Strain Fitness in Sphingobium sp. HT1-2 around GFF4027

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,047,249	-		GFF4025	0.85	-0.2
4,047,274	+				+0.8
4,047,284	+				-0.6
4,047,284	+				-0.8
4,047,292	-				-1.3
4,047,292	-				+0.9
4,047,310	+				-0.2
4,047,310	+				-0.1
4,047,312	+				-0.7
4,047,315	-				+0.5
4,047,318	-				+0.0
4,047,348	+				+0.5
4,047,355	+				+0.7
4,047,355	+				-0.4
4,047,355	+				+0.2
4,047,355	+				-1.9
4,047,357	-				-0.1
4,047,357	-				-0.5
4,047,360	+				-0.2
4,047,360	+				-0.6
4,047,360	+				-0.8
4,047,360	+				-0.3
4,047,363	-				-0.0
4,047,363	-				-0.1
4,047,368	-				-1.4
4,047,374	+				+0.3
4,047,375	-				+0.6
4,047,379	+				+0.5
4,047,382	-				-0.2
4,047,382	-				-2.1
4,047,382	-				-2.2
4,047,382	-				+0.1
4,047,382	-				-2.1
4,047,392	+				-1.1
4,047,392	+				+0.1
4,047,400	-		GFF4026	0.11	-1.1
4,047,400	-		GFF4026	0.11	+1.4
4,047,420	+		GFF4026	0.13	-0.5
4,047,437	-		GFF4026	0.15	-0.4
4,047,444	+		GFF4026	0.15	-2.2
4,047,444	+		GFF4026	0.15	-0.8
4,047,444	+		GFF4026	0.15	+0.2
4,047,452	-		GFF4026	0.16	-0.7
4,047,463	+		GFF4026	0.18	-1.7
4,047,463	+		GFF4026	0.18	+0.4
4,047,463	+		GFF4026	0.18	-1.0
4,047,463	-		GFF4026	0.18	-1.0
4,047,463	-		GFF4026	0.18	+0.9
4,047,463	-		GFF4026	0.18	-0.3
4,047,471	-		GFF4026	0.18	-0.2
4,047,471	-		GFF4026	0.18	+0.0
4,047,471	-		GFF4026	0.18	+0.1
4,047,471	-		GFF4026	0.18	+0.2
4,047,471	-		GFF4026	0.18	+0.4
4,047,471	-		GFF4026	0.18	+0.4
4,047,471	-		GFF4026	0.18	+1.4
4,047,471	-		GFF4026	0.18	+0.1
4,047,471	-		GFF4026	0.18	-0.9
4,047,473	-		GFF4026	0.19	-0.7
4,047,475	+		GFF4026	0.19	-0.2
4,047,475	+		GFF4026	0.19	-1.6
4,047,475	+		GFF4026	0.19	+0.8
4,047,475	+		GFF4026	0.19	-0.9
4,047,475	+		GFF4026	0.19	+1.2
4,047,483	-		GFF4026	0.20	-0.2
4,047,483	-		GFF4026	0.20	-0.6
4,047,483	-		GFF4026	0.20	+0.8
4,047,483	-		GFF4026	0.20	-0.2
4,047,485	+		GFF4026	0.20	-0.5
4,047,489	-		GFF4026	0.20	+1.3
4,047,516	-		GFF4026	0.23	-0.8
4,047,531	+		GFF4026	0.25	-0.6
4,047,537	-		GFF4026	0.25	-2.0
4,047,537	-		GFF4026	0.25	+0.6
4,047,539	-		GFF4026	0.26	-1.8
4,047,539	-		GFF4026	0.26	-0.4
4,047,544	-		GFF4026	0.26	+0.1
4,047,554	-		GFF4026	0.27	-0.3
4,047,554	-		GFF4026	0.27	+0.2
4,047,556	+		GFF4026	0.27	-0.5
4,047,561	-		GFF4026	0.28	-0.6
4,047,588	-		GFF4026	0.31	-0.3
4,047,609	-		GFF4026	0.33	-1.6
4,047,621	+		GFF4026	0.34	-0.4
4,047,621	+		GFF4026	0.34	+1.5
4,047,629	-		GFF4026	0.35	+1.1
4,047,631	+		GFF4026	0.35	-1.2
4,047,631	+		GFF4026	0.35	+0.2
4,047,639	-		GFF4026	0.36	+0.2
4,047,639	-		GFF4026	0.36	+0.9
4,047,639	-		GFF4026	0.36	-1.1
4,047,639	-		GFF4026	0.36	+0.8
4,047,651	-		GFF4026	0.38	+0.3
4,047,664	+		GFF4026	0.39	+0.2
4,047,664	+		GFF4026	0.39	-1.2
4,047,664	-		GFF4026	0.39	+0.7
4,047,672	-		GFF4026	0.40	-0.3
4,047,674	+		GFF4026	0.40	+0.3
4,047,674	+		GFF4026	0.40	-1.1
4,047,674	+		GFF4026	0.40	-0.4
4,047,674	+		GFF4026	0.40	+0.8
4,047,674	+		GFF4026	0.40	+0.1
4,047,674	+		GFF4026	0.40	-1.3
4,047,674	+		GFF4026	0.40	-1.3
4,047,674	+		GFF4026	0.40	-1.4
4,047,674	+		GFF4026	0.40	-0.5
4,047,674	+		GFF4026	0.40	-0.8
4,047,674	+		GFF4026	0.40	-0.5
4,047,674	+		GFF4026	0.40	+0.8
4,047,674	+		GFF4026	0.40	+1.4
4,047,674	+		GFF4026	0.40	-1.3
4,047,674	+		GFF4026	0.40	-0.9
4,047,674	+		GFF4026	0.40	+1.4
4,047,677	-		GFF4026	0.40	-0.2
4,047,681	+		GFF4026	0.41	-0.8
4,047,681	+		GFF4026	0.41	-0.3
4,047,681	+		GFF4026	0.41	-0.3
4,047,681	+		GFF4026	0.41	-1.4
4,047,681	+		GFF4026	0.41	-0.3
4,047,681	+		GFF4026	0.41	-0.6
4,047,681	+		GFF4026	0.41	+0.3
4,047,681	+		GFF4026	0.41	-0.2
4,047,681	+		GFF4026	0.41	+0.4
4,047,681	+		GFF4026	0.41	+0.3
4,047,681	+		GFF4026	0.41	+1.1
4,047,681	+		GFF4026	0.41	-2.0
4,047,681	+		GFF4026	0.41	+0.6
4,047,681	+		GFF4026	0.41	-0.3
4,047,681	+		GFF4026	0.41	-1.3
4,047,681	+		GFF4026	0.41	-1.8
4,047,681	+		GFF4026	0.41	-0.9
4,047,681	+		GFF4026	0.41	-0.3
4,047,681	+		GFF4026	0.41	-0.7
4,047,682	-		GFF4026	0.41	+0.1
4,047,682	-		GFF4026	0.41	+1.0
4,047,682	-		GFF4026	0.41	-1.2
4,047,682	-		GFF4026	0.41	-0.0
4,047,682	-		GFF4026	0.41	-0.4
4,047,682	-		GFF4026	0.41	+0.3
4,047,682	-		GFF4026	0.41	+0.8
4,047,682	-		GFF4026	0.41	-0.8
4,047,682	-		GFF4026	0.41	-0.2
4,047,682	-		GFF4026	0.41	-2.1
4,047,682	-		GFF4026	0.41	+0.9
4,047,682	-		GFF4026	0.41	+0.6
4,047,687	-		GFF4026	0.41	+0.6
4,047,689	-		GFF4026	0.42	-2.2
4,047,689	-		GFF4026	0.42	-0.2
4,047,689	-		GFF4026	0.42	-0.3
4,047,689	-		GFF4026	0.42	-1.2
4,047,689	-		GFF4026	0.42	+1.2
4,047,689	-		GFF4026	0.42	-1.7
4,047,689	-		GFF4026	0.42	-0.2
4,047,689	-		GFF4026	0.42	+0.3
4,047,689	-		GFF4026	0.42	-1.6
4,047,689	-		GFF4026	0.42	+1.0
4,047,689	-		GFF4026	0.42	+0.3
4,047,689	-		GFF4026	0.42	-1.2
4,047,689	-		GFF4026	0.42	-1.1
4,047,689	-		GFF4026	0.42	-2.5
4,047,691	+		GFF4026	0.42	-0.3
4,047,696	+		GFF4026	0.42	-1.5
4,047,701	+		GFF4026	0.43	+0.8
4,047,701	+		GFF4026	0.43	-0.6
4,047,701	+		GFF4026	0.43	-1.0
4,047,704	-		GFF4026	0.43	+0.8
4,047,706	+		GFF4026	0.43	+0.7
4,047,706	+		GFF4026	0.43	+0.2
4,047,706	+		GFF4026	0.43	-0.7
4,047,706	+		GFF4026	0.43	+1.1
4,047,706	+		GFF4026	0.43	-0.2
4,047,708	-		GFF4026	0.44	-1.3
4,047,709	-		GFF4026	0.44	-0.9
4,047,714	-		GFF4026	0.44	-1.7
4,047,714	-		GFF4026	0.44	-1.5
4,047,714	-		GFF4026	0.44	-0.6
4,047,719	-		GFF4026	0.45	+1.3
4,047,724	+		GFF4026	0.45	-2.3
4,047,732	-		GFF4026	0.46	-0.7
4,047,754	-		GFF4026	0.49	-2.2
4,047,754	-		GFF4026	0.49	+0.2
4,047,754	-		GFF4026	0.49	+0.9
4,047,767	+		GFF4026	0.50	+0.7
4,047,781	+		GFF4026	0.51	-1.6
4,047,781	+		GFF4026	0.51	-0.6
4,047,806	+		GFF4026	0.54	+0.5
4,047,806	+		GFF4026	0.54	-0.6
4,047,810	+		GFF4026	0.55	-1.8
4,047,813	-		GFF4026	0.55	-1.3
4,047,814	-		GFF4026	0.55	-0.6
4,047,814	-		GFF4026	0.55	+0.5
4,047,818	-		GFF4026	0.55	+2.0
4,047,825	-		GFF4026	0.56	-1.7
4,047,838	-		GFF4026	0.58	-0.4
4,047,843	-		GFF4026	0.58	-0.1
4,047,848	-		GFF4026	0.59	+0.7
4,047,848	-		GFF4026	0.59	+1.3
4,047,848	-		GFF4026	0.59	-0.4
4,047,851	-		GFF4026	0.59	+1.1
4,047,863	-		GFF4026	0.60	-0.3
4,047,870	-		GFF4026	0.61	-0.4
4,047,894	+		GFF4026	0.64	+0.2
4,047,901	-		GFF4026	0.64	+0.4
4,047,902	-		GFF4026	0.64	+0.2
4,047,910	+		GFF4026	0.65	-0.8
4,047,916	+		GFF4026	0.66	+0.6
4,047,940	+		GFF4026	0.68	-1.7
4,047,945	+		GFF4026	0.69	-0.4
4,047,948	-		GFF4026	0.69	+1.2
4,047,962	-		GFF4026	0.71	-0.9
4,047,964	+		GFF4026	0.71	-0.2
4,047,964	+		GFF4026	0.71	-0.7
4,047,964	+		GFF4026	0.71	-0.7
4,047,964	+		GFF4026	0.71	+1.1
4,047,964	+		GFF4026	0.71	+0.5
4,047,964	+		GFF4026	0.71	-0.3
4,047,964	+		GFF4026	0.71	+1.0
4,047,972	-		GFF4026	0.72	+0.4
4,047,972	-		GFF4026	0.72	+1.0
4,047,972	-		GFF4026	0.72	-1.2
4,047,972	-		GFF4026	0.72	-1.1
4,047,972	-		GFF4026	0.72	+1.3
4,047,972	-		GFF4026	0.72	+0.3
4,047,972	-		GFF4026	0.72	+0.7
4,047,972	-		GFF4026	0.72	+0.3
4,047,972	-		GFF4026	0.72	+0.2
4,047,972	-		GFF4026	0.72	-1.0
4,047,972	-		GFF4026	0.72	-0.7
4,047,972	-		GFF4026	0.72	-1.6
4,047,972	-		GFF4026	0.72	-0.6
4,047,972	-		GFF4026	0.72	-1.1
4,047,972	-		GFF4026	0.72	+0.9
4,047,972	-		GFF4026	0.72	+0.5
4,047,972	-		GFF4026	0.72	-1.2
4,047,972	-		GFF4026	0.72	-0.3
4,047,972	-		GFF4026	0.72	-0.1
4,047,975	-		GFF4026	0.72	-1.2
4,047,975	-		GFF4026	0.72	-0.2
4,047,975	-		GFF4026	0.72	-1.3
4,047,992	+		GFF4026	0.74	-0.4
4,047,995	-		GFF4026	0.74	-0.3
4,047,997	+		GFF4026	0.75	+1.0
4,047,997	+		GFF4026	0.75	-2.2
4,047,997	+		GFF4026	0.75	-1.4
4,048,002	+		GFF4026	0.75	-1.2
4,048,021	-		GFF4026	0.77	-0.2
4,048,021	-		GFF4026	0.77	-0.2
4,048,049	-		GFF4026	0.80	+0.7
4,048,075	+		GFF4026	0.83	+0.5
4,048,096	-		GFF4026	0.85	+0.1
4,048,111	+		GFF4026	0.87	+0.4
4,048,111	+		GFF4026	0.87	-2.0
4,048,111	+		GFF4026	0.87	+0.4
4,048,119	-		GFF4026	0.88	-1.0
4,048,119	-		GFF4026	0.88	-1.4
4,048,119	-		GFF4026	0.88	-0.5
4,048,119	-		GFF4026	0.88	+0.1
4,048,119	-		GFF4026	0.88	-0.2
4,048,119	-		GFF4026	0.88	+0.0
4,048,119	-		GFF4026	0.88	-1.1
4,048,119	-		GFF4026	0.88	+0.1
4,048,119	-		GFF4026	0.88	-0.3
4,048,119	-		GFF4026	0.88	-0.2
4,048,133	+		GFF4026	0.89	+0.5
4,048,133	+		GFF4026	0.89	-0.2
4,048,133	+		GFF4026	0.89	+0.5
4,048,133	+		GFF4026	0.89	-1.2
4,048,136	-		GFF4026	0.89	+0.8
4,048,141	-				+0.2
4,048,141	-				+1.2
4,048,141	-				-1.2
4,048,141	-				+0.4
4,048,141	-				+0.1
4,048,141	-				-1.3
4,048,141	-				+0.9
4,048,141	-				+0.1
4,048,141	-				+0.5
4,048,165	+				-0.0
4,048,173	-				+0.2
4,048,188	-				+0.4
4,048,227	+				-1.9
4,048,237	+				+1.1
4,048,244	+				-2.0
4,048,244	+				-0.2
4,048,244	+				-0.8
4,048,247	-				-0.7
4,048,250	+				+1.0
4,048,251	+				+0.2
4,048,252	-				-0.0
4,048,295	-				-0.5
4,048,300	+				+0.4
4,048,300	+				+0.8
4,048,312	+				-1.5
4,048,316	-				-0.3
4,048,316	-				+0.7
4,048,318	+		GFF4027	0.10	-0.6
4,048,318	+		GFF4027	0.10	-0.8
4,048,318	+		GFF4027	0.10	-0.1
4,048,318	+		GFF4027	0.10	-0.2
4,048,318	+		GFF4027	0.10	+0.8
4,048,318	+		GFF4027	0.10	-1.1
4,048,318	+		GFF4027	0.10	-1.4
4,048,318	+		GFF4027	0.10	+0.5
4,048,321	-		GFF4027	0.10	+0.8
4,048,325	+		GFF4027	0.11	+1.8
4,048,326	-		GFF4027	0.11	-0.8
4,048,326	-		GFF4027	0.11	-2.0
4,048,326	-		GFF4027	0.11	-0.4
4,048,326	-		GFF4027	0.11	-0.1
4,048,326	-		GFF4027	0.11	+1.0
4,048,326	-		GFF4027	0.11	-1.3
4,048,336	-		GFF4027	0.13	-1.2
4,048,336	-		GFF4027	0.13	+1.4
4,048,351	+		GFF4027	0.15	+0.3
4,048,390	+		GFF4027	0.20	+0.8
4,048,390	+		GFF4027	0.20	-0.1
4,048,391	+		GFF4027	0.20	-0.1
4,048,409	-		GFF4027	0.23	-1.0
4,048,414	+		GFF4027	0.24	+0.9
4,048,420	+		GFF4027	0.25	-1.0
4,048,420	-		GFF4027	0.25	-1.1
4,048,420	-		GFF4027	0.25	-0.4
4,048,420	-		GFF4027	0.25	+0.2
4,048,422	-		GFF4027	0.25	-0.3
4,048,422	-		GFF4027	0.25	-0.2
4,048,427	-		GFF4027	0.26	+0.3
4,048,436	-		GFF4027	0.27	-0.3
4,048,449	+		GFF4027	0.29	-0.5
4,048,459	+		GFF4027	0.30	-0.8
4,048,467	-		GFF4027	0.31	-0.1
4,048,467	-		GFF4027	0.31	-1.4
4,048,467	-		GFF4027	0.31	-0.6
4,048,468	-		GFF4027	0.31	+1.3
4,048,473	+		GFF4027	0.32	-1.3
4,048,523	+		GFF4027	0.39	+0.5
4,048,528	+		GFF4027	0.40	-1.7
4,048,528	+		GFF4027	0.40	-0.5
4,048,528	+		GFF4027	0.40	+0.4
4,048,528	+		GFF4027	0.40	+0.5
4,048,528	+		GFF4027	0.40	+0.1
4,048,528	+		GFF4027	0.40	-1.2
4,048,547	-		GFF4027	0.43	-0.1
4,048,559	-		GFF4027	0.44	-0.4
4,048,573	+		GFF4027	0.46	+0.4
4,048,573	+		GFF4027	0.46	-1.8
4,048,573	+		GFF4027	0.46	+0.5
4,048,573	+		GFF4027	0.46	+0.9
4,048,573	+		GFF4027	0.46	-0.7
4,048,573	+		GFF4027	0.46	-0.3
4,048,573	+		GFF4027	0.46	-0.6
4,048,573	+		GFF4027	0.46	-1.0
4,048,573	+		GFF4027	0.46	-0.5
4,048,573	+		GFF4027	0.46	-0.2
4,048,573	+		GFF4027	0.46	+0.1
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4,048,581	-		GFF4027	0.47	-1.3
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4,048,848	-		GFF4027	0.85	-2.0
4,048,848	-		GFF4027	0.85	-1.9
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4,048,848	-		GFF4027	0.85	-0.8
4,048,848	-		GFF4027	0.85	-1.2
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4,048,889	+				-0.8
4,048,889	+				-1.5
4,048,897	-				+1.2
4,048,899	+				-0.0
4,048,920	-				-1.6
4,048,928	+				+0.0
4,048,931	-				+0.0
4,048,933	+				-1.4
4,048,936	-				+0.6
4,048,936	-				+1.0
4,048,936	-				-0.8
4,048,945	+				-0.1
4,048,956	+				+0.4
4,048,956	+				-0.2
4,048,961	+				+0.3
4,048,961	+				-0.8
4,048,961	+				+0.7
4,048,961	+				+0.8
4,048,961	+				+0.4
4,048,961	+				-0.9
4,048,961	+				+0.9
4,048,961	+				+0.5
4,048,961	+				-1.3
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4,048,961	+				+1.3
4,048,961	+				-0.5
4,048,961	+				-1.3
4,048,961	+				-1.1
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4,048,961	+				+0.8
4,048,961	+				-1.8
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4,048,964	-				+0.2
4,048,964	-				-0.7
4,048,969	-				-0.6
4,048,969	-				-0.8
4,048,969	-				+0.1
4,048,969	-				+0.1
4,048,969	-				-0.7
4,048,969	-				+0.3
4,048,969	-				+0.8
4,048,969	-				-1.7
4,048,969	-				-0.3
4,048,969	-				-0.4
4,048,969	-				-0.9
4,048,969	-				-1.1
4,048,969	-				-0.3
4,048,969	-				-1.9
4,048,969	-				-0.9
4,048,969	-				-1.0
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4,048,969	-				-0.5
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4,049,020	+				-0.2
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4,049,044	+				+0.4
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