Strain Fitness in Sphingobium sp. HT1-2 around GFF4432

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,425,268	-		GFF4430	0.38	-2.2
4,425,268	-		GFF4430	0.38	-0.8
4,425,268	-		GFF4430	0.38	-0.9
4,425,268	-		GFF4430	0.38	-1.0
4,425,268	-		GFF4430	0.38	+0.3
4,425,268	-		GFF4430	0.38	-0.8
4,425,288	+		GFF4430	0.41	+1.0
4,425,288	+		GFF4430	0.41	+0.4
4,425,309	+		GFF4430	0.43	-1.4
4,425,315	-		GFF4430	0.43	-1.3
4,425,321	+		GFF4430	0.44	-0.4
4,425,321	+		GFF4430	0.44	-2.2
4,425,326	+		GFF4430	0.45	-0.6
4,425,329	-		GFF4430	0.45	+0.7
4,425,333	+		GFF4430	0.45	-2.0
4,425,334	-		GFF4430	0.45	+0.7
4,425,334	-		GFF4430	0.45	+0.8
4,425,388	-		GFF4430	0.51	-0.1
4,425,393	+		GFF4430	0.52	-0.9
4,425,397	-		GFF4430	0.52	-0.3
4,425,401	-		GFF4430	0.53	-2.1
4,425,402	-		GFF4430	0.53	+0.6
4,425,433	+		GFF4430	0.56	+1.6
4,425,433	+		GFF4430	0.56	+0.1
4,425,436	-		GFF4430	0.56	-0.8
4,425,445	-		GFF4430	0.57	-2.8
4,425,451	+		GFF4430	0.58	+1.3
4,425,463	+		GFF4430	0.59	-1.7
4,425,470	+		GFF4430	0.60	-1.1
4,425,471	-		GFF4430	0.60	-0.3
4,425,477	+		GFF4430	0.61	-0.9
4,425,478	-		GFF4430	0.61	+0.8
4,425,485	+		GFF4430	0.62	-2.1
4,425,486	-		GFF4430	0.62	-2.4
4,425,487	+		GFF4430	0.62	-0.2
4,425,508	-		GFF4430	0.64	-0.9
4,425,513	+		GFF4430	0.65	-0.5
4,425,524	+		GFF4430	0.66	-2.3
4,425,529	+		GFF4430	0.66	-0.7
4,425,534	+		GFF4430	0.67	+0.7
4,425,553	+		GFF4430	0.69	+0.2
4,425,555	-		GFF4430	0.69	-1.7
4,425,558	+		GFF4430	0.70	-2.0
4,425,558	+		GFF4430	0.70	-0.1
4,425,563	+		GFF4430	0.70	-1.3
4,425,566	-		GFF4430	0.70	+1.1
4,425,566	-		GFF4430	0.70	+0.3
4,425,566	-		GFF4430	0.70	+1.0
4,425,566	-		GFF4430	0.70	+0.8
4,425,566	-		GFF4430	0.70	-1.0
4,425,566	-		GFF4430	0.70	-0.8
4,425,566	-		GFF4430	0.70	-0.2
4,425,566	-		GFF4430	0.70	+0.2
4,425,566	-		GFF4430	0.70	+0.6
4,425,568	+		GFF4430	0.71	+0.6
4,425,568	+		GFF4430	0.71	+0.5
4,425,568	+		GFF4430	0.71	-0.7
4,425,568	+		GFF4430	0.71	+0.4
4,425,568	+		GFF4430	0.71	-1.6
4,425,568	+		GFF4430	0.71	+0.5
4,425,568	+		GFF4430	0.71	+0.6
4,425,571	-		GFF4430	0.71	-1.3
4,425,576	-		GFF4430	0.72	-1.7
4,425,576	-		GFF4430	0.72	-0.6
4,425,576	-		GFF4430	0.72	-0.1
4,425,576	-		GFF4430	0.72	-1.9
4,425,576	-		GFF4430	0.72	+0.2
4,425,576	-		GFF4430	0.72	-0.6
4,425,576	-		GFF4430	0.72	-0.3
4,425,576	-		GFF4430	0.72	+0.8
4,425,586	-		GFF4430	0.73	+1.3
4,425,627	+		GFF4430	0.77	+0.2
4,425,627	+		GFF4430	0.77	+0.0
4,425,627	+		GFF4430	0.77	+1.5
4,425,632	+		GFF4430	0.78	-0.2
4,425,632	+		GFF4430	0.78	-2.0
4,425,632	+		GFF4430	0.78	-1.6
4,425,640	-		GFF4430	0.78	+1.5
4,425,640	-		GFF4430	0.78	-1.3
4,425,660	+		GFF4430	0.81	+0.0
4,425,660	+		GFF4430	0.81	+0.1
4,425,660	+		GFF4430	0.81	-0.6
4,425,660	+		GFF4430	0.81	+0.7
4,425,660	+		GFF4430	0.81	-1.4
4,425,660	+		GFF4430	0.81	+0.7
4,425,663	-		GFF4430	0.81	-1.7
4,425,668	-		GFF4430	0.81	-0.6
4,425,668	-		GFF4430	0.81	+0.3
4,425,668	-		GFF4430	0.81	-0.6
4,425,668	-		GFF4430	0.81	-1.9
4,425,692	+		GFF4430	0.84	+0.8
4,425,692	+		GFF4430	0.84	-0.2
4,425,700	-		GFF4430	0.85	+0.6
4,425,700	-		GFF4430	0.85	+0.0
4,425,707	+		GFF4430	0.86	-1.8
4,425,707	+		GFF4430	0.86	-0.5
4,425,715	-		GFF4430	0.86	+0.3
4,425,719	+		GFF4430	0.87	-0.9
4,425,719	+		GFF4430	0.87	-1.8
4,425,727	-		GFF4430	0.88	+0.2
4,425,758	+				-0.6
4,425,786	-				+0.2
4,425,796	+				-0.9
4,425,796	+				-1.7
4,425,796	+				-1.7
4,425,796	+				+0.3
4,425,796	+				-0.3
4,425,796	+				-0.1
4,425,801	+				-1.9
4,425,801	+				+0.5
4,425,804	-				-1.3
4,425,804	-				-0.6
4,425,804	-				-0.0
4,425,804	-				-0.5
4,425,806	+				-0.1
4,425,806	+				-0.5
4,425,806	+				-2.0
4,425,806	+				-0.7
4,425,814	-				+0.2
4,425,814	-				-1.9
4,425,814	-				-0.8
4,425,814	-				-1.3
4,425,819	-				-0.0
4,425,834	-				-2.6
4,425,878	+				-1.6
4,425,878	+				+0.7
4,425,878	+				-0.6
4,425,892	+				+0.0
4,425,900	-		GFF4431	0.11	-0.1
4,425,907	+		GFF4431	0.13	-1.5
4,425,910	-		GFF4431	0.14	-1.4
4,425,912	+		GFF4431	0.14	-1.3
4,425,912	+		GFF4431	0.14	-0.8
4,425,917	+		GFF4431	0.15	-0.6
4,425,920	-		GFF4431	0.16	-0.5
4,425,920	-		GFF4431	0.16	-0.8
4,425,920	-		GFF4431	0.16	+1.0
4,425,925	-		GFF4431	0.17	+0.4
4,425,925	-		GFF4431	0.17	+0.2
4,425,925	-		GFF4431	0.17	+0.8
4,425,940	+		GFF4431	0.21	-0.4
4,425,940	+		GFF4431	0.21	-0.3
4,425,940	+		GFF4431	0.21	-2.2
4,425,948	-		GFF4431	0.23	-1.2
4,425,948	-		GFF4431	0.23	-1.7
4,425,969	+		GFF4431	0.28	-1.6
4,425,969	+		GFF4431	0.28	-2.3
4,425,977	-		GFF4431	0.30	-0.1
4,425,977	-		GFF4431	0.30	+1.4
4,425,977	-		GFF4431	0.30	+1.2
4,425,988	+		GFF4431	0.32	-1.9
4,425,990	+		GFF4431	0.33	+0.0
4,426,007	+		GFF4431	0.37	+1.0
4,426,007	+		GFF4431	0.37	-0.1
4,426,009	+		GFF4431	0.37	+1.6
4,426,017	-		GFF4431	0.39	+0.2
4,426,019	+		GFF4431	0.40	-0.5
4,426,019	+		GFF4431	0.40	-1.7
4,426,019	+		GFF4431	0.40	+0.7
4,426,019	+		GFF4431	0.40	+0.6
4,426,027	-		GFF4431	0.42	-0.1
4,426,032	-		GFF4431	0.43	-0.1
4,426,034	+		GFF4431	0.43	+0.4
4,426,062	+		GFF4431	0.50	-1.2
4,426,062	+		GFF4431	0.50	+0.4
4,426,068	+		GFF4431	0.51	-0.2
4,426,076	-		GFF4431	0.53	-1.3
4,426,088	+		GFF4431	0.56	+0.8
4,426,088	+		GFF4431	0.56	+0.0
4,426,096	-		GFF4431	0.58	+1.5
4,426,098	+		GFF4431	0.59	-0.3
4,426,103	+		GFF4431	0.60	-1.3
4,426,141	-		GFF4431	0.69	+0.7
4,426,144	+		GFF4431	0.70	-0.7
4,426,146	+		GFF4431	0.70	-0.5
4,426,147	-		GFF4431	0.70	-1.1
4,426,154	-		GFF4431	0.72	+0.9
4,426,155	+		GFF4431	0.72	-0.2
4,426,155	+		GFF4431	0.72	-0.3
4,426,155	+		GFF4431	0.72	-1.0
4,426,155	+		GFF4431	0.72	+0.1
4,426,155	-		GFF4431	0.72	-1.7
4,426,164	+		GFF4431	0.74	+0.3
4,426,165	-		GFF4431	0.75	+0.4
4,426,205	-		GFF4431	0.84	+0.1
4,426,207	-		GFF4431	0.85	-0.7
4,426,209	+		GFF4431	0.85	+0.4
4,426,209	+		GFF4431	0.85	-1.8
4,426,209	+		GFF4431	0.85	-0.6
4,426,209	+		GFF4431	0.85	-1.7
4,426,212	-		GFF4431	0.86	-0.6
4,426,217	-		GFF4431	0.87	-0.2
4,426,217	-		GFF4431	0.87	-1.3
4,426,224	+		GFF4431	0.89	-0.8
4,426,224	+		GFF4431	0.89	-2.4
4,426,224	+		GFF4431	0.89	+0.7
4,426,224	+		GFF4431	0.89	+0.2
4,426,232	-				+0.8
4,426,232	-				+0.0
4,426,238	-				-0.6
4,426,239	+				-2.4
4,426,239	+				-0.4
4,426,247	-				-0.6
4,426,247	-				-0.1
4,426,260	+				-0.7
4,426,260	+				-1.2
4,426,268	-				-0.9
4,426,276	+				-0.4
4,426,276	+				+0.2
4,426,276	+				-1.1
4,426,276	+				-0.9
4,426,276	+				-1.1
4,426,276	+				-0.6
4,426,284	-				+0.1
4,426,300	+				+1.0
4,426,305	+				+0.4
4,426,313	-				-1.5
4,426,339	+		GFF4432	0.11	-1.3
4,426,339	+		GFF4432	0.11	-0.8
4,426,339	+		GFF4432	0.11	-0.4
4,426,339	+		GFF4432	0.11	-0.3
4,426,347	-		GFF4432	0.12	+0.3
4,426,347	-		GFF4432	0.12	+0.2
4,426,351	+		GFF4432	0.12	-0.8
4,426,351	+		GFF4432	0.12	+0.7
4,426,373	+		GFF4432	0.16	-0.9
4,426,374	+		GFF4432	0.16	-0.3
4,426,376	-		GFF4432	0.16	-1.8
4,426,408	+		GFF4432	0.21	+0.2
4,426,412	-		GFF4432	0.22	-0.3
4,426,431	-		GFF4432	0.24	-2.1
4,426,451	+		GFF4432	0.27	-0.5
4,426,451	+		GFF4432	0.27	-0.1
4,426,451	+		GFF4432	0.27	-0.4
4,426,451	+		GFF4432	0.27	+0.5
4,426,451	+		GFF4432	0.27	-0.0
4,426,451	+		GFF4432	0.27	-1.6
4,426,451	+		GFF4432	0.27	-0.8
4,426,451	+		GFF4432	0.27	-1.1
4,426,451	+		GFF4432	0.27	-0.4
4,426,451	+		GFF4432	0.27	+0.3
4,426,451	+		GFF4432	0.27	-0.1
4,426,451	+		GFF4432	0.27	+0.5
4,426,451	+		GFF4432	0.27	-0.3
4,426,451	+		GFF4432	0.27	+0.2
4,426,451	+		GFF4432	0.27	+0.3
4,426,451	+		GFF4432	0.27	-0.6
4,426,459	-		GFF4432	0.29	-0.4
4,426,459	-		GFF4432	0.29	+0.1
4,426,459	-		GFF4432	0.29	-0.6
4,426,459	-		GFF4432	0.29	-1.3
4,426,459	-		GFF4432	0.29	+0.1
4,426,459	-		GFF4432	0.29	+1.2
4,426,459	-		GFF4432	0.29	+0.1
4,426,459	-		GFF4432	0.29	-0.1
4,426,477	+		GFF4432	0.31	+0.2
4,426,519	+		GFF4432	0.38	-0.3
4,426,519	+		GFF4432	0.38	-0.7
4,426,519	+		GFF4432	0.38	-1.9
4,426,526	-		GFF4432	0.39	+0.7
4,426,527	+		GFF4432	0.39	+0.5
4,426,527	+		GFF4432	0.39	-1.1
4,426,527	+		GFF4432	0.39	-1.5
4,426,527	+		GFF4432	0.39	-1.0
4,426,535	-		GFF4432	0.40	+0.8
4,426,563	-		GFF4432	0.44	-1.6
4,426,564	+		GFF4432	0.44	-0.7
4,426,582	+		GFF4432	0.47	+0.2
4,426,590	-		GFF4432	0.48	-0.7
4,426,590	-		GFF4432	0.48	+0.3
4,426,590	-		GFF4432	0.48	-0.5
4,426,590	-		GFF4432	0.48	+0.4
4,426,592	+		GFF4432	0.48	+0.4
4,426,595	-		GFF4432	0.49	+0.4
4,426,600	+		GFF4432	0.50	-0.8
4,426,600	-		GFF4432	0.50	-0.7
4,426,600	-		GFF4432	0.50	+0.3
4,426,610	+		GFF4432	0.51	-0.6
4,426,610	-		GFF4432	0.51	-1.6
4,426,613	-		GFF4432	0.52	-3.2
4,426,620	+		GFF4432	0.53	-1.5
4,426,622	+		GFF4432	0.53	-1.4
4,426,622	+		GFF4432	0.53	+0.3
4,426,622	+		GFF4432	0.53	-0.8
4,426,628	-		GFF4432	0.54	-0.6
4,426,630	-		GFF4432	0.54	-0.1
4,426,630	-		GFF4432	0.54	+0.7
4,426,630	-		GFF4432	0.54	-0.2
4,426,630	-		GFF4432	0.54	+1.2
4,426,634	+		GFF4432	0.55	-0.3
4,426,634	+		GFF4432	0.55	+0.0
4,426,634	+		GFF4432	0.55	+1.0
4,426,642	-		GFF4432	0.56	-0.0
4,426,648	+		GFF4432	0.57	-0.2
4,426,651	+		GFF4432	0.57	+0.2
4,426,664	-		GFF4432	0.59	-0.3
4,426,664	-		GFF4432	0.59	-2.0
4,426,666	+		GFF4432	0.59	+0.1
4,426,685	-		GFF4432	0.62	-0.2
4,426,696	+		GFF4432	0.64	-2.1
4,426,697	+		GFF4432	0.64	-0.7
4,426,702	+		GFF4432	0.65	-1.3
4,426,703	+		GFF4432	0.65	+0.2
4,426,703	+		GFF4432	0.65	-0.6
4,426,715	-		GFF4432	0.67	-0.3
4,426,729	-		GFF4432	0.69	+0.1
4,426,748	-		GFF4432	0.72	-2.7
4,426,782	-		GFF4432	0.77	+0.8
4,426,790	+		GFF4432	0.78	+0.2
4,426,790	+		GFF4432	0.78	+0.2
4,426,790	+		GFF4432	0.78	+0.4
4,426,790	+		GFF4432	0.78	-0.1
4,426,790	+		GFF4432	0.78	-1.9
4,426,790	+		GFF4432	0.78	-0.9
4,426,790	+		GFF4432	0.78	-0.4
4,426,790	+		GFF4432	0.78	+1.2
4,426,790	+		GFF4432	0.78	+1.0
4,426,798	-		GFF4432	0.79	-1.9
4,426,798	-		GFF4432	0.79	-0.8
4,426,798	-		GFF4432	0.79	+0.0
4,426,798	-		GFF4432	0.79	-0.7
4,426,798	-		GFF4432	0.79	-1.3
4,426,798	-		GFF4432	0.79	-1.2
4,426,798	-		GFF4432	0.79	-1.5
4,426,798	-		GFF4432	0.79	-1.2
4,426,852	+		GFF4432	0.87	-0.0
4,426,861	+		GFF4432	0.89	+0.3
4,426,861	+		GFF4432	0.89	-2.6
4,426,861	+		GFF4432	0.89	-0.5
4,426,861	+		GFF4432	0.89	-1.1
4,426,869	-		GFF4432	0.90	-1.3
4,426,869	-		GFF4432	0.90	-0.9
4,426,888	+				-0.2
4,426,917	+				+0.7
4,426,955	-				+0.2
4,426,966	+				-1.0
4,426,970	-				-1.3
4,426,970	-				+0.5
4,426,971	+				-0.9
4,426,971	+				+0.5
4,426,979	-				+0.3
4,427,044	-				-0.4
4,427,046	+				+0.5
4,427,073	+		GFF4433	0.12	+0.2
4,427,073	+		GFF4433	0.12	-1.3
4,427,073	+		GFF4433	0.12	-0.8
4,427,073	+		GFF4433	0.12	+0.5
4,427,073	+		GFF4433	0.12	-0.6
4,427,081	-		GFF4433	0.13	-0.2
4,427,081	-		GFF4433	0.13	-1.5
4,427,088	+		GFF4433	0.14	-0.7
4,427,095	-		GFF4433	0.15	-0.6
4,427,096	-		GFF4433	0.15	-0.8
4,427,096	-		GFF4433	0.15	-0.0
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4,427,304	+		GFF4433	0.36	-0.3
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4,427,373	+		GFF4433	0.44	+0.9
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4,427,373	+		GFF4433	0.44	-1.6
4,427,373	+		GFF4433	0.44	+0.8
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4,427,381	-		GFF4433	0.44	-1.7
4,427,381	-		GFF4433	0.44	-0.2
4,427,389	-		GFF4433	0.45	-0.8
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4,427,407	+		GFF4433	0.47	+0.7
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4,427,431	+		GFF4433	0.50	-1.8
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4,427,431	+		GFF4433	0.50	+0.6
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4,427,439	-		GFF4433	0.50	-2.3
4,427,439	-		GFF4433	0.50	-0.7
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4,427,474	+		GFF4433	0.54	+1.4
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4,427,482	-		GFF4433	0.55	-1.9
4,427,482	-		GFF4433	0.55	+0.0
4,427,482	-		GFF4433	0.55	+0.8
4,427,516	-		GFF4433	0.58	+0.2
4,427,529	+		GFF4433	0.60	+0.8
4,427,531	+		GFF4433	0.60	-0.4
4,427,535	+		GFF4433	0.60	-0.5
4,427,539	-		GFF4433	0.61	-0.0
4,427,539	-		GFF4433	0.61	-0.8
4,427,543	-		GFF4433	0.61	+0.0
4,427,557	-		GFF4433	0.63	-1.6
4,427,562	+		GFF4433	0.63	-2.1
4,427,565	-		GFF4433	0.64	-0.4
4,427,565	-		GFF4433	0.64	+0.4
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4,427,568	+		GFF4433	0.64	+1.6
4,427,568	+		GFF4433	0.64	-0.4
4,427,576	-		GFF4433	0.65	-1.1
4,427,578	+		GFF4433	0.65	+0.2
4,427,587	-		GFF4433	0.66	-0.3
4,427,591	-		GFF4433	0.66	+1.4
4,427,606	+		GFF4433	0.68	-0.7
4,427,614	-		GFF4433	0.69	+1.1
4,427,623	+		GFF4433	0.70	-1.3
4,427,639	+		GFF4433	0.71	-0.9
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4,427,766	-		GFF4433	0.84	-2.3
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4,427,788	-		GFF4433	0.87	+1.1
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4,427,802	+		GFF4433	0.88	-1.1
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4,427,812	+		GFF4433	0.89	-1.0
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4,427,848	-				-2.5
4,427,854	+				-1.6
4,427,862	-				-1.9
4,427,870	+				+0.1
4,427,870	+				+0.5
4,427,876	+				+0.5
4,427,878	-				-0.3
4,427,883	+				+0.3
4,427,883	+				+1.2
4,427,883	+				+0.8
4,427,883	+				-0.9
4,427,883	+				-2.6
4,427,883	+				+1.1
4,427,884	-				+1.6
4,427,884	-				-1.5
4,427,884	-				-2.3
4,427,891	-				+0.3
4,427,891	-				-2.1
4,427,908	+				-0.4
4,427,908	+				-0.8
4,427,911	-				+0.0
4,427,911	-				-0.1
4,427,913	+				+0.0
4,427,916	-				-0.2
4,427,916	-				-0.6
4,427,916	-				-0.7
4,427,916	-				+0.6
4,427,916	-				-0.3
4,427,923	+				+0.1
4,427,931	-				-1.1
4,427,931	-				-0.4
4,427,931	-				-0.5