Strain Fitness in Sphingobium sp. HT1-2 around GFF1726

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,752,741	+		GFF1725	0.69	-0.3
1,752,743	+		GFF1725	0.69	+0.3
1,752,743	+		GFF1725	0.69	-0.6
1,752,743	+		GFF1725	0.69	-0.5
1,752,751	-		GFF1725	0.69	-1.3
1,752,751	-		GFF1725	0.69	-1.1
1,752,768	+		GFF1725	0.70	-0.1
1,752,788	+		GFF1725	0.71	+0.5
1,752,790	-		GFF1725	0.71	+0.2
1,752,798	+		GFF1725	0.71	+0.1
1,752,800	-		GFF1725	0.71	+0.7
1,752,802	+		GFF1725	0.71	+0.2
1,752,802	+		GFF1725	0.71	-1.7
1,752,810	-		GFF1725	0.72	+0.5
1,752,810	-		GFF1725	0.72	+1.1
1,752,810	-		GFF1725	0.72	-1.1
1,752,810	-		GFF1725	0.72	+0.3
1,752,810	-		GFF1725	0.72	-0.6
1,752,816	-		GFF1725	0.72	-0.2
1,752,818	+		GFF1725	0.72	-1.6
1,752,824	-		GFF1725	0.72	-0.3
1,752,834	+		GFF1725	0.72	-0.4
1,752,839	+		GFF1725	0.73	+0.4
1,752,839	+		GFF1725	0.73	+0.2
1,752,847	-		GFF1725	0.73	-0.3
1,752,849	-		GFF1725	0.73	-0.5
1,752,851	+		GFF1725	0.73	+0.1
1,752,852	-		GFF1725	0.73	-0.8
1,752,860	-		GFF1725	0.73	+0.7
1,752,871	+		GFF1725	0.74	-2.2
1,752,879	-		GFF1725	0.74	+1.0
1,752,907	+		GFF1725	0.75	+1.4
1,752,907	+		GFF1725	0.75	+0.1
1,752,908	+		GFF1725	0.75	+1.1
1,752,910	-		GFF1725	0.75	+0.2
1,752,915	-		GFF1725	0.75	-0.2
1,752,915	-		GFF1725	0.75	+1.2
1,752,915	-		GFF1725	0.75	+0.8
1,752,915	-		GFF1725	0.75	-0.3
1,752,956	-		GFF1725	0.77	-1.3
1,752,956	-		GFF1725	0.77	-0.8
1,752,956	-		GFF1725	0.77	+0.6
1,752,982	+		GFF1725	0.77	-1.2
1,752,990	-		GFF1725	0.78	-0.1
1,753,015	+		GFF1725	0.79	-2.2
1,753,015	+		GFF1725	0.79	-1.1
1,753,015	+		GFF1725	0.79	-1.3
1,753,023	-		GFF1725	0.79	+0.3
1,753,052	+		GFF1725	0.80	-0.2
1,753,058	-		GFF1725	0.80	+0.4
1,753,073	+		GFF1725	0.81	-0.7
1,753,088	-		GFF1725	0.81	-1.2
1,753,094	+		GFF1725	0.81	-1.0
1,753,102	-		GFF1725	0.82	-0.0
1,753,106	+		GFF1725	0.82	-0.2
1,753,114	-		GFF1725	0.82	-0.4
1,753,117	+		GFF1725	0.82	-2.3
1,753,122	+		GFF1725	0.82	-2.1
1,753,124	+		GFF1725	0.82	-0.2
1,753,130	-		GFF1725	0.83	-1.1
1,753,132	+		GFF1725	0.83	+0.1
1,753,132	+		GFF1725	0.83	-1.3
1,753,132	+		GFF1725	0.83	-0.3
1,753,132	+		GFF1725	0.83	+0.1
1,753,139	+		GFF1725	0.83	-0.3
1,753,140	-		GFF1725	0.83	+1.9
1,753,140	-		GFF1725	0.83	-0.4
1,753,140	-		GFF1725	0.83	-0.9
1,753,166	+		GFF1725	0.84	+0.1
1,753,174	-		GFF1725	0.84	+0.2
1,753,185	-		GFF1725	0.85	-0.3
1,753,207	+		GFF1725	0.85	-0.4
1,753,215	+		GFF1725	0.86	-0.9
1,753,230	+		GFF1725	0.86	+2.2
1,753,230	+		GFF1725	0.86	-0.7
1,753,230	+		GFF1725	0.86	+0.1
1,753,230	+		GFF1725	0.86	-0.4
1,753,230	+		GFF1725	0.86	-2.2
1,753,230	+		GFF1725	0.86	-0.4
1,753,240	-		GFF1725	0.86	-0.4
1,753,275	+		GFF1725	0.88	-1.0
1,753,313	-		GFF1725	0.89	-1.9
1,753,313	-		GFF1725	0.89	+0.1
1,753,401	+				+0.2
1,753,411	-				+0.1
1,753,454	+				+0.9
1,753,454	+				+0.2
1,753,462	-				-0.4
1,753,462	-				-2.5
1,753,467	+				+1.1
1,753,472	+				-1.4
1,753,478	+				-2.0
1,753,505	+				-1.1
1,753,505	+				+0.2
1,753,505	+				-0.8
1,753,505	+				-1.5
1,753,505	+				-0.1
1,753,508	-				-2.3
1,753,510	+				+0.3
1,753,513	-				+0.2
1,753,513	-				+0.4
1,753,513	-				-1.2
1,753,515	+				+0.5
1,753,515	+				+0.0
1,753,515	+				+1.0
1,753,515	+				-0.6
1,753,515	+				-0.0
1,753,518	-				+0.5
1,753,523	-				+0.7
1,753,523	-				-1.3
1,753,523	-				-1.0
1,753,523	-				+0.1
1,753,523	-				-2.3
1,753,523	-				+0.5
1,753,523	-				+0.5
1,753,523	-				-0.6
1,753,523	-				+0.6
1,753,523	-				-0.9
1,753,530	+				+0.9
1,753,564	-				+1.1
1,753,571	-				-0.2
1,753,574	+				-1.5
1,753,576	-				-0.7
1,753,576	-				+1.1
1,753,576	-				-0.6
1,753,576	-				+1.5
1,753,581	-				-1.1
1,753,582	-				+0.7
1,753,582	-				+0.7
1,753,605	+				-0.8
1,753,605	+				-0.1
1,753,610	+				-1.7
1,753,610	+				-1.4
1,753,613	-				-0.4
1,753,613	-				+0.4
1,753,613	-				+0.6
1,753,623	-				-1.3
1,753,655	-				-0.1
1,753,670	-				+0.3
1,753,670	-				+0.0
1,753,675	+				+0.6
1,753,677	+				+1.8
1,753,842	+		GFF1726	0.80	-2.3
1,753,881	+				+1.7
1,753,896	-				-0.6
1,753,896	-				-1.9
1,753,896	-				-1.2
1,753,909	-				+0.4
1,753,958	+				+0.4
1,753,958	+				-2.5
1,753,963	+				+2.1
1,753,963	+				-1.9
1,753,963	+				+0.4
1,753,963	+				-1.1
1,753,968	+				-0.3
1,753,968	+				-1.2
1,753,971	-				-0.5
1,753,971	-				-0.7
1,753,971	-				-1.7
1,753,971	-				+1.6
1,753,971	-				-0.7
1,753,973	+				-1.3
1,753,976	-				+0.2
1,753,976	-				-1.0
1,753,978	+				-1.8
1,753,986	-				-0.8
1,753,986	-				-2.0
1,753,994	-				-1.0
1,754,023	+				+0.6
1,754,043	+				-0.2
1,754,043	+				-1.1
1,754,051	-				-1.4
1,754,051	-				-1.7
1,754,051	-				-0.1
1,754,065	-				-0.1
1,754,072	-				-0.1
1,754,077	+				+0.6
1,754,082	+				-0.2
1,754,199	+		GFF1727	0.14	+0.4
1,754,201	-		GFF1727	0.14	+0.6
1,754,228	+		GFF1727	0.16	-0.4
1,754,300	-		GFF1727	0.22	-0.1
1,754,307	+		GFF1727	0.22	-2.8
1,754,310	+		GFF1727	0.22	-1.2
1,754,310	+		GFF1727	0.22	+0.0
1,754,313	-		GFF1727	0.22	+0.6
1,754,313	-		GFF1727	0.22	-2.0
1,754,318	-		GFF1727	0.23	-0.7
1,754,325	+		GFF1727	0.23	+0.4
1,754,325	+		GFF1727	0.23	-2.2
1,754,352	+		GFF1727	0.25	-1.1
1,754,352	+		GFF1727	0.25	+0.3
1,754,353	+		GFF1727	0.25	-2.3
1,754,355	-		GFF1727	0.25	-0.4
1,754,357	+		GFF1727	0.26	+0.9
1,754,360	-		GFF1727	0.26	+1.0
1,754,367	+		GFF1727	0.26	+0.4
1,754,367	+		GFF1727	0.26	+0.5
1,754,367	+		GFF1727	0.26	-2.2
1,754,375	-		GFF1727	0.27	+0.4
1,754,375	-		GFF1727	0.27	-1.0
1,754,383	+		GFF1727	0.27	+0.4
1,754,383	+		GFF1727	0.27	-0.4
1,754,383	+		GFF1727	0.27	+0.0
1,754,391	-		GFF1727	0.28	-0.1
1,754,391	-		GFF1727	0.28	-2.6
1,754,391	-		GFF1727	0.28	-2.1
1,754,449	+		GFF1727	0.32	-2.2
1,754,449	+		GFF1727	0.32	+0.1
1,754,457	-		GFF1727	0.33	+0.2
1,754,468	-		GFF1727	0.33	+1.1
1,754,502	-		GFF1727	0.36	+1.5
1,754,508	+		GFF1727	0.36	-0.6
1,754,512	-		GFF1727	0.37	-1.1
1,754,516	-		GFF1727	0.37	-1.9
1,754,516	-		GFF1727	0.37	-0.4
1,754,516	-		GFF1727	0.37	-1.1
1,754,550	-		GFF1727	0.39	-1.4
1,754,553	+		GFF1727	0.40	-2.0
1,754,563	-		GFF1727	0.40	+0.2
1,754,595	+		GFF1727	0.43	-0.4
1,754,595	+		GFF1727	0.43	+0.5
1,754,595	+		GFF1727	0.43	-0.4
1,754,603	-		GFF1727	0.43	+0.1
1,754,636	-		GFF1727	0.45	-0.4
1,754,639	+		GFF1727	0.46	-1.2
1,754,639	+		GFF1727	0.46	-1.2
1,754,639	+		GFF1727	0.46	-0.6
1,754,640	+		GFF1727	0.46	-0.1
1,754,642	-		GFF1727	0.46	+0.1
1,754,654	+		GFF1727	0.47	+1.3
1,754,654	+		GFF1727	0.47	-1.3
1,754,654	+		GFF1727	0.47	+0.3
1,754,654	+		GFF1727	0.47	-0.6
1,754,654	+		GFF1727	0.47	-2.2
1,754,662	-		GFF1727	0.47	+0.3
1,754,662	-		GFF1727	0.47	-0.2
1,754,662	-		GFF1727	0.47	+0.3
1,754,662	-		GFF1727	0.47	+0.6
1,754,662	-		GFF1727	0.47	-0.2
1,754,662	-		GFF1727	0.47	-1.5
1,754,662	-		GFF1727	0.47	-1.8
1,754,663	-		GFF1727	0.47	-1.6
1,754,669	+		GFF1727	0.48	+0.1
1,754,669	-		GFF1727	0.48	-1.6
1,754,669	-		GFF1727	0.48	+0.0
1,754,677	-		GFF1727	0.48	-2.1
1,754,677	-		GFF1727	0.48	+1.0
1,754,680	+		GFF1727	0.49	-0.4
1,754,713	-		GFF1727	0.51	+0.9
1,754,716	+		GFF1727	0.51	+0.1
1,754,724	+		GFF1727	0.52	-0.3
1,754,732	-		GFF1727	0.52	+0.3
1,754,740	-		GFF1727	0.53	-0.9
1,754,757	-		GFF1727	0.54	+0.4
1,754,759	+		GFF1727	0.54	+0.5
1,754,764	-		GFF1727	0.55	-0.1
1,754,784	+		GFF1727	0.56	-1.1
1,754,786	-		GFF1727	0.56	+0.0
1,754,828	-		GFF1727	0.59	-0.3