Strain Fitness in Sphingobium sp. HT1-2 around GFF123

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
116,147	-				-0.5
116,177	-				+1.5
116,185	-				+0.3
116,185	-				-1.5
116,198	-				+1.2
116,202	+				-0.1
116,208	-				-0.3
116,208	-				-2.4
116,208	-				+0.2
116,210	-				+0.3
116,222	+				-0.3
116,283	+				+0.5
116,283	+				+0.5
116,283	+				-0.8
116,283	-				+0.6
116,291	-				+0.2
116,304	-				+1.1
116,308	-				-1.9
116,354	+		GFF122	0.15	+0.6
116,398	+		GFF122	0.21	-0.7
116,429	-		GFF122	0.25	+0.7
116,449	-		GFF122	0.28	-1.6
116,458	+		GFF122	0.29	-0.4
116,466	-		GFF122	0.30	+0.2
116,499	-		GFF122	0.35	-0.9
116,507	+		GFF122	0.36	-0.3
116,507	+		GFF122	0.36	-0.4
116,507	-		GFF122	0.36	+1.1
116,513	+		GFF122	0.37	+1.5
116,515	-		GFF122	0.37	+0.2
116,515	-		GFF122	0.37	+0.1
116,515	-		GFF122	0.37	-0.4
116,515	-		GFF122	0.37	+1.3
116,553	-		GFF122	0.42	+0.2
116,556	+		GFF122	0.43	-3.1
116,564	-		GFF122	0.44	+0.6
116,564	-		GFF122	0.44	-1.1
116,564	-		GFF122	0.44	+0.3
116,564	-		GFF122	0.44	-2.1
116,570	+		GFF122	0.44	-0.5
116,648	-		GFF122	0.55	-0.1
116,672	-		GFF122	0.58	-0.1
116,674	+		GFF122	0.59	-0.3
116,674	+		GFF122	0.59	+0.4
116,674	+		GFF122	0.59	-0.3
116,674	+		GFF122	0.59	-0.2
116,674	+		GFF122	0.59	-0.4
116,674	+		GFF122	0.59	+1.0
116,674	+		GFF122	0.59	-0.2
116,674	+		GFF122	0.59	+0.6
116,674	+		GFF122	0.59	-0.5
116,674	+		GFF122	0.59	-0.7
116,674	+		GFF122	0.59	+0.2
116,682	-		GFF122	0.60	+1.3
116,682	-		GFF122	0.60	-1.6
116,684	+		GFF122	0.60	-0.5
116,684	+		GFF122	0.60	+0.9
116,684	+		GFF122	0.60	-2.0
116,692	-		GFF122	0.61	+0.9
116,692	-		GFF122	0.61	+0.2
116,731	-		GFF122	0.66	-0.8
116,736	-		GFF122	0.67	-1.6
116,748	+		GFF122	0.69	+0.8
116,748	+		GFF122	0.69	+1.7
116,753	+		GFF122	0.69	-0.5
116,756	+		GFF122	0.70	+0.4
116,756	-		GFF122	0.70	-0.1
116,756	-		GFF122	0.70	-1.3
116,771	+		GFF122	0.72	-0.8
116,771	+		GFF122	0.72	+0.3
116,771	+		GFF122	0.72	-1.5
116,771	+		GFF122	0.72	-0.3
116,771	+		GFF122	0.72	-1.1
116,771	+		GFF122	0.72	-0.6
116,771	+		GFF122	0.72	+0.2
116,771	+		GFF122	0.72	+0.9
116,771	+		GFF122	0.72	+0.4
116,771	+		GFF122	0.72	+0.5
116,779	-		GFF122	0.73	+1.0
116,779	-		GFF122	0.73	-1.0
116,779	-		GFF122	0.73	+0.2
116,779	-		GFF122	0.73	+0.8
116,779	-		GFF122	0.73	+0.5
116,779	-		GFF122	0.73	-1.6
116,779	-		GFF122	0.73	-0.3
116,788	-		GFF122	0.74	+0.1
116,814	+		GFF122	0.78	-1.6
116,814	+		GFF122	0.78	+0.6
116,814	+		GFF122	0.78	-1.6
116,822	-		GFF122	0.79	+0.9
116,822	-		GFF122	0.79	+0.1
116,822	-		GFF122	0.79	+0.7
116,838	-		GFF122	0.81	-1.1
116,839	+		GFF122	0.81	+0.2
116,841	+		GFF122	0.81	-0.1
116,851	+		GFF122	0.83	-0.7
116,851	+		GFF122	0.83	-1.6
116,852	+		GFF122	0.83	+0.5
116,852	+		GFF122	0.83	+0.2
116,907	-				+0.6
116,922	-				-0.4
116,930	-				-0.6
116,932	+				+0.1
116,944	+				+1.5
116,949	+				+0.2
116,952	-				+1.0
116,985	+				+0.6
116,987	+				+0.2
117,033	+				-0.0
117,033	+				-0.6
117,041	-				+0.9
117,041	-				-0.7
117,042	-				+0.3
117,051	+				-1.1
117,093	+				-0.4
117,093	+				-2.1
117,093	+				+0.0
117,095	-				-0.5
117,096	-				-0.0
117,096	-				-0.3
117,101	+				-0.4
117,101	+				-0.3
117,101	-				+0.0
117,101	-				+0.1
117,101	-				-1.9
117,101	-				+0.9
117,112	+				+1.0
117,112	+				+0.1
117,112	+				+0.4
117,112	+				+0.0
117,112	+				+0.5
117,120	-				-0.6
117,120	-				-0.3
117,137	-				+1.0
117,143	+				-1.4
117,144	-				-1.7
117,144	-				+1.3
117,148	+				+0.2
117,154	+				-2.3
117,162	-				-0.5
117,162	-				-0.7
117,170	+				-0.3
117,170	+				+0.8
117,184	-				+1.6
117,251	+		GFF123	0.13	+0.6
117,251	+		GFF123	0.13	-0.6
117,259	-		GFF123	0.15	-0.5
117,259	-		GFF123	0.15	-1.8
117,281	-		GFF123	0.17	-0.4
117,288	+		GFF123	0.18	-1.7
117,306	-		GFF123	0.20	+0.0
117,325	-		GFF123	0.23	+0.9
117,342	+		GFF123	0.25	-0.4
117,355	+		GFF123	0.27	-0.9
117,360	+		GFF123	0.27	-0.9
117,360	-		GFF123	0.27	-2.0
117,388	+		GFF123	0.31	-0.3
117,391	-		GFF123	0.31	-1.1
117,393	+		GFF123	0.32	+0.3
117,396	-		GFF123	0.32	-0.8
117,396	-		GFF123	0.32	+0.1
117,411	+		GFF123	0.34	-0.1
117,411	+		GFF123	0.34	-0.1
117,411	+		GFF123	0.34	-0.5
117,411	+		GFF123	0.34	-0.3
117,411	+		GFF123	0.34	-0.3
117,411	+		GFF123	0.34	+0.7
117,419	-		GFF123	0.35	+1.2
117,419	-		GFF123	0.35	-1.4
117,419	-		GFF123	0.35	+0.5
117,419	-		GFF123	0.35	-0.3
117,419	-		GFF123	0.35	-0.5
117,429	-		GFF123	0.36	+0.3
117,429	-		GFF123	0.36	-1.2
117,469	+		GFF123	0.41	+1.5
117,505	-		GFF123	0.46	-0.5
117,532	+		GFF123	0.49	-0.8
117,576	-		GFF123	0.55	+0.1
117,585	-		GFF123	0.56	+0.4
117,598	-		GFF123	0.58	+0.8
117,598	-		GFF123	0.58	-1.6
117,615	+		GFF123	0.60	-3.0
117,615	+		GFF123	0.60	-0.3
117,615	+		GFF123	0.60	-1.1
117,615	+		GFF123	0.60	-0.1
117,623	-		GFF123	0.61	-0.1
117,623	-		GFF123	0.61	+0.7
117,623	-		GFF123	0.61	+0.1
117,623	-		GFF123	0.61	-1.6
117,623	-		GFF123	0.61	-0.3
117,623	-		GFF123	0.61	-2.1
117,623	-		GFF123	0.61	-1.1
117,623	-		GFF123	0.61	-0.3
117,623	-		GFF123	0.61	+0.6
117,632	+		GFF123	0.62	-0.2
117,640	-		GFF123	0.63	-0.6
117,652	-		GFF123	0.65	-2.3
117,664	-		GFF123	0.66	-0.3
117,682	-		GFF123	0.68	-0.3
117,684	+		GFF123	0.69	-1.7
117,689	-		GFF123	0.69	+0.9
117,745	+		GFF123	0.76	-0.6
117,745	+		GFF123	0.76	+0.2
117,745	+		GFF123	0.76	-0.1
117,745	+		GFF123	0.76	-0.5
117,750	+		GFF123	0.77	+0.2
117,750	+		GFF123	0.77	-0.7
117,750	+		GFF123	0.77	-2.4
117,750	+		GFF123	0.77	+0.6
117,753	-		GFF123	0.77	-0.4
117,753	-		GFF123	0.77	-0.4
117,753	-		GFF123	0.77	-1.5
117,753	-		GFF123	0.77	+1.1
117,753	-		GFF123	0.77	-1.4
117,758	-		GFF123	0.78	-1.8
117,758	-		GFF123	0.78	-0.5
117,758	-		GFF123	0.78	-0.1
117,758	-		GFF123	0.78	-0.1
117,763	-		GFF123	0.79	+0.4
117,764	+		GFF123	0.79	+0.6
117,764	+		GFF123	0.79	-1.6
117,772	-		GFF123	0.80	+0.7
117,772	-		GFF123	0.80	-1.8
117,772	-		GFF123	0.80	-1.4
117,809	-		GFF123	0.84	-0.5
117,810	+		GFF123	0.85	-0.5
117,810	+		GFF123	0.85	+0.4
117,810	+		GFF123	0.85	+0.3
117,821	+		GFF123	0.86	+0.2
117,821	+		GFF123	0.86	+0.5
117,823	+		GFF123	0.86	-1.4
117,831	+		GFF123	0.87	-2.5
117,838	+		GFF123	0.88	-2.0
117,839	-		GFF123	0.88	-2.1
117,848	+		GFF123	0.89	-0.3
117,905	+				+0.3
117,908	-				-0.7
117,908	-				+0.0
117,908	-				+1.7
117,979	-				-1.3
118,052	+				+0.2
118,052	+				-1.2
118,053	+				-2.4
118,060	-				-0.8
118,061	-				-0.7
118,061	-				+1.3
118,061	-				+1.8
118,061	-				+0.6
118,061	-				-0.2
118,069	-				-2.8
118,077	+				-0.4
118,077	+				-0.6
118,077	+				-0.8
118,085	-				-0.8
118,085	-				+0.0
118,085	-				-0.4
118,085	-				-0.1
118,100	+				+0.0
118,100	+				-1.8
118,100	+				+0.0
118,100	+				-0.6
118,108	-				+0.2
118,108	-				-1.7
118,108	-				-2.0
118,108	-				-0.1
118,115	-				+1.1
118,133	+		GFF124	0.11	-1.9
118,155	+		GFF124	0.14	-0.6
118,156	+		GFF124	0.14	+0.1
118,156	+		GFF124	0.14	-1.5
118,162	+		GFF124	0.14	-1.1
118,162	+		GFF124	0.14	+0.4
118,162	+		GFF124	0.14	+0.2
118,164	-		GFF124	0.15	-0.1
118,164	-		GFF124	0.15	-0.5
118,168	+		GFF124	0.15	-0.5
118,168	+		GFF124	0.15	+1.2
118,174	-		GFF124	0.16	-1.4
118,174	-		GFF124	0.16	-0.5
118,186	-		GFF124	0.17	-0.7
118,192	+		GFF124	0.18	-1.8
118,218	-		GFF124	0.21	+0.8
118,220	-		GFF124	0.21	+0.8
118,275	-		GFF124	0.27	-0.8
118,289	+		GFF124	0.29	+1.2
118,313	+		GFF124	0.31	+1.0
118,319	+		GFF124	0.32	+0.3
118,319	+		GFF124	0.32	-0.6
118,319	+		GFF124	0.32	+0.4
118,321	-		GFF124	0.32	+0.0
118,322	-		GFF124	0.32	+1.2
118,325	+		GFF124	0.33	-0.5
118,327	-		GFF124	0.33	-1.4
118,327	-		GFF124	0.33	-1.4
118,327	-		GFF124	0.33	-1.6
118,334	+		GFF124	0.34	-1.8
118,351	+		GFF124	0.36	-0.6
118,359	-		GFF124	0.36	-0.7
118,390	-		GFF124	0.40	+1.3
118,399	+		GFF124	0.41	+1.2
118,399	+		GFF124	0.41	+1.2
118,399	+		GFF124	0.41	+0.8
118,404	+		GFF124	0.41	+0.2
118,405	+		GFF124	0.42	-1.3
118,405	+		GFF124	0.42	+0.5
118,405	+		GFF124	0.42	-3.3
118,405	+		GFF124	0.42	+1.3
118,405	+		GFF124	0.42	+0.8
118,405	+		GFF124	0.42	-1.5
118,405	+		GFF124	0.42	-0.1
118,405	+		GFF124	0.42	-1.2
118,405	+		GFF124	0.42	-2.3
118,405	+		GFF124	0.42	+1.3
118,405	+		GFF124	0.42	+0.5
118,407	-		GFF124	0.42	-1.0
118,412	-		GFF124	0.42	+0.2
118,413	-		GFF124	0.42	-0.6
118,413	-		GFF124	0.42	+1.2
118,413	-		GFF124	0.42	-0.4
118,413	-		GFF124	0.42	-0.6
118,448	+		GFF124	0.46	-1.5
118,448	+		GFF124	0.46	+1.6
118,453	+		GFF124	0.47	-0.2
118,473	+		GFF124	0.49	+0.4
118,478	+		GFF124	0.50	+0.9
118,479	+		GFF124	0.50	-1.1
118,483	+		GFF124	0.50	-0.5
118,483	+		GFF124	0.50	+1.0
118,483	+		GFF124	0.50	+0.0
118,541	+		GFF124	0.57	-0.3
118,544	-		GFF124	0.57	-0.3
118,546	+		GFF124	0.57	-2.2
118,546	+		GFF124	0.57	-2.2
118,556	+		GFF124	0.58	-0.1
118,556	+		GFF124	0.58	+0.5
118,590	+		GFF124	0.62	-0.3
118,598	-		GFF124	0.63	+1.0
118,598	-		GFF124	0.63	-1.6
118,626	+		GFF124	0.66	-1.4
118,626	+		GFF124	0.66	-0.2
118,626	+		GFF124	0.66	+1.0
118,634	-		GFF124	0.67	-2.0
118,669	+		GFF124	0.71	+0.2
118,674	+		GFF124	0.72	+0.6
118,674	+		GFF124	0.72	-0.2
118,674	+		GFF124	0.72	-1.6
118,674	+		GFF124	0.72	-2.0
118,674	+		GFF124	0.72	-1.3
118,674	+		GFF124	0.72	-2.0
118,674	+		GFF124	0.72	-0.1
118,674	+		GFF124	0.72	-0.3
118,674	+		GFF124	0.72	-0.1
118,674	+		GFF124	0.72	-0.1
118,674	+		GFF124	0.72	-1.1
118,674	+		GFF124	0.72	-0.6
118,674	+		GFF124	0.72	-1.7
118,674	+		GFF124	0.72	-0.7
118,682	-		GFF124	0.72	+0.4
118,682	-		GFF124	0.72	-0.4
118,682	-		GFF124	0.72	-0.6
118,682	-		GFF124	0.72	-0.5
118,682	-		GFF124	0.72	-0.3
118,682	-		GFF124	0.72	+1.1
118,682	-		GFF124	0.72	+0.5
118,682	-		GFF124	0.72	-0.7
118,682	-		GFF124	0.72	+0.9
118,682	-		GFF124	0.72	-1.2
118,682	-		GFF124	0.72	+0.2
118,682	-		GFF124	0.72	+0.2
118,687	-		GFF124	0.73	-0.9
118,687	-		GFF124	0.73	-1.3
118,710	+		GFF124	0.76	+1.0
118,715	-		GFF124	0.76	-1.3
118,743	+		GFF124	0.79	+0.1
118,775	+		GFF124	0.83	-1.8
118,783	-		GFF124	0.84	-1.6
118,783	-		GFF124	0.84	+0.5
118,783	-		GFF124	0.84	+0.5
118,783	-		GFF124	0.84	-0.3
118,783	-		GFF124	0.84	-1.2
118,887	+				+0.1
118,906	+				-2.1
118,917	+				-1.8
118,917	+				-1.6
118,924	+				+0.0