Strain Fitness in Sphingobium sp. HT1-2 around GFF1041

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,044,070	-				-0.9
1,044,075	-				-0.4
1,044,075	-				+1.1
1,044,077	+				-1.5
1,044,077	+				+0.9
1,044,077	+				-0.7
1,044,077	+				+0.5
1,044,077	+				-1.5
1,044,077	+				-1.2
1,044,078	-				-0.4
1,044,085	-				-1.2
1,044,085	-				-1.3
1,044,085	-				-1.3
1,044,085	-				+0.2
1,044,085	-				-1.8
1,044,085	-				-0.0
1,044,093	+				+0.6
1,044,108	+				+0.2
1,044,108	+				+0.4
1,044,108	+				-0.0
1,044,116	-				-2.8
1,044,116	-				-1.9
1,044,120	-				+0.8
1,044,139	+				-1.2
1,044,139	+				+0.4
1,044,139	+				+0.6
1,044,139	+				-0.4
1,044,139	+				-0.1
1,044,142	-				-1.4
1,044,147	-				-1.3
1,044,147	-				-2.6
1,044,147	-				-1.8
1,044,147	-				+1.0
1,044,147	-				-0.4
1,044,154	+				+0.5
1,044,154	+				+0.2
1,044,159	+				-1.5
1,044,167	-				+0.0
1,044,169	+				-0.9
1,044,169	+				+1.2
1,044,177	-				-0.2
1,044,177	-				+0.1
1,044,177	-				-1.1
1,044,181	+				+0.4
1,044,181	+				-0.3
1,044,181	+				+0.5
1,044,181	+				+0.3
1,044,189	-				-1.2
1,044,204	+				+0.5
1,044,212	-				-0.2
1,044,222	-				+0.8
1,044,233	-				-1.7
1,044,258	-				+0.2
1,044,258	-				-1.9
1,044,258	-				-0.6
1,044,264	+				-0.0
1,044,282	+				+1.3
1,044,282	-				+0.3
1,044,299	+		GFF1040	0.11	+0.2
1,044,307	-		GFF1040	0.12	-1.2
1,044,318	-		GFF1040	0.13	-0.6
1,044,318	-		GFF1040	0.13	+2.0
1,044,319	+		GFF1040	0.13	+0.2
1,044,319	+		GFF1040	0.13	-0.2
1,044,327	-		GFF1040	0.14	-0.3
1,044,340	-		GFF1040	0.16	-0.0
1,044,356	+		GFF1040	0.18	+0.4
1,044,357	-		GFF1040	0.19	-0.4
1,044,364	-		GFF1040	0.20	+0.6
1,044,386	-		GFF1040	0.23	-2.2
1,044,439	-		GFF1040	0.30	-1.4
1,044,444	-		GFF1040	0.30	-0.7
1,044,451	+		GFF1040	0.31	-2.3
1,044,451	+		GFF1040	0.31	-1.4
1,044,452	-		GFF1040	0.32	-1.5
1,044,459	-		GFF1040	0.33	+0.4
1,044,459	-		GFF1040	0.33	-0.3
1,044,461	+		GFF1040	0.33	+0.1
1,044,461	+		GFF1040	0.33	+0.3
1,044,461	+		GFF1040	0.33	-1.2
1,044,466	+		GFF1040	0.33	+0.4
1,044,466	+		GFF1040	0.33	-1.2
1,044,469	-		GFF1040	0.34	-1.5
1,044,469	-		GFF1040	0.34	-1.4
1,044,470	-		GFF1040	0.34	+0.3
1,044,470	-		GFF1040	0.34	-1.3
1,044,474	-		GFF1040	0.35	-1.7
1,044,474	-		GFF1040	0.35	-0.1
1,044,498	+		GFF1040	0.38	-0.7
1,044,505	-		GFF1040	0.39	-1.5
1,044,515	+		GFF1040	0.40	-1.4
1,044,539	+		GFF1040	0.43	-0.9
1,044,539	+		GFF1040	0.43	+0.4
1,044,558	+		GFF1040	0.46	-0.8
1,044,563	+		GFF1040	0.47	+1.5
1,044,563	+		GFF1040	0.47	-1.9
1,044,566	-		GFF1040	0.47	-0.2
1,044,566	-		GFF1040	0.47	-0.1
1,044,571	-		GFF1040	0.48	+1.6
1,044,580	+		GFF1040	0.49	-0.3
1,044,583	-		GFF1040	0.49	-2.7
1,044,605	+		GFF1040	0.52	+0.5
1,044,616	+		GFF1040	0.54	-1.0
1,044,616	+		GFF1040	0.54	+1.0
1,044,669	+		GFF1040	0.61	+1.6
1,044,707	-		GFF1040	0.66	-0.2
1,044,735	+		GFF1040	0.70	-2.2
1,044,744	+		GFF1040	0.71	-0.0
1,044,744	+		GFF1040	0.71	+0.5
1,044,744	+		GFF1040	0.71	-0.9
1,044,744	+		GFF1040	0.71	-1.9
1,044,745	-		GFF1040	0.72	-0.1
1,044,752	-		GFF1040	0.73	+0.1
1,044,752	-		GFF1040	0.73	+0.1
1,044,752	-		GFF1040	0.73	-0.6
1,044,754	+		GFF1040	0.73	-0.6
1,044,754	+		GFF1040	0.73	-1.6
1,044,754	+		GFF1040	0.73	-0.5
1,044,762	-		GFF1040	0.74	-1.5
1,044,762	-		GFF1040	0.74	+1.1
1,044,793	+		GFF1040	0.78	+0.9
1,044,801	-		GFF1040	0.79	-0.4
1,044,833	+		GFF1040	0.84	-1.7
1,044,833	+		GFF1040	0.84	-0.0
1,044,834	-		GFF1040	0.84	-0.8
1,044,834	-		GFF1040	0.84	+0.2
1,044,835	-		GFF1040	0.84	-1.0
1,044,848	+		GFF1040	0.86	+1.9
1,044,848	+		GFF1040	0.86	+0.0
1,044,848	+		GFF1040	0.86	-0.2
1,044,851	-		GFF1040	0.86	-0.1
1,044,853	+		GFF1040	0.86	+0.8
1,044,861	-		GFF1040	0.87	-0.7
1,044,874	-		GFF1040	0.89	-0.3
1,044,874	-		GFF1040	0.89	-1.3
1,044,876	+		GFF1040	0.89	+0.9
1,044,876	+		GFF1040	0.89	+1.5
1,044,908	+				+0.2
1,044,911	-				+1.1
1,044,916	-				+0.7
1,044,934	-				+0.6
1,044,946	+				-0.8
1,044,947	-				+1.2
1,044,949	-				-1.7
1,044,949	-				-0.3
1,044,956	-				+1.1
1,044,979	+				-1.5
1,044,979	+				+0.5
1,044,983	-				+0.4
1,044,986	-				+1.0
1,044,990	+				+0.2
1,045,016	+				-1.5
1,045,026	+				+0.1
1,045,031	+				-0.7
1,045,032	-				-0.4
1,045,034	+				-0.5
1,045,034	+				+1.3
1,045,034	+				-0.4
1,045,034	+				+1.3
1,045,034	+				+0.4
1,045,039	+				-0.2
1,045,039	+				+0.7
1,045,042	-				-1.4
1,045,052	-				+1.3
1,045,060	-				-1.2
1,045,113	-				-1.9
1,045,128	+				-0.4
1,045,136	+				+0.5
1,045,136	-				-2.5
1,045,141	-				+0.4
1,045,141	-				+1.8
1,045,149	+				+0.1
1,045,149	+				-0.8
1,045,157	-				-0.9
1,045,175	+				+2.4
1,045,183	+				-1.7
1,045,200	-				-0.5
1,045,211	+				-0.3
1,045,212	-				-0.0
1,045,217	+				-0.6
1,045,230	-				-0.0
1,045,238	-				+0.5
1,045,248	+				-2.3
1,045,253	+				+1.0
1,045,274	+				-0.1
1,045,274	+				+0.1
1,045,274	+				-1.9
1,045,275	-				+0.1
1,045,280	+				+0.8
1,045,282	-				-0.2
1,045,287	-				-1.8
1,045,288	+				+0.6
1,045,295	+				-1.1
1,045,295	+				+0.3
1,045,296	-				-0.1
1,045,303	-				-0.6
1,045,310	+				-0.9
1,045,311	+				-1.8
1,045,319	-				-0.8
1,045,324	-				-0.3
1,045,342	-				+2.0
1,045,347	-				+0.3
1,045,347	-				-1.6
1,045,347	-				-1.5
1,045,348	-				-0.3
1,045,348	-				-1.5
1,045,373	+		GFF1041	0.10	-0.4
1,045,381	-		GFF1041	0.10	-0.6
1,045,381	-		GFF1041	0.10	-0.4
1,045,386	-		GFF1041	0.11	+0.6
1,045,393	+		GFF1041	0.11	-0.6
1,045,393	+		GFF1041	0.11	+0.6
1,045,393	+		GFF1041	0.11	+0.5
1,045,393	+		GFF1041	0.11	-1.5
1,045,393	+		GFF1041	0.11	-0.4
1,045,393	+		GFF1041	0.11	-0.5
1,045,401	-		GFF1041	0.11	+0.1
1,045,401	-		GFF1041	0.11	-2.0
1,045,401	-		GFF1041	0.11	-1.8
1,045,401	-		GFF1041	0.11	-0.8
1,045,406	-		GFF1041	0.11	+0.8
1,045,411	+		GFF1041	0.11	+0.4
1,045,438	+		GFF1041	0.12	+0.5
1,045,438	+		GFF1041	0.12	-0.1
1,045,441	-		GFF1041	0.12	+1.2
1,045,444	-		GFF1041	0.13	+0.5
1,045,444	-		GFF1041	0.13	-0.9
1,045,446	-		GFF1041	0.13	-0.1
1,045,446	-		GFF1041	0.13	-1.1
1,045,457	-		GFF1041	0.13	+0.4
1,045,458	-		GFF1041	0.13	-0.2
1,045,467	+		GFF1041	0.13	-1.5
1,045,475	-		GFF1041	0.14	-1.3
1,045,480	-		GFF1041	0.14	+0.2
1,045,495	+		GFF1041	0.14	-0.6
1,045,495	+		GFF1041	0.14	-0.6
1,045,495	+		GFF1041	0.14	-1.2
1,045,503	-		GFF1041	0.15	-1.3
1,045,503	-		GFF1041	0.15	+0.5
1,045,523	+		GFF1041	0.15	-2.4
1,045,533	-		GFF1041	0.16	-1.6
1,045,547	-		GFF1041	0.16	-0.0
1,045,552	+		GFF1041	0.16	-0.8
1,045,568	+		GFF1041	0.17	+0.3
1,045,596	-		GFF1041	0.18	+0.9
1,045,646	+		GFF1041	0.19	-0.5
1,045,646	+		GFF1041	0.19	-2.2
1,045,654	-		GFF1041	0.20	-0.7
1,045,654	-		GFF1041	0.20	+1.3
1,045,654	-		GFF1041	0.20	-2.9
1,045,659	-		GFF1041	0.20	-1.6
1,045,659	-		GFF1041	0.20	+1.1
1,045,684	+		GFF1041	0.21	-1.5
1,045,685	+		GFF1041	0.21	-1.0
1,045,685	+		GFF1041	0.21	-0.4
1,045,689	+		GFF1041	0.21	+0.2
1,045,689	+		GFF1041	0.21	+1.0
1,045,692	-		GFF1041	0.21	+0.7
1,045,695	+		GFF1041	0.21	+0.6
1,045,728	+		GFF1041	0.22	-0.1
1,045,736	-		GFF1041	0.22	+0.6
1,045,736	-		GFF1041	0.22	-0.6
1,045,748	+		GFF1041	0.23	-2.2
1,045,756	-		GFF1041	0.23	-0.2
1,045,769	+		GFF1041	0.24	+1.0
1,045,787	-		GFF1041	0.24	-0.3
1,045,801	-		GFF1041	0.25	-0.5
1,045,823	+		GFF1041	0.25	-1.2
1,045,848	+		GFF1041	0.26	+0.0
1,045,866	+		GFF1041	0.27	-1.0
1,045,897	-		GFF1041	0.28	+0.4
1,045,914	+		GFF1041	0.28	+0.3
1,045,923	-		GFF1041	0.29	-0.6
1,045,941	+		GFF1041	0.29	-0.3
1,045,946	+		GFF1041	0.29	-2.4
1,045,949	-		GFF1041	0.30	-0.7
1,045,956	-		GFF1041	0.30	+1.2
1,045,957	+		GFF1041	0.30	-0.4
1,045,958	+		GFF1041	0.30	+0.0
1,045,969	+		GFF1041	0.30	-1.9
1,046,006	+		GFF1041	0.31	-0.4
1,046,006	-		GFF1041	0.31	+0.4
1,046,040	+		GFF1041	0.33	+1.3
1,046,048	-		GFF1041	0.33	+0.7
1,046,059	+		GFF1041	0.33	-0.0
1,046,065	-		GFF1041	0.33	-0.9
1,046,068	+		GFF1041	0.34	-0.8
1,046,068	+		GFF1041	0.34	+0.4
1,046,075	-		GFF1041	0.34	-0.4
1,046,076	-		GFF1041	0.34	-0.8
1,046,077	-		GFF1041	0.34	+0.5
1,046,095	+		GFF1041	0.34	+0.8
1,046,095	+		GFF1041	0.34	-1.0
1,046,103	-		GFF1041	0.35	-0.8
1,046,114	+		GFF1041	0.35	+0.0
1,046,114	+		GFF1041	0.35	+0.1
1,046,114	+		GFF1041	0.35	-1.0
1,046,114	+		GFF1041	0.35	-0.4
1,046,114	+		GFF1041	0.35	-0.4
1,046,122	-		GFF1041	0.35	-0.6
1,046,122	-		GFF1041	0.35	-1.7
1,046,122	-		GFF1041	0.35	-0.2
1,046,122	-		GFF1041	0.35	+0.1
1,046,122	-		GFF1041	0.35	-0.5
1,046,122	-		GFF1041	0.35	-1.4
1,046,144	+		GFF1041	0.36	-0.4
1,046,157	-		GFF1041	0.37	+0.1
1,046,167	-		GFF1041	0.37	+0.6
1,046,192	+		GFF1041	0.38	+0.1
1,046,200	+		GFF1041	0.38	-1.9
1,046,200	-		GFF1041	0.38	-1.0
1,046,210	-		GFF1041	0.38	+1.0
1,046,213	+		GFF1041	0.38	+0.8
1,046,223	+		GFF1041	0.39	-0.9
1,046,223	+		GFF1041	0.39	+0.5
1,046,231	-		GFF1041	0.39	-0.4
1,046,277	+		GFF1041	0.41	-2.8
1,046,292	+		GFF1041	0.41	+0.4
1,046,298	+		GFF1041	0.41	-1.7
1,046,298	+		GFF1041	0.41	+1.2
1,046,370	+		GFF1041	0.44	-1.2
1,046,370	+		GFF1041	0.44	-2.4
1,046,376	-		GFF1041	0.44	+0.8
1,046,378	+		GFF1041	0.44	+0.6
1,046,378	-		GFF1041	0.44	-0.8
1,046,397	-		GFF1041	0.45	+0.1
1,046,411	-		GFF1041	0.45	+1.1
1,046,414	+		GFF1041	0.45	+0.6
1,046,422	-		GFF1041	0.45	-0.2
1,046,424	+		GFF1041	0.46	+0.7
1,046,424	+		GFF1041	0.46	-2.2
1,046,435	+		GFF1041	0.46	-0.9
1,046,435	+		GFF1041	0.46	+0.6
1,046,435	+		GFF1041	0.46	-0.1
1,046,435	+		GFF1041	0.46	-0.7
1,046,443	-		GFF1041	0.46	+0.6
1,046,443	-		GFF1041	0.46	-1.4
1,046,443	-		GFF1041	0.46	-1.2
1,046,454	+		GFF1041	0.47	-0.4
1,046,454	+		GFF1041	0.47	-1.9
1,046,454	+		GFF1041	0.47	+1.0
1,046,460	+		GFF1041	0.47	-0.5
1,046,460	+		GFF1041	0.47	+0.6
1,046,462	-		GFF1041	0.47	+0.2
1,046,462	-		GFF1041	0.47	+1.8
1,046,468	-		GFF1041	0.47	-1.2
1,046,468	-		GFF1041	0.47	-1.2
1,046,468	-		GFF1041	0.47	+1.1
1,046,468	-		GFF1041	0.47	-1.5
1,046,526	+		GFF1041	0.49	+0.8
1,046,554	+		GFF1041	0.50	+0.3
1,046,555	+		GFF1041	0.50	+0.0
1,046,567	+		GFF1041	0.50	+0.7
1,046,568	-		GFF1041	0.50	-1.4
1,046,573	+		GFF1041	0.51	+0.1
1,046,575	+		GFF1041	0.51	-1.4
1,046,575	-		GFF1041	0.51	+0.8
1,046,622	-		GFF1041	0.52	-0.3
1,046,662	-		GFF1041	0.54	+0.3
1,046,690	+		GFF1041	0.54	-2.2
1,046,690	+		GFF1041	0.54	-2.0
1,046,695	+		GFF1041	0.55	+0.0
1,046,703	-		GFF1041	0.55	+0.1
1,046,703	-		GFF1041	0.55	-0.2
1,046,715	-		GFF1041	0.55	+1.1
1,046,715	-		GFF1041	0.55	+0.6
1,046,723	+		GFF1041	0.56	-0.5
1,046,723	+		GFF1041	0.56	-1.5
1,046,731	-		GFF1041	0.56	-0.9
1,046,733	+		GFF1041	0.56	+0.2
1,046,733	+		GFF1041	0.56	-1.5
1,046,738	+		GFF1041	0.56	+0.4
1,046,738	+		GFF1041	0.56	+0.5
1,046,738	+		GFF1041	0.56	+0.1
1,046,738	+		GFF1041	0.56	+0.4
1,046,738	+		GFF1041	0.56	-1.9
1,046,738	+		GFF1041	0.56	-0.1
1,046,738	+		GFF1041	0.56	-0.1
1,046,738	+		GFF1041	0.56	-0.6
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