Strain Fitness in Sphingobium sp. HT1-2 around GFF1456

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,482,912	+		GFF1455	0.49	+1.6
1,482,920	+		GFF1455	0.50	+1.1
1,482,926	+		GFF1455	0.50	+0.2
1,482,933	-		GFF1455	0.50	+0.3
1,482,950	+		GFF1455	0.51	-1.3
1,482,953	-		GFF1455	0.51	+0.9
1,482,955	+		GFF1455	0.51	+1.5
1,482,964	-		GFF1455	0.52	-2.1
1,482,969	-		GFF1455	0.52	-0.1
1,482,975	-		GFF1455	0.53	-1.5
1,482,982	+		GFF1455	0.53	-0.4
1,482,988	+		GFF1455	0.53	+0.3
1,482,988	+		GFF1455	0.53	-1.1
1,482,993	+		GFF1455	0.54	+0.4
1,482,993	+		GFF1455	0.54	+0.1
1,482,996	-		GFF1455	0.54	-1.6
1,483,001	-		GFF1455	0.54	-0.8
1,483,028	-		GFF1455	0.56	+0.2
1,483,036	+		GFF1455	0.56	+0.4
1,483,041	+		GFF1455	0.56	-1.1
1,483,041	+		GFF1455	0.56	-0.9
1,483,049	-		GFF1455	0.57	-0.5
1,483,049	-		GFF1455	0.57	-0.3
1,483,049	-		GFF1455	0.57	-1.3
1,483,049	-		GFF1455	0.57	-0.3
1,483,072	+		GFF1455	0.58	+0.7
1,483,086	+		GFF1455	0.59	-0.1
1,483,112	+		GFF1455	0.60	-1.3
1,483,112	+		GFF1455	0.60	+1.3
1,483,113	+		GFF1455	0.60	-1.9
1,483,130	-		GFF1455	0.61	-1.1
1,483,130	-		GFF1455	0.61	+0.9
1,483,130	-		GFF1455	0.61	-0.4
1,483,131	+		GFF1455	0.61	-2.1
1,483,138	+		GFF1455	0.62	-2.7
1,483,139	-		GFF1455	0.62	-1.8
1,483,143	+		GFF1455	0.62	+0.1
1,483,145	+		GFF1455	0.62	-0.7
1,483,151	-		GFF1455	0.62	-0.8
1,483,153	-		GFF1455	0.62	-0.6
1,483,153	-		GFF1455	0.62	+0.4
1,483,171	+		GFF1455	0.63	-0.7
1,483,191	-		GFF1455	0.65	-0.3
1,483,215	-		GFF1455	0.66	+0.7
1,483,230	-		GFF1455	0.67	+0.6
1,483,232	+		GFF1455	0.67	-2.1
1,483,260	+		GFF1455	0.68	-0.4
1,483,260	+		GFF1455	0.68	+0.7
1,483,267	-		GFF1455	0.69	-0.8
1,483,268	-		GFF1455	0.69	+0.6
1,483,303	-		GFF1455	0.71	+0.5
1,483,305	+		GFF1455	0.71	+0.1
1,483,318	-		GFF1455	0.72	+0.2
1,483,328	+		GFF1455	0.72	+0.1
1,483,328	+		GFF1455	0.72	-0.6
1,483,335	+		GFF1455	0.72	-3.6
1,483,341	+		GFF1455	0.73	-0.3
1,483,341	+		GFF1455	0.73	-3.1
1,483,343	-		GFF1455	0.73	+0.1
1,483,349	-		GFF1455	0.73	+0.2
1,483,349	-		GFF1455	0.73	+0.6
1,483,351	+		GFF1455	0.73	-0.0
1,483,359	-		GFF1455	0.74	-1.6
1,483,380	+		GFF1455	0.75	-0.7
1,483,380	+		GFF1455	0.75	-2.0
1,483,388	-		GFF1455	0.75	+0.1
1,483,388	-		GFF1455	0.75	-0.4
1,483,398	-		GFF1455	0.76	-0.4
1,483,408	+		GFF1455	0.76	+0.9
1,483,408	+		GFF1455	0.76	+0.3
1,483,408	+		GFF1455	0.76	+0.1
1,483,408	+		GFF1455	0.76	+0.7
1,483,408	+		GFF1455	0.76	+0.2
1,483,414	-		GFF1455	0.77	+0.5
1,483,416	-		GFF1455	0.77	-0.0
1,483,416	-		GFF1455	0.77	+0.2
1,483,418	+		GFF1455	0.77	+0.1
1,483,422	+		GFF1455	0.77	-0.2
1,483,422	+		GFF1455	0.77	-0.3
1,483,423	-		GFF1455	0.77	-1.7
1,483,435	-		GFF1455	0.78	-1.9
1,483,460	-		GFF1455	0.79	-1.7
1,483,484	+		GFF1455	0.81	-0.1
1,483,489	+		GFF1455	0.81	-0.1
1,483,492	-		GFF1455	0.81	-0.9
1,483,497	-		GFF1455	0.81	-0.7
1,483,503	+		GFF1455	0.82	-0.7
1,483,532	+		GFF1455	0.83	-1.7
1,483,541	+		GFF1455	0.84	-1.3
1,483,541	+		GFF1455	0.84	-0.7
1,483,546	+		GFF1455	0.84	-0.6
1,483,549	-		GFF1455	0.84	+0.4
1,483,551	+		GFF1455	0.84	+0.9
1,483,554	-		GFF1455	0.85	-0.4
1,483,554	-		GFF1455	0.85	-0.6
1,483,556	+		GFF1455	0.85	+0.2
1,483,559	-		GFF1455	0.85	-1.6
1,483,580	+		GFF1455	0.86	+0.3
1,483,582	+		GFF1455	0.86	+0.2
1,483,582	+		GFF1455	0.86	+0.2
1,483,590	-		GFF1455	0.87	-0.6
1,483,590	-		GFF1455	0.87	-1.2
1,483,595	+		GFF1455	0.87	+0.9
1,483,595	+		GFF1455	0.87	-1.4
1,483,598	-		GFF1455	0.87	-0.1
1,483,598	-		GFF1455	0.87	+0.6
1,483,624	+		GFF1455	0.88	-1.2
1,483,634	+		GFF1455	0.89	-0.0
1,483,637	+		GFF1455	0.89	-1.3
1,483,642	-		GFF1455	0.89	+1.8
1,483,651	-		GFF1455	0.90	+0.1
1,483,661	-				-1.0
1,483,662	+				-1.1
1,483,685	+				+0.6
1,483,693	-				+0.3
1,483,728	+				+0.5
1,483,743	+				-1.8
1,483,743	+				-2.7
1,483,751	-				+0.3
1,483,751	-				+0.1
1,483,751	-				-0.5
1,483,751	-				+0.6
1,483,751	-				+0.5
1,483,835	-				-0.1
1,483,839	-				-0.8
1,483,846	-				-1.2
1,483,846	-				-0.0
1,483,846	-				-1.8
1,483,847	+				-0.6
1,483,847	+				-0.8
1,483,860	-				-2.0
1,483,865	+				+0.6
1,483,865	+				-0.0
1,483,867	-				-0.1
1,483,900	-				-0.6
1,483,912	+				+0.5
1,483,913	-				-0.5
1,483,920	-				-1.8
1,483,927	+				-0.1
1,483,927	+				-0.1
1,483,935	-				-0.7
1,483,935	-				-1.3
1,483,945	+				-0.1
1,483,976	+				+0.2
1,483,976	+				+0.2
1,483,976	+				-1.1
1,483,976	+				-1.5
1,483,984	-				-0.6
1,483,985	+				-1.6
1,483,988	-				-1.4
1,483,995	+				-1.5
1,484,003	-				-0.7
1,484,003	-				-0.4
1,484,003	-				-0.8
1,484,021	-				-1.1
1,484,035	+				-2.2
1,484,055	-				-0.5
1,484,079	+				+0.5
1,484,084	+				-0.3
1,484,086	+				-0.2
1,484,087	-				+0.4
1,484,087	-				-2.1
1,484,087	-				-0.2
1,484,087	-				-0.5
1,484,089	+				-0.5
1,484,089	-				-2.6
1,484,094	-				-1.1
1,484,121	+		GFF1456	0.11	-0.7
1,484,121	+		GFF1456	0.11	-0.5
1,484,121	+		GFF1456	0.11	+0.2
1,484,121	+		GFF1456	0.11	-0.5
1,484,121	+		GFF1456	0.11	-1.3
1,484,121	+		GFF1456	0.11	-1.3
1,484,121	+		GFF1456	0.11	+0.5
1,484,121	+		GFF1456	0.11	-0.0
1,484,121	+		GFF1456	0.11	-2.1
1,484,129	-		GFF1456	0.12	+0.4
1,484,129	-		GFF1456	0.12	-0.7
1,484,129	-		GFF1456	0.12	-0.3
1,484,129	-		GFF1456	0.12	+0.6
1,484,129	-		GFF1456	0.12	+0.8
1,484,135	+		GFF1456	0.12	-0.5
1,484,143	-		GFF1456	0.12	-0.4
1,484,148	-		GFF1456	0.13	+0.5
1,484,151	+		GFF1456	0.13	-0.4
1,484,151	+		GFF1456	0.13	-0.5
1,484,164	-		GFF1456	0.13	-0.0
1,484,170	-		GFF1456	0.14	+0.2
1,484,176	+		GFF1456	0.14	+0.7
1,484,215	+		GFF1456	0.16	-0.0
1,484,220	-		GFF1456	0.16	-0.1
1,484,247	-		GFF1456	0.18	-0.0
1,484,256	+		GFF1456	0.18	-2.3
1,484,256	+		GFF1456	0.18	+0.4
1,484,264	-		GFF1456	0.19	-1.1
1,484,264	-		GFF1456	0.19	+0.3
1,484,270	+		GFF1456	0.19	+0.2
1,484,271	+		GFF1456	0.19	-0.3
1,484,275	+		GFF1456	0.19	-1.4
1,484,280	+		GFF1456	0.20	-2.0
1,484,297	+		GFF1456	0.20	+0.6
1,484,297	+		GFF1456	0.20	-0.9
1,484,297	+		GFF1456	0.20	-2.4
1,484,297	+		GFF1456	0.20	-0.4
1,484,297	+		GFF1456	0.20	+0.7
1,484,297	+		GFF1456	0.20	-0.4
1,484,297	+		GFF1456	0.20	-0.3
1,484,297	+		GFF1456	0.20	+0.3
1,484,299	+		GFF1456	0.21	+0.6
1,484,305	-		GFF1456	0.21	+0.8
1,484,305	-		GFF1456	0.21	+0.1
1,484,305	-		GFF1456	0.21	+1.1
1,484,305	-		GFF1456	0.21	+0.2
1,484,305	-		GFF1456	0.21	+2.0
1,484,305	-		GFF1456	0.21	-1.0
1,484,305	-		GFF1456	0.21	-2.3
1,484,305	-		GFF1456	0.21	-0.3
1,484,305	-		GFF1456	0.21	+0.1
1,484,314	+		GFF1456	0.21	-0.1
1,484,339	+		GFF1456	0.23	-0.0
1,484,339	+		GFF1456	0.23	-0.6
1,484,339	+		GFF1456	0.23	-0.9
1,484,344	-		GFF1456	0.23	-1.6
1,484,347	-		GFF1456	0.23	-0.4
1,484,349	+		GFF1456	0.23	-0.3
1,484,366	-		GFF1456	0.24	-0.5
1,484,373	+		GFF1456	0.24	-1.3
1,484,380	+		GFF1456	0.25	+0.2
1,484,392	+		GFF1456	0.26	-0.4
1,484,456	-		GFF1456	0.29	-1.4
1,484,475	-		GFF1456	0.30	-0.9
1,484,485	-		GFF1456	0.30	-0.6
1,484,485	-		GFF1456	0.30	-1.6
1,484,487	+		GFF1456	0.31	+0.6
1,484,492	+		GFF1456	0.31	-1.1
1,484,533	-		GFF1456	0.33	-0.1
1,484,579	-		GFF1456	0.35	-1.0
1,484,585	-		GFF1456	0.36	+0.3
1,484,589	+		GFF1456	0.36	-0.1
1,484,599	-		GFF1456	0.36	-0.4
1,484,612	+		GFF1456	0.37	+0.5
1,484,615	-		GFF1456	0.37	+0.0
1,484,620	+		GFF1456	0.38	+0.4
1,484,620	+		GFF1456	0.38	-1.1
1,484,620	-		GFF1456	0.38	-2.1
1,484,620	-		GFF1456	0.38	-1.6
1,484,628	-		GFF1456	0.38	+0.6
1,484,640	+		GFF1456	0.39	-1.5
1,484,682	+		GFF1456	0.41	+1.2
1,484,690	-		GFF1456	0.41	-0.2
1,484,690	-		GFF1456	0.41	+0.6
1,484,710	+		GFF1456	0.42	-1.9
1,484,726	+		GFF1456	0.43	+0.4
1,484,748	+		GFF1456	0.44	-0.2
1,484,748	+		GFF1456	0.44	-0.4
1,484,778	-		GFF1456	0.46	-1.3
1,484,784	-		GFF1456	0.46	+0.3
1,484,785	+		GFF1456	0.46	-0.7
1,484,787	+		GFF1456	0.46	+1.5
1,484,787	+		GFF1456	0.46	-0.1
1,484,789	-		GFF1456	0.47	+1.1
1,484,830	+		GFF1456	0.49	+1.0
1,484,834	-		GFF1456	0.49	-0.8
1,484,838	+		GFF1456	0.49	+0.9
1,484,847	+		GFF1456	0.50	+1.1
1,484,855	+		GFF1456	0.50	-2.6
1,484,855	+		GFF1456	0.50	+0.6
1,484,857	+		GFF1456	0.50	-0.0
1,484,863	-		GFF1456	0.50	-2.5
1,484,863	-		GFF1456	0.50	+2.0
1,484,863	-		GFF1456	0.50	+0.6
1,484,881	-		GFF1456	0.51	+0.3
1,484,896	+		GFF1456	0.52	-2.1
1,484,916	+		GFF1456	0.53	-0.2
1,484,931	-		GFF1456	0.54	+0.1
1,484,953	-		GFF1456	0.55	-0.5
1,484,968	+		GFF1456	0.56	-0.1
1,484,968	+		GFF1456	0.56	+0.6
1,484,968	-		GFF1456	0.56	+0.4
1,484,976	-		GFF1456	0.56	+0.4
1,484,992	+		GFF1456	0.57	-1.0
1,485,021	-		GFF1456	0.59	+0.4
1,485,032	-		GFF1456	0.59	-0.1
1,485,032	-		GFF1456	0.59	-0.3
1,485,040	-		GFF1456	0.60	+0.1
1,485,058	+		GFF1456	0.61	-1.0
1,485,076	+		GFF1456	0.62	-0.1
1,485,086	-		GFF1456	0.62	-0.2
1,485,094	+		GFF1456	0.63	+0.9
1,485,109	-		GFF1456	0.63	-0.7
1,485,132	-		GFF1456	0.65	-0.7
1,485,142	+		GFF1456	0.65	-0.2
1,485,142	+		GFF1456	0.65	+0.7
1,485,145	+		GFF1456	0.65	-0.0
1,485,153	-		GFF1456	0.66	-0.8
1,485,159	+		GFF1456	0.66	-0.9
1,485,159	+		GFF1456	0.66	+0.8
1,485,161	-		GFF1456	0.66	+0.2
1,485,167	-		GFF1456	0.67	-0.1
1,485,167	-		GFF1456	0.67	+0.6
1,485,168	-		GFF1456	0.67	-0.0
1,485,169	+		GFF1456	0.67	-0.4
1,485,169	+		GFF1456	0.67	-1.0
1,485,169	+		GFF1456	0.67	-1.1
1,485,169	+		GFF1456	0.67	-2.3
1,485,169	+		GFF1456	0.67	+0.5
1,485,169	+		GFF1456	0.67	-0.1
1,485,169	+		GFF1456	0.67	-0.4
1,485,169	+		GFF1456	0.67	-0.8
1,485,172	-		GFF1456	0.67	+0.7
1,485,172	-		GFF1456	0.67	+0.6
1,485,172	-		GFF1456	0.67	+0.2
1,485,172	-		GFF1456	0.67	-0.3
1,485,174	+		GFF1456	0.67	-0.7
1,485,177	-		GFF1456	0.67	-0.8
1,485,177	-		GFF1456	0.67	+0.9
1,485,177	-		GFF1456	0.67	-0.7
1,485,177	-		GFF1456	0.67	-1.3
1,485,177	-		GFF1456	0.67	+1.0
1,485,177	-		GFF1456	0.67	+0.9
1,485,177	-		GFF1456	0.67	+0.5
1,485,177	-		GFF1456	0.67	-0.3
1,485,177	-		GFF1456	0.67	-0.4
1,485,177	-		GFF1456	0.67	-0.3
1,485,177	-		GFF1456	0.67	-0.8
1,485,177	-		GFF1456	0.67	-0.6
1,485,182	-		GFF1456	0.67	-0.7
1,485,201	+		GFF1456	0.68	-0.3
1,485,201	+		GFF1456	0.68	+1.0
1,485,209	-		GFF1456	0.69	-1.3
1,485,226	+		GFF1456	0.70	-1.4
1,485,228	-		GFF1456	0.70	+1.0
1,485,234	+		GFF1456	0.70	+0.7
1,485,238	-		GFF1456	0.70	-0.6
1,485,260	+		GFF1456	0.71	+0.6
1,485,263	-		GFF1456	0.72	+0.1
1,485,265	+		GFF1456	0.72	-0.5
1,485,267	-		GFF1456	0.72	+1.8
1,485,273	-		GFF1456	0.72	-0.9
1,485,273	-		GFF1456	0.72	-0.1
1,485,273	-		GFF1456	0.72	+0.4
1,485,289	+		GFF1456	0.73	+1.4
1,485,297	-		GFF1456	0.73	-0.9
1,485,303	-		GFF1456	0.74	-1.8
1,485,326	+		GFF1456	0.75	+0.1
1,485,326	+		GFF1456	0.75	+0.1
1,485,326	+		GFF1456	0.75	+0.6
1,485,326	+		GFF1456	0.75	+0.5
1,485,326	+		GFF1456	0.75	-0.7
1,485,334	-		GFF1456	0.75	+0.2
1,485,334	-		GFF1456	0.75	-1.4
1,485,334	-		GFF1456	0.75	-0.5
1,485,334	-		GFF1456	0.75	+0.5
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