Strain Fitness in Sphingobium sp. HT1-2 around GFF3957

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,998,045	-		GFF3956	0.53	-0.5
3,998,046	+		GFF3956	0.53	-0.6
3,998,053	+		GFF3956	0.53	-1.6
3,998,054	-		GFF3956	0.53	+0.6
3,998,066	-		GFF3956	0.54	-0.3
3,998,070	+		GFF3956	0.54	+0.8
3,998,070	+		GFF3956	0.54	-0.7
3,998,077	+		GFF3956	0.54	-0.5
3,998,077	+		GFF3956	0.54	+0.4
3,998,077	+		GFF3956	0.54	+1.0
3,998,085	-		GFF3956	0.55	-1.5
3,998,085	-		GFF3956	0.55	+0.0
3,998,101	+		GFF3956	0.56	-0.6
3,998,106	-		GFF3956	0.56	-0.4
3,998,109	-		GFF3956	0.56	-1.6
3,998,111	+		GFF3956	0.56	-1.9
3,998,111	+		GFF3956	0.56	+0.1
3,998,113	-		GFF3956	0.56	-0.3
3,998,119	-		GFF3956	0.56	-1.7
3,998,128	+		GFF3956	0.57	-1.6
3,998,140	-		GFF3956	0.57	-0.7
3,998,145	+		GFF3956	0.58	-0.3
3,998,153	-		GFF3956	0.58	+0.5
3,998,157	+		GFF3956	0.58	-0.1
3,998,171	+		GFF3956	0.59	-0.2
3,998,179	-		GFF3956	0.59	-0.2
3,998,204	+		GFF3956	0.60	-1.0
3,998,205	+		GFF3956	0.60	-0.3
3,998,212	-		GFF3956	0.61	-0.6
3,998,233	+		GFF3956	0.62	-0.5
3,998,233	+		GFF3956	0.62	+0.2
3,998,236	-		GFF3956	0.62	-0.9
3,998,241	-		GFF3956	0.62	+1.2
3,998,241	-		GFF3956	0.62	-0.8
3,998,241	-		GFF3956	0.62	+0.4
3,998,241	-		GFF3956	0.62	-0.1
3,998,241	-		GFF3956	0.62	+0.0
3,998,241	-		GFF3956	0.62	-0.3
3,998,241	-		GFF3956	0.62	-0.1
3,998,241	-		GFF3956	0.62	-0.3
3,998,241	-		GFF3956	0.62	-1.1
3,998,241	-		GFF3956	0.62	-1.1
3,998,249	+		GFF3956	0.63	+0.4
3,998,251	-		GFF3956	0.63	-1.1
3,998,257	-		GFF3956	0.63	+1.1
3,998,267	+		GFF3956	0.63	-1.5
3,998,270	+		GFF3956	0.64	-0.1
3,998,270	+		GFF3956	0.64	+0.4
3,998,270	-		GFF3956	0.64	-0.8
3,998,276	-		GFF3956	0.64	-0.2
3,998,278	-		GFF3956	0.64	-0.5
3,998,278	-		GFF3956	0.64	-0.7
3,998,278	-		GFF3956	0.64	-0.9
3,998,278	-		GFF3956	0.64	+0.3
3,998,281	-		GFF3956	0.64	+0.2
3,998,288	+		GFF3956	0.64	-0.4
3,998,288	+		GFF3956	0.64	-1.5
3,998,288	+		GFF3956	0.64	-1.4
3,998,288	+		GFF3956	0.64	+0.7
3,998,288	+		GFF3956	0.64	+1.4
3,998,288	+		GFF3956	0.64	+0.4
3,998,288	+		GFF3956	0.64	-0.7
3,998,288	+		GFF3956	0.64	-0.3
3,998,296	-		GFF3956	0.65	+0.3
3,998,296	-		GFF3956	0.65	+0.8
3,998,296	-		GFF3956	0.65	+0.5
3,998,296	-		GFF3956	0.65	-1.2
3,998,296	-		GFF3956	0.65	-0.9
3,998,296	-		GFF3956	0.65	-1.4
3,998,296	-		GFF3956	0.65	-0.3
3,998,296	-		GFF3956	0.65	+0.1
3,998,296	-		GFF3956	0.65	+0.2
3,998,296	-		GFF3956	0.65	-0.2
3,998,296	-		GFF3956	0.65	-2.8
3,998,296	-		GFF3956	0.65	+0.5
3,998,296	-		GFF3956	0.65	+0.8
3,998,296	-		GFF3956	0.65	+0.8
3,998,347	-		GFF3956	0.67	-0.6
3,998,371	+		GFF3956	0.68	+1.1
3,998,372	+		GFF3956	0.68	+0.3
3,998,376	+		GFF3956	0.69	-0.2
3,998,400	+		GFF3956	0.70	+0.4
3,998,410	+		GFF3956	0.70	-0.7
3,998,416	+		GFF3956	0.70	-0.3
3,998,417	+		GFF3956	0.70	+0.0
3,998,418	-		GFF3956	0.71	-0.2
3,998,425	-		GFF3956	0.71	-0.0
3,998,433	-		GFF3956	0.71	-1.5
3,998,436	-		GFF3956	0.71	+0.0
3,998,436	-		GFF3956	0.71	-0.1
3,998,436	-		GFF3956	0.71	-0.1
3,998,436	-		GFF3956	0.71	-0.8
3,998,436	-		GFF3956	0.71	+0.6
3,998,467	+		GFF3956	0.73	+0.0
3,998,478	+		GFF3956	0.73	+0.2
3,998,478	+		GFF3956	0.73	+1.0
3,998,482	+		GFF3956	0.74	+0.4
3,998,483	+		GFF3956	0.74	+1.6
3,998,486	+		GFF3956	0.74	+0.2
3,998,486	-		GFF3956	0.74	+0.2
3,998,486	-		GFF3956	0.74	-0.0
3,998,486	-		GFF3956	0.74	+0.1
3,998,486	-		GFF3956	0.74	+0.6
3,998,513	+		GFF3956	0.75	-0.6
3,998,517	-		GFF3956	0.75	-0.4
3,998,517	-		GFF3956	0.75	+0.2
3,998,528	+		GFF3956	0.76	-0.0
3,998,538	+		GFF3956	0.76	-0.8
3,998,540	+		GFF3956	0.76	+0.0
3,998,545	+		GFF3956	0.77	+1.1
3,998,545	+		GFF3956	0.77	+0.0
3,998,545	+		GFF3956	0.77	-2.7
3,998,545	+		GFF3956	0.77	+1.2
3,998,546	-		GFF3956	0.77	-0.0
3,998,553	-		GFF3956	0.77	+0.5
3,998,553	-		GFF3956	0.77	-1.2
3,998,553	-		GFF3956	0.77	-0.7
3,998,558	-		GFF3956	0.77	+0.0
3,998,558	-		GFF3956	0.77	+1.7
3,998,560	+		GFF3956	0.77	-0.7
3,998,560	+		GFF3956	0.77	-0.6
3,998,568	-		GFF3956	0.78	-0.3
3,998,603	-		GFF3956	0.79	+0.3
3,998,623	+		GFF3956	0.80	-0.5
3,998,626	-		GFF3956	0.80	-0.4
3,998,631	-		GFF3956	0.81	+0.3
3,998,654	+		GFF3956	0.82	+0.4
3,998,654	+		GFF3956	0.82	-0.0
3,998,662	-		GFF3956	0.82	-0.6
3,998,662	-		GFF3956	0.82	+1.7
3,998,662	-		GFF3956	0.82	-0.3
3,998,662	-		GFF3956	0.82	-1.9
3,998,669	-		GFF3956	0.82	+0.6
3,998,701	+		GFF3956	0.84	-0.2
3,998,709	-		GFF3956	0.84	-0.1
3,998,709	-		GFF3956	0.84	-1.5
3,998,714	+		GFF3956	0.85	+0.2
3,998,722	-		GFF3956	0.85	-0.6
3,998,724	+		GFF3956	0.85	-1.0
3,998,732	-		GFF3956	0.85	+0.6
3,998,733	-		GFF3956	0.85	-0.1
3,998,733	-		GFF3956	0.85	-0.6
3,998,735	+		GFF3956	0.86	-2.6
3,998,737	-		GFF3956	0.86	+1.2
3,998,740	+		GFF3956	0.86	+1.0
3,998,751	+		GFF3956	0.86	+1.1
3,998,784	-		GFF3956	0.88	+1.4
3,998,816	-		GFF3956	0.89	-1.9
3,998,835	-				+0.6
3,998,835	-				-0.2
3,998,835	-				-0.7
3,998,835	-				+0.2
3,998,865	-				+0.6
3,998,870	+				-0.5
3,998,872	+				+0.8
3,998,891	+				-0.3
3,998,892	+				+0.4
3,998,892	+				+0.6
3,998,895	-				-0.2
3,998,899	-				+0.5
3,998,899	-				-2.3
3,998,931	+				-1.4
3,998,955	+				-0.9
3,998,973	-				+0.1
3,998,973	-				-0.5
3,998,973	-				+0.7
3,998,973	-				+1.3
3,998,973	-				+0.8
3,998,991	+				-0.5
3,998,992	-				-0.2
3,999,011	-				+0.2
3,999,015	+				+0.3
3,999,031	-				+1.2
3,999,033	-				+0.3
3,999,037	+				-0.1
3,999,038	-				+1.2
3,999,053	+				-0.8
3,999,072	-				+1.0
3,999,098	+				+0.7
3,999,105	+				+0.6
3,999,106	-				-1.0
3,999,117	-		GFF3957	0.10	+0.7
3,999,123	-		GFF3957	0.11	-0.2
3,999,146	-		GFF3957	0.14	-0.1
3,999,176	+		GFF3957	0.18	-1.7
3,999,176	+		GFF3957	0.18	+0.4
3,999,176	+		GFF3957	0.18	-0.5
3,999,181	+		GFF3957	0.18	-1.0
3,999,181	+		GFF3957	0.18	-1.7
3,999,181	+		GFF3957	0.18	+1.0
3,999,181	+		GFF3957	0.18	+0.0
3,999,181	+		GFF3957	0.18	+0.9
3,999,182	+		GFF3957	0.18	-0.5
3,999,184	-		GFF3957	0.19	-1.4
3,999,184	-		GFF3957	0.19	+0.0
3,999,184	-		GFF3957	0.19	-2.0
3,999,184	-		GFF3957	0.19	-0.9
3,999,184	-		GFF3957	0.19	+0.3
3,999,186	+		GFF3957	0.19	-0.4
3,999,189	-		GFF3957	0.19	+0.6
3,999,190	-		GFF3957	0.19	-0.6
3,999,193	+		GFF3957	0.20	+0.1
3,999,194	-		GFF3957	0.20	-2.2
3,999,194	-		GFF3957	0.20	-0.7
3,999,208	-		GFF3957	0.22	-0.8
3,999,208	-		GFF3957	0.22	-1.6
3,999,215	+		GFF3957	0.23	+0.4
3,999,215	-		GFF3957	0.23	-1.2
3,999,234	+		GFF3957	0.25	+0.1
3,999,245	+		GFF3957	0.26	+0.2
3,999,250	-		GFF3957	0.27	+0.9
3,999,250	-		GFF3957	0.27	+0.6
3,999,280	+		GFF3957	0.31	+0.4
3,999,293	+		GFF3957	0.32	-1.5
3,999,317	-		GFF3957	0.35	+0.5
3,999,347	-		GFF3957	0.39	-1.5
3,999,400	+		GFF3957	0.46	+1.1
3,999,401	+		GFF3957	0.46	-1.9
3,999,407	-		GFF3957	0.47	-0.7
3,999,407	-		GFF3957	0.47	+0.8
3,999,407	-		GFF3957	0.47	-0.0
3,999,408	-		GFF3957	0.47	+1.1
3,999,443	+		GFF3957	0.52	+0.1
3,999,451	-		GFF3957	0.53	-0.4
3,999,451	-		GFF3957	0.53	+0.3
3,999,456	-		GFF3957	0.53	+1.6
3,999,456	-		GFF3957	0.53	-0.3
3,999,485	+		GFF3957	0.57	-0.2
3,999,503	-		GFF3957	0.59	-1.2
3,999,503	-		GFF3957	0.59	-0.6
3,999,503	-		GFF3957	0.59	-1.6
3,999,503	-		GFF3957	0.59	-1.2
3,999,505	+		GFF3957	0.59	-0.4
3,999,505	+		GFF3957	0.59	+1.1
3,999,511	+		GFF3957	0.60	-0.8
3,999,513	-		GFF3957	0.60	-1.7
3,999,513	-		GFF3957	0.60	-0.8
3,999,537	-		GFF3957	0.63	-0.2
3,999,566	+		GFF3957	0.67	-0.7
3,999,600	+		GFF3957	0.72	+0.1
3,999,601	+		GFF3957	0.72	-0.5
3,999,617	+		GFF3957	0.74	-0.2
3,999,629	-		GFF3957	0.75	-1.1
3,999,667	+		GFF3957	0.80	+0.3
3,999,809	+				-2.1
3,999,810	-				-1.1
3,999,819	+				+0.4
3,999,840	+				+0.0
3,999,858	+				-1.6
3,999,875	+		GFF3958	0.12	+0.0
3,999,910	-		GFF3958	0.19	+0.1
3,999,911	+		GFF3958	0.20	+0.6
3,999,912	+		GFF3958	0.20	-0.7
3,999,912	+		GFF3958	0.20	+0.4
3,999,912	+		GFF3958	0.20	-1.1
3,999,912	+		GFF3958	0.20	+0.6
3,999,912	+		GFF3958	0.20	+0.4
3,999,920	-		GFF3958	0.22	-0.5
3,999,921	+		GFF3958	0.22	+0.3
3,999,924	-		GFF3958	0.23	-1.0
3,999,924	-		GFF3958	0.23	+1.4
3,999,933	-		GFF3958	0.24	-1.1
3,999,933	-		GFF3958	0.24	+0.6
3,999,933	-		GFF3958	0.24	+1.5
3,999,951	+		GFF3958	0.28	+0.6
3,999,960	-		GFF3958	0.30	-1.6
3,999,962	+		GFF3958	0.31	-0.1
3,999,965	-		GFF3958	0.31	+0.0
3,999,974	+		GFF3958	0.33	-0.9
3,999,974	+		GFF3958	0.33	-1.5
3,999,977	-		GFF3958	0.34	+0.4
3,999,977	-		GFF3958	0.34	+1.5
3,999,993	+		GFF3958	0.37	+0.7
4,000,000	+		GFF3958	0.39	+0.2
4,000,001	-		GFF3958	0.39	-2.2
4,000,008	-		GFF3958	0.41	-0.3
4,000,008	-		GFF3958	0.41	+0.7
4,000,012	-		GFF3958	0.42	-1.0
4,000,012	-		GFF3958	0.42	-0.1
4,000,017	+		GFF3958	0.43	-2.7
4,000,017	+		GFF3958	0.43	+1.0
4,000,018	-		GFF3958	0.43	+0.3
4,000,019	+		GFF3958	0.43	+0.3
4,000,025	+		GFF3958	0.44	+0.6
4,000,025	-		GFF3958	0.44	-1.4
4,000,025	-		GFF3958	0.44	+0.2
4,000,025	-		GFF3958	0.44	-0.4
4,000,033	+		GFF3958	0.46	-1.0
4,000,041	-		GFF3958	0.48	+0.5
4,000,043	+		GFF3958	0.48	-1.3
4,000,051	+		GFF3958	0.50	-0.5
4,000,051	-		GFF3958	0.50	+0.6
4,000,052	+		GFF3958	0.50	-0.3
4,000,052	+		GFF3958	0.50	-0.9
4,000,059	-		GFF3958	0.52	-1.4
4,000,059	-		GFF3958	0.52	-1.3
4,000,069	+		GFF3958	0.54	-0.9
4,000,069	+		GFF3958	0.54	-0.3
4,000,069	+		GFF3958	0.54	-2.5
4,000,069	+		GFF3958	0.54	-1.5
4,000,077	-		GFF3958	0.56	-0.7
4,000,077	-		GFF3958	0.56	+0.1
4,000,077	-		GFF3958	0.56	-1.3
4,000,089	-		GFF3958	0.58	-0.4
4,000,102	+		GFF3958	0.61	+1.2
4,000,104	-		GFF3958	0.61	-1.1
4,000,109	-		GFF3958	0.63	-0.5
4,000,147	+		GFF3958	0.71	+0.1
4,000,152	+		GFF3958	0.72	+0.6
4,000,152	+		GFF3958	0.72	-1.5
4,000,152	+		GFF3958	0.72	-1.2
4,000,160	-		GFF3958	0.74	+0.7
4,000,160	-		GFF3958	0.74	-1.2
4,000,160	-		GFF3958	0.74	-0.5
4,000,160	-		GFF3958	0.74	-1.0
4,000,160	-		GFF3958	0.74	-0.6
4,000,160	-		GFF3958	0.74	-0.5
4,000,160	-		GFF3958	0.74	-1.6
4,000,160	-		GFF3958	0.74	+1.3
4,000,182	+		GFF3958	0.78	+0.5
4,000,182	+		GFF3958	0.78	-0.4
4,000,182	+		GFF3958	0.78	-0.1
4,000,190	-		GFF3958	0.80	+0.4
4,000,190	-		GFF3958	0.80	-0.3
4,000,190	-		GFF3958	0.80	-0.0
4,000,200	+		GFF3958	0.82	+1.2
4,000,228	+		GFF3958	0.88	+1.0
4,000,236	-				-0.6
4,000,241	+				+1.0
4,000,241	+				+0.6
4,000,245	+				-0.1
4,000,254	+				-1.1
4,000,254	-				-1.1
4,000,254	-				-0.3
4,000,260	+				+0.1
4,000,264	+				-1.5
4,000,264	+				+0.4
4,000,264	+				+0.9
4,000,264	-				+0.5
4,000,272	-				+0.6
4,000,274	-				-1.0
4,000,279	-				-0.1
4,000,292	+				+0.0
4,000,309	+				-0.2
4,000,310	+				-0.6
4,000,312	+				-0.4
4,000,312	+				+0.2
4,000,312	+				-0.3
4,000,317	+				-0.5
4,000,317	+				-1.3
4,000,318	-				+0.9
4,000,320	-				-0.7
4,000,320	-				-0.7
4,000,320	-				-0.6
4,000,320	-				+0.2
4,000,320	-				-0.1
4,000,320	-				-0.4
4,000,320	-				-0.5
4,000,320	-				+0.6
4,000,320	-				-0.1
4,000,320	-				-0.3
4,000,322	+				+0.6
4,000,322	+				+0.8
4,000,322	+				-0.3
4,000,325	-				-2.3
4,000,325	-				+0.4
4,000,338	-		GFF3959	0.12	+0.3
4,000,339	-		GFF3959	0.12	-0.5
4,000,361	-		GFF3959	0.17	-0.2
4,000,379	+		GFF3959	0.20	-1.2
4,000,387	-		GFF3959	0.22	+0.2
4,000,392	-		GFF3959	0.23	-3.1
4,000,400	+		GFF3959	0.24	-0.4
4,000,400	+		GFF3959	0.24	+0.1
4,000,408	+		GFF3959	0.26	-1.5
4,000,412	-		GFF3959	0.27	-0.0
4,000,415	+		GFF3959	0.28	-1.0
4,000,423	+		GFF3959	0.29	-0.6
4,000,423	-		GFF3959	0.29	-0.0
4,000,425	+		GFF3959	0.30	+0.3
4,000,431	-		GFF3959	0.31	-0.3
4,000,431	-		GFF3959	0.31	+0.9
4,000,454	+		GFF3959	0.35	-0.3
4,000,454	+		GFF3959	0.35	+0.8
4,000,454	+		GFF3959	0.35	-0.7
4,000,454	+		GFF3959	0.35	-0.6
4,000,454	+		GFF3959	0.35	-0.7
4,000,454	+		GFF3959	0.35	+1.2
4,000,454	+		GFF3959	0.35	-0.4
4,000,454	+		GFF3959	0.35	+0.9
4,000,454	+		GFF3959	0.35	+0.5
4,000,455	-		GFF3959	0.36	+0.8
4,000,455	-		GFF3959	0.36	+1.1
4,000,462	-		GFF3959	0.37	-0.3
4,000,501	+		GFF3959	0.45	-0.7
4,000,509	-		GFF3959	0.46	-1.2
4,000,509	-		GFF3959	0.46	-0.2
4,000,510	-		GFF3959	0.47	+0.8
4,000,513	+		GFF3959	0.47	+0.6
4,000,524	-		GFF3959	0.49	-2.2
4,000,549	+		GFF3959	0.54	+1.2
4,000,549	+		GFF3959	0.54	-2.5
4,000,549	+		GFF3959	0.54	+0.2
4,000,549	+		GFF3959	0.54	-0.4
4,000,549	+		GFF3959	0.54	+1.3
4,000,551	+		GFF3959	0.55	+0.4
4,000,557	-		GFF3959	0.56	+0.5
4,000,557	-		GFF3959	0.56	+0.3
4,000,557	-		GFF3959	0.56	-1.1
4,000,557	-		GFF3959	0.56	+0.2
4,000,557	-		GFF3959	0.56	-0.3
4,000,572	+		GFF3959	0.59	-0.2
4,000,572	+		GFF3959	0.59	-1.2
4,000,578	+		GFF3959	0.60	-1.8
4,000,591	+		GFF3959	0.63	+1.9
4,000,591	+		GFF3959	0.63	+0.5
4,000,591	+		GFF3959	0.63	-0.8
4,000,612	+		GFF3959	0.67	-1.2
4,000,617	+		GFF3959	0.68	+0.1
4,000,639	+		GFF3959	0.72	+0.8
4,000,647	-		GFF3959	0.74	-1.2
4,000,685	+		GFF3959	0.82	-0.0
4,000,685	+		GFF3959	0.82	+0.1
4,000,708	-		GFF3959	0.86	+0.8
4,000,708	-		GFF3959	0.86	+0.0
4,000,730	+				-0.2
4,000,738	-				+0.3
4,000,738	-				-0.6
4,000,738	-				+0.8
4,000,738	-				-0.7
4,000,755	+				+0.8
4,000,779	+				-0.9
4,000,795	-				-1.6
4,000,804	+				-1.0
4,000,809	+				-0.2
4,000,817	+				-0.3