,373,235	-				+0.9
2,373,235	-				+0.8
2,373,260	+				+1.2
2,373,312	-				-0.3
2,373,312	-				-1.6
2,373,345	-		GFF2349	0.13	-2.4
2,373,358	-		GFF2349	0.14	+0.1
2,373,376	-		GFF2349	0.16	-0.0
2,373,391	+		GFF2349	0.18	-1.6
2,373,396	+		GFF2349	0.19	-0.3
2,373,399	-		GFF2349	0.19	+0.0
2,373,431	+		GFF2349	0.23	+0.4
2,373,461	-		GFF2349	0.26	-0.2
2,373,461	-		GFF2349	0.26	-0.0
2,373,473	+		GFF2349	0.27	-0.6
2,373,480	-		GFF2349	0.28	+0.9
2,373,481	-		GFF2349	0.28	+1.4
2,373,481	-		GFF2349	0.28	+0.2
2,373,538	-		GFF2349	0.34	-0.4
2,373,579	+		GFF2349	0.39	+0.6
2,373,605	-		GFF2349	0.42	-1.7
2,373,605	-		GFF2349	0.42	-0.4
2,373,611	+		GFF2349	0.43	-0.2
2,373,619	-		GFF2349	0.43	+0.4
2,373,644	+		GFF2349	0.46	+1.3
2,373,664	+		GFF2349	0.48	+0.5
2,373,671	+		GFF2349	0.49	-0.3
2,373,679	+		GFF2349	0.50	-2.1
2,373,703	+		GFF2349	0.53	-0.0
2,373,727	+		GFF2349	0.56	+0.6
2,373,727	+		GFF2349	0.56	-0.2
2,373,728	+		GFF2349	0.56	-1.5
2,373,735	-		GFF2349	0.56	-0.6
2,373,738	+		GFF2349	0.57	-0.1
2,373,795	+		GFF2349	0.63	-1.3
2,373,800	+		GFF2349	0.64	+0.6
2,373,803	-		GFF2349	0.64	-0.8
2,373,805	+		GFF2349	0.64	-0.2
2,373,813	-		GFF2349	0.65	-0.2
2,373,813	-		GFF2349	0.65	-1.5
2,373,829	+		GFF2349	0.67	-1.5
2,373,829	+		GFF2349	0.67	-0.9
2,373,829	+		GFF2349	0.67	+0.3
2,373,829	+		GFF2349	0.67	+0.7
2,373,829	+		GFF2349	0.67	-0.6
2,373,829	+		GFF2349	0.67	-0.9
2,373,830	-		GFF2349	0.67	+0.4
2,373,830	-		GFF2349	0.67	+0.2
2,373,837	-		GFF2349	0.68	-0.1
2,373,837	-		GFF2349	0.68	-0.3
2,373,846	-		GFF2349	0.69	-1.1
2,373,860	+		GFF2349	0.70	-0.5
2,373,860	+		GFF2349	0.70	+0.1
2,373,860	+		GFF2349	0.70	-0.6
2,373,860	+		GFF2349	0.70	+1.1
2,373,868	-		GFF2349	0.71	-1.0
2,373,868	-		GFF2349	0.71	+0.8
2,373,868	-		GFF2349	0.71	+0.0
2,373,868	-		GFF2349	0.71	-0.7
2,373,868	-		GFF2349	0.71	+0.0
2,373,870	+		GFF2349	0.71	-1.0
2,373,878	-		GFF2349	0.72	+0.8
2,373,898	+		GFF2349	0.75	+0.4
2,373,898	+		GFF2349	0.75	-0.3
2,373,907	-		GFF2349	0.76	-0.6
2,373,916	+		GFF2349	0.77	-1.3
2,373,916	+		GFF2349	0.77	+0.9
2,373,917	+		GFF2349	0.77	-1.0
2,373,921	+		GFF2349	0.77	+0.1
2,373,921	+		GFF2349	0.77	-1.9
2,373,923	-		GFF2349	0.77	+0.8
2,373,929	+		GFF2349	0.78	-2.5
2,373,944	+		GFF2349	0.80	+0.9
2,373,944	+		GFF2349	0.80	+1.0
2,373,954	-		GFF2349	0.81	+0.7
2,373,954	-		GFF2349	0.81	+0.9
2,373,959	+		GFF2349	0.81	+0.2
2,374,001	-		GFF2349	0.86	-0.3
2,374,016	-		GFF2349	0.88	-0.0
2,374,042	-				+0.4
2,374,067	+				+1.0
2,374,077	+				-0.3
2,374,077	+				-2.2
2,374,085	+				-0.1
2,374,085	+				-0.1
2,374,090	+				-1.1
2,374,090	+				-1.8
2,374,090	+				+1.8
2,374,090	+				-0.6
2,374,090	+				-0.2
2,374,090	+				-1.1
2,374,093	-				-0.2
2,374,093	-				-0.7
2,374,095	+				-0.1
2,374,098	-				+0.2
2,374,098	-				-0.8
2,374,098	-				+0.1
2,374,098	-				+0.8
2,374,098	-				-0.3
2,374,098	-				-0.2
2,374,098	-				-0.2
2,374,098	-				-0.8
2,374,098	-				+0.7
2,374,098	-				-1.1
2,374,098	-				-0.5
2,374,098	-				+1.2
2,374,103	-				+0.6
2,374,118	-				+1.1
2,374,165	-				+0.9
2,374,207	+		GFF2350	0.15	-1.9
2,374,215	-		GFF2350	0.17	+0.2
2,374,216	+		GFF2350	0.17	-1.8
2,374,224	-		GFF2350	0.19	+2.2
2,374,239	+		GFF2350	0.23	-1.7
2,374,239	+		GFF2350	0.23	+0.5
2,374,239	+		GFF2350	0.23	-1.9
2,374,239	+		GFF2350	0.23	-1.3
2,374,247	-		GFF2350	0.25	+0.9
2,374,247	-		GFF2350	0.25	+0.1
2,374,247	-		GFF2350	0.25	-0.7
2,374,247	-		GFF2350	0.25	-0.0
2,374,247	-		GFF2350	0.25	+0.0
2,374,247	-		GFF2350	0.25	+1.4
2,374,247	-		GFF2350	0.25	-1.8
2,374,257	-		GFF2350	0.28	-0.3
2,374,259	-		GFF2350	0.28	-1.2
2,374,300	+		GFF2350	0.39	-2.1
2,374,334	-		GFF2350	0.48	+1.1
2,374,336	+		GFF2350	0.48	+0.4
2,374,359	+		GFF2350	0.54	-2.6
2,374,359	+		GFF2350	0.54	+0.5
2,374,359	+		GFF2350	0.54	+1.1
2,374,359	+		GFF2350	0.54	-1.1
2,374,359	+		GFF2350	0.54	+0.7
2,374,367	-		GFF2350	0.56	-0.4
2,374,367	-		GFF2350	0.56	+0.6
2,374,367	-		GFF2350	0.56	-1.2
2,374,367	-		GFF2350	0.56	+0.2
2,374,367	-		GFF2350	0.56	-1.1
2,374,367	-		GFF2350	0.56	+0.1
2,374,367	-		GFF2350	0.56	+0.6
2,374,367	-		GFF2350	0.56	-1.5
2,374,386	-		GFF2350	0.61	+0.0
2,374,395	+		GFF2350	0.63	-0.4
2,374,395	+		GFF2350	0.63	-0.1
2,374,402	-		GFF2350	0.65	-0.6
2,374,404	-		GFF2350	0.66	-1.4
2,374,417	-		GFF2350	0.69	+1.2
2,374,433	-		GFF2350	0.73	-0.1
2,374,442	+		GFF2350	0.75	-1.5
2,374,459	-		GFF2350	0.80	+0.8
2,374,494	+		GFF2350	0.89	+0.9
2,374,494	+		GFF2350	0.89	-0.1
2,374,502	-				+0.2
2,374,502	-				+0.2
2,374,505	+				-0.2
2,374,535	+				+0.2
2,374,603	+		GFF2351	0.24	-0.8
2,374,616	-		GFF2351	0.29	+0.2
2,374,617	+		GFF2351	0.30	-0.2
2,374,623	+		GFF2351	0.32	+1.8
2,374,627	+		GFF2351	0.33	+0.0
2,374,627	+		GFF2351	0.33	-1.2
2,374,634	+		GFF2351	0.36	+0.6
2,374,635	-		GFF2351	0.36	-1.0
2,374,644	+		GFF2351	0.40	+0.6
2,374,644	+		GFF2351	0.40	+0.0
2,374,652	-		GFF2351	0.43	+1.0
2,374,652	-		GFF2351	0.43	+0.5
2,374,659	-		GFF2351	0.45	-1.3
2,374,664	+		GFF2351	0.47	+0.5
2,374,672	-		GFF2351	0.50	-0.8
2,374,690	+		GFF2351	0.57	+1.5
2,374,711	+		GFF2351	0.64	-0.1
2,374,728	+		GFF2351	0.71	+0.4
2,374,731	-		GFF2351	0.72	+0.2
2,374,735	+		GFF2351	0.73	+0.4
2,374,736	-		GFF2351	0.74	+0.2
2,374,736	-		GFF2351	0.74	-0.1
2,374,770	-		GFF2351	0.86	+0.2
2,374,776	-		GFF2351	0.89	-0.0
2,374,792	+				+0.9
2,374,793	+				+0.3
2,374,796	-				+0.1
2,374,796	-				+0.0
2,374,801	-				-1.4
2,374,801	-				-0.6
2,374,848	+				-1.1
2,374,848	+				-0.6
2,374,848	+				+0.4
2,374,854	+				+0.4
2,374,866	-				+0.4
2,374,866	-				-0.3
2,374,866	-				+0.5
2,374,876	+				-0.3
2,374,884	-		GFF2352	0.11	-0.6