Strain Fitness in Sphingobium sp. HT1-2 around GFF3285

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,338,318	-		GFF3284	0.16	-1.5
3,338,330	-		GFF3284	0.17	-1.0
3,338,366	-		GFF3284	0.20	-0.5
3,338,371	+		GFF3284	0.20	+0.5
3,338,371	+		GFF3284	0.20	-3.0
3,338,379	-		GFF3284	0.21	-1.2
3,338,379	-		GFF3284	0.21	-0.4
3,338,379	-		GFF3284	0.21	-0.0
3,338,402	+		GFF3284	0.23	-2.0
3,338,402	+		GFF3284	0.23	-1.4
3,338,410	+		GFF3284	0.24	-0.7
3,338,427	+		GFF3284	0.25	+0.4
3,338,427	+		GFF3284	0.25	-1.2
3,338,427	+		GFF3284	0.25	-0.1
3,338,427	+		GFF3284	0.25	-0.0
3,338,427	+		GFF3284	0.25	+0.1
3,338,428	-		GFF3284	0.25	-0.5
3,338,435	-		GFF3284	0.26	-0.1
3,338,435	-		GFF3284	0.26	+0.3
3,338,446	+		GFF3284	0.27	+1.3
3,338,446	+		GFF3284	0.27	+0.6
3,338,446	+		GFF3284	0.27	-2.0
3,338,454	-		GFF3284	0.27	+0.4
3,338,475	-		GFF3284	0.29	+0.0
3,338,491	+		GFF3284	0.30	-0.1
3,338,491	+		GFF3284	0.30	-3.2
3,338,491	+		GFF3284	0.30	-0.4
3,338,491	+		GFF3284	0.30	-0.6
3,338,491	+		GFF3284	0.30	-0.4
3,338,491	+		GFF3284	0.30	-0.4
3,338,491	+		GFF3284	0.30	-0.2
3,338,491	+		GFF3284	0.30	-1.0
3,338,491	+		GFF3284	0.30	+0.7
3,338,491	+		GFF3284	0.30	+0.7
3,338,491	+		GFF3284	0.30	-1.9
3,338,491	+		GFF3284	0.30	+0.5
3,338,491	+		GFF3284	0.30	-0.2
3,338,491	+		GFF3284	0.30	+0.2
3,338,499	-		GFF3284	0.31	-0.1
3,338,499	-		GFF3284	0.31	+0.5
3,338,499	-		GFF3284	0.31	+0.6
3,338,499	-		GFF3284	0.31	+1.4
3,338,499	-		GFF3284	0.31	+0.3
3,338,499	-		GFF3284	0.31	+0.2
3,338,499	-		GFF3284	0.31	+1.3
3,338,499	-		GFF3284	0.31	-0.2
3,338,499	-		GFF3284	0.31	+0.6
3,338,499	-		GFF3284	0.31	-0.2
3,338,499	-		GFF3284	0.31	-0.2
3,338,526	+		GFF3284	0.33	-2.0
3,338,536	+		GFF3284	0.34	-0.0
3,338,536	+		GFF3284	0.34	+1.2
3,338,539	-		GFF3284	0.34	+0.1
3,338,541	+		GFF3284	0.35	+0.1
3,338,544	-		GFF3284	0.35	+0.4
3,338,544	-		GFF3284	0.35	-0.1
3,338,544	-		GFF3284	0.35	-0.0
3,338,544	-		GFF3284	0.35	+0.3
3,338,556	+		GFF3284	0.36	-0.6
3,338,556	+		GFF3284	0.36	-0.7
3,338,556	+		GFF3284	0.36	-0.6
3,338,556	+		GFF3284	0.36	+0.4
3,338,557	+		GFF3284	0.36	-2.0
3,338,564	-		GFF3284	0.36	-0.4
3,338,564	-		GFF3284	0.36	+0.0
3,338,564	-		GFF3284	0.36	-0.7
3,338,564	-		GFF3284	0.36	+0.9
3,338,564	-		GFF3284	0.36	+0.4
3,338,564	-		GFF3284	0.36	+0.1
3,338,564	-		GFF3284	0.36	-2.2
3,338,564	-		GFF3284	0.36	-0.4
3,338,564	-		GFF3284	0.36	+1.4
3,338,565	-		GFF3284	0.37	-1.0
3,338,584	+		GFF3284	0.38	+0.8
3,338,609	-		GFF3284	0.40	-0.5
3,338,636	-		GFF3284	0.42	+1.2
3,338,643	-		GFF3284	0.43	+0.5
3,338,658	-		GFF3284	0.44	-2.4
3,338,664	+		GFF3284	0.45	-2.1
3,338,720	+		GFF3284	0.50	-0.4
3,338,734	+		GFF3284	0.51	+1.0
3,338,739	+		GFF3284	0.51	-0.8
3,338,744	+		GFF3284	0.52	-0.8
3,338,744	+		GFF3284	0.52	-2.3
3,338,747	-		GFF3284	0.52	+0.8
3,338,752	-		GFF3284	0.52	-2.5
3,338,783	-		GFF3284	0.55	-0.6
3,338,797	+		GFF3284	0.56	-1.5
3,338,805	+		GFF3284	0.57	-0.1
3,338,814	+		GFF3284	0.57	+0.2
3,338,820	+		GFF3284	0.58	-0.3
3,338,860	+		GFF3284	0.61	-0.7
3,338,860	+		GFF3284	0.61	-1.3
3,338,860	+		GFF3284	0.61	-1.7
3,338,860	+		GFF3284	0.61	-0.1
3,338,860	+		GFF3284	0.61	-0.6
3,338,860	+		GFF3284	0.61	-1.9
3,338,860	+		GFF3284	0.61	-1.2
3,338,861	-		GFF3284	0.61	-0.8
3,338,866	+		GFF3284	0.62	-0.1
3,338,868	-		GFF3284	0.62	-0.7
3,338,868	-		GFF3284	0.62	-0.4
3,338,868	-		GFF3284	0.62	-1.7
3,338,868	-		GFF3284	0.62	-1.9
3,338,868	-		GFF3284	0.62	-0.3
3,338,868	-		GFF3284	0.62	-1.1
3,338,871	+		GFF3284	0.62	-0.2
3,338,871	+		GFF3284	0.62	-0.0
3,338,871	+		GFF3284	0.62	+0.1
3,338,874	-		GFF3284	0.62	+0.8
3,338,879	-		GFF3284	0.63	-0.4
3,338,880	-		GFF3284	0.63	-1.2
3,338,907	-		GFF3284	0.65	+0.1
3,338,917	-		GFF3284	0.66	-2.0
3,338,917	-		GFF3284	0.66	-0.0
3,338,931	+		GFF3284	0.67	+0.1
3,338,931	+		GFF3284	0.67	-0.2
3,338,939	-		GFF3284	0.68	-0.5
3,338,939	-		GFF3284	0.68	-0.4
3,338,960	-		GFF3284	0.70	-1.0
3,338,960	-		GFF3284	0.70	+0.4
3,338,960	-		GFF3284	0.70	+0.4
3,338,965	-		GFF3284	0.70	-0.5
3,339,041	-		GFF3284	0.76	-2.0
3,339,041	-		GFF3284	0.76	-0.2
3,339,049	+		GFF3284	0.77	-2.5
3,339,068	+		GFF3284	0.79	-0.0
3,339,076	-		GFF3284	0.79	-0.2
3,339,077	-		GFF3284	0.80	-1.2
3,339,095	-		GFF3284	0.81	-1.5
3,339,095	-		GFF3284	0.81	+0.1
3,339,095	-		GFF3284	0.81	-2.0
3,339,096	+		GFF3284	0.81	-0.4
3,339,114	-		GFF3284	0.83	-2.1
3,339,151	+		GFF3284	0.86	-2.3
3,339,152	-		GFF3284	0.86	-2.8
3,339,152	-		GFF3284	0.86	+0.4
3,339,161	+		GFF3284	0.87	-1.1
3,339,161	+		GFF3284	0.87	-2.0
3,339,192	+		GFF3284	0.89	-1.5
3,339,221	+				-1.1
3,339,226	+				-1.4
3,339,240	-				-0.2
3,339,242	+				-2.1
3,339,242	+				+1.1
3,339,242	+				-0.8
3,339,242	+				-1.3
3,339,242	+				+0.6
3,339,242	+				-1.2
3,339,242	+				+0.9
3,339,242	+				-0.5
3,339,242	+				+0.6
3,339,250	-				+0.6
3,339,250	-				-0.7
3,339,250	-				-0.2
3,339,250	-				+1.3
3,339,250	-				-1.3
3,339,250	-				-0.5
3,339,250	-				+0.0
3,339,250	-				-0.3
3,339,258	-				+0.7
3,339,331	+				-0.8
3,339,350	+				+0.2
3,339,398	-				-0.5
3,339,421	+		GFF3285	0.11	-0.5
3,339,434	+		GFF3285	0.12	+0.6
3,339,441	+		GFF3285	0.13	-2.4
3,339,441	+		GFF3285	0.13	-2.4
3,339,442	-		GFF3285	0.13	+1.3
3,339,449	-		GFF3285	0.14	+0.2
3,339,449	-		GFF3285	0.14	-0.0
3,339,449	-		GFF3285	0.14	+0.3
3,339,449	-		GFF3285	0.14	-1.8
3,339,469	-		GFF3285	0.16	-1.2
3,339,485	-		GFF3285	0.17	+0.0
3,339,501	+		GFF3285	0.19	-0.0
3,339,501	+		GFF3285	0.19	+0.3
3,339,509	-		GFF3285	0.20	-0.5
3,339,509	-		GFF3285	0.20	+0.6
3,339,509	-		GFF3285	0.20	-1.0
3,339,519	-		GFF3285	0.21	-0.4
3,339,562	-		GFF3285	0.25	-0.3
3,339,562	-		GFF3285	0.25	+1.2
3,339,586	+		GFF3285	0.28	+0.2
3,339,588	+		GFF3285	0.28	+0.4
3,339,611	-		GFF3285	0.30	+0.4
3,339,629	-		GFF3285	0.32	-0.8
3,339,666	-		GFF3285	0.36	+1.0
3,339,678	+		GFF3285	0.37	-0.0
3,339,678	+		GFF3285	0.37	-0.9
3,339,711	+		GFF3285	0.41	-0.6
3,339,739	-		GFF3285	0.44	+0.0
3,339,777	-		GFF3285	0.48	+0.1
3,339,779	-		GFF3285	0.48	-1.1
3,339,779	-		GFF3285	0.48	-1.6
3,339,780	+		GFF3285	0.48	-0.2
3,339,788	-		GFF3285	0.49	+0.9
3,339,813	-		GFF3285	0.51	-0.8
3,339,819	+		GFF3285	0.52	-1.2
3,339,827	+		GFF3285	0.53	-2.1
3,339,827	+		GFF3285	0.53	-1.3
3,339,827	+		GFF3285	0.53	-1.4
3,339,827	+		GFF3285	0.53	-0.9
3,339,827	-		GFF3285	0.53	-1.3
3,339,835	-		GFF3285	0.54	-0.2
3,339,835	-		GFF3285	0.54	+1.3
3,339,835	-		GFF3285	0.54	+0.7
3,339,836	+		GFF3285	0.54	-0.6
3,339,837	+		GFF3285	0.54	+0.5
3,339,837	+		GFF3285	0.54	+0.5
3,339,843	+		GFF3285	0.54	+0.7
3,339,849	+		GFF3285	0.55	+0.2
3,339,849	+		GFF3285	0.55	-3.1
3,339,849	+		GFF3285	0.55	-2.0
3,339,849	+		GFF3285	0.55	-2.0
3,339,851	-		GFF3285	0.55	+0.8
3,339,857	-		GFF3285	0.56	-0.9
3,339,857	-		GFF3285	0.56	-1.2
3,339,857	-		GFF3285	0.56	-0.2
3,339,891	+		GFF3285	0.59	+1.0
3,339,899	+		GFF3285	0.60	-0.0
3,339,899	+		GFF3285	0.60	-1.5
3,339,907	-		GFF3285	0.61	-1.0
3,339,907	-		GFF3285	0.61	-1.0
3,339,940	+		GFF3285	0.64	-1.9
3,339,965	-		GFF3285	0.67	-0.5
3,339,976	+		GFF3285	0.68	-0.9
3,339,978	+		GFF3285	0.68	+0.7
3,339,997	+		GFF3285	0.70	-0.3
3,340,002	+		GFF3285	0.71	-0.9
3,340,005	-		GFF3285	0.71	-0.6
3,340,038	+		GFF3285	0.75	-0.0
3,340,043	+		GFF3285	0.75	-0.3
3,340,046	-		GFF3285	0.75	-0.4
3,340,051	-		GFF3285	0.76	-1.7
3,340,051	-		GFF3285	0.76	-0.6
3,340,051	-		GFF3285	0.76	-0.4
3,340,061	+		GFF3285	0.77	+1.0
3,340,061	+		GFF3285	0.77	-0.2
3,340,069	+		GFF3285	0.78	+0.3
3,340,069	-		GFF3285	0.78	+0.5
3,340,082	-		GFF3285	0.79	-0.6
3,340,084	+		GFF3285	0.79	+0.1
3,340,084	+		GFF3285	0.79	-0.2
3,340,084	+		GFF3285	0.79	+0.1
3,340,087	-		GFF3285	0.80	-1.2
3,340,087	-		GFF3285	0.80	-0.5
3,340,087	-		GFF3285	0.80	-0.5
3,340,087	-		GFF3285	0.80	+0.7
3,340,092	-		GFF3285	0.80	-0.3
3,340,092	-		GFF3285	0.80	+0.1
3,340,092	-		GFF3285	0.80	-1.1
3,340,092	-		GFF3285	0.80	-0.9
3,340,098	+		GFF3285	0.81	-1.3
3,340,098	+		GFF3285	0.81	+1.3
3,340,110	+		GFF3285	0.82	-1.5
3,340,110	+		GFF3285	0.82	-0.2
3,340,118	-		GFF3285	0.83	-0.4
3,340,123	-		GFF3285	0.83	+1.1
3,340,124	+		GFF3285	0.84	-1.4
3,340,132	-		GFF3285	0.84	-2.2
3,340,132	-		GFF3285	0.84	-0.0
3,340,132	-		GFF3285	0.84	+0.0
3,340,164	-		GFF3285	0.88	-1.7
3,340,184	+		GFF3285	0.90	-0.4
3,340,235	+				-1.3
3,340,235	+				-1.9
3,340,235	+				-1.8
3,340,235	+				-0.2
3,340,243	-				-1.2
3,340,243	-				-0.2
3,340,243	-				-2.7
3,340,243	-				+0.7
3,340,245	+				+0.2
3,340,253	-				-2.5
3,340,253	-				+0.8
3,340,301	+				+1.7
3,340,301	+				-2.4
3,340,301	+				+0.8
3,340,303	-				+1.1
3,340,309	-				-0.4
3,340,309	-				-0.5
3,340,309	-				-0.0
3,340,324	+				-0.2
3,340,324	+				-0.7
3,340,416	-		GFF3286	0.10	-0.2
3,340,426	+		GFF3286	0.11	+0.2
3,340,429	-		GFF3286	0.12	+0.6
3,340,462	+		GFF3286	0.15	-1.5
3,340,474	+		GFF3286	0.16	+0.7
3,340,474	+		GFF3286	0.16	-0.7
3,340,474	+		GFF3286	0.16	+1.5
3,340,474	+		GFF3286	0.16	+0.6
3,340,474	+		GFF3286	0.16	-1.2
3,340,474	+		GFF3286	0.16	-1.9
3,340,474	+		GFF3286	0.16	-0.4
3,340,479	+		GFF3286	0.16	+0.9
3,340,493	+		GFF3286	0.18	-0.4
3,340,493	+		GFF3286	0.18	-1.2
3,340,507	+		GFF3286	0.19	-0.4
3,340,515	-		GFF3286	0.20	-2.0
3,340,524	+		GFF3286	0.21	+0.9
3,340,530	-		GFF3286	0.21	-1.4
3,340,533	-		GFF3286	0.22	-1.7
3,340,555	+		GFF3286	0.24	-2.5
3,340,555	+		GFF3286	0.24	-3.0
3,340,556	-		GFF3286	0.24	+0.2
3,340,563	-		GFF3286	0.24	-1.3
3,340,563	-		GFF3286	0.24	-1.4
3,340,568	+		GFF3286	0.25	+0.3
3,340,582	-		GFF3286	0.26	-1.2
3,340,602	-		GFF3286	0.28	-0.8
3,340,617	-		GFF3286	0.29	+0.4
3,340,627	+		GFF3286	0.30	-1.0
3,340,635	-		GFF3286	0.31	-0.9
3,340,635	-		GFF3286	0.31	+0.9
3,340,635	-		GFF3286	0.31	+0.4
3,340,637	+		GFF3286	0.31	-0.3
3,340,655	-		GFF3286	0.33	-0.3
3,340,675	-		GFF3286	0.35	-2.9
3,340,747	+		GFF3286	0.42	-2.0
3,340,752	+		GFF3286	0.42	-0.4
3,340,752	+		GFF3286	0.42	+1.1
3,340,752	+		GFF3286	0.42	-1.9
3,340,752	+		GFF3286	0.42	+0.2
3,340,752	+		GFF3286	0.42	-0.0
3,340,760	-		GFF3286	0.43	-2.0
3,340,760	-		GFF3286	0.43	-0.3
3,340,764	-		GFF3286	0.43	+0.9
3,340,783	-		GFF3286	0.45	-0.8
3,340,789	+		GFF3286	0.46	+2.1
3,340,789	+		GFF3286	0.46	+0.2
3,340,799	-		GFF3286	0.47	-0.4
3,340,805	-		GFF3286	0.47	+1.1
3,340,861	+		GFF3286	0.53	-0.2
3,340,892	+		GFF3286	0.55	-1.6
3,340,893	+		GFF3286	0.56	-0.7
3,340,901	+		GFF3286	0.56	-1.1
3,340,911	-		GFF3286	0.57	-0.8
3,340,914	+		GFF3286	0.58	-0.3
3,340,936	-		GFF3286	0.60	+0.4
3,340,954	-		GFF3286	0.61	-0.0
3,340,989	+		GFF3286	0.65	-1.2
3,341,020	-		GFF3286	0.68	+1.4
3,341,043	+		GFF3286	0.70	+0.1
3,341,073	-		GFF3286	0.73	-1.5
3,341,140	-		GFF3286	0.79	-0.2
3,341,141	+		GFF3286	0.79	-0.5
3,341,198	+		GFF3286	0.84	-1.2
3,341,198	+		GFF3286	0.84	-0.1
3,341,206	-		GFF3286	0.85	-1.5
3,341,209	+		GFF3286	0.85	-1.2
3,341,217	+		GFF3286	0.86	+0.4
3,341,217	-		GFF3286	0.86	+0.6
3,341,217	-		GFF3286	0.86	+0.6
3,341,254	+		GFF3286	0.90	-1.9
3,341,254	+		GFF3286	0.90	+1.7
3,341,254	+		GFF3286	0.90	+1.4
3,341,262	-				-0.2
3,341,262	-				+1.5