Strain Fitness in Sphingobium sp. HT1-2 around GFF1068

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,074,403	+		GFF1067	0.34	+0.4
1,074,403	+		GFF1067	0.34	-1.5
1,074,403	+		GFF1067	0.34	-0.4
1,074,403	+		GFF1067	0.34	-0.6
1,074,411	-		GFF1067	0.35	+0.2
1,074,443	+		GFF1067	0.37	-0.2
1,074,451	-		GFF1067	0.37	-1.8
1,074,459	+		GFF1067	0.38	-0.6
1,074,478	-		GFF1067	0.39	-0.8
1,074,478	-		GFF1067	0.39	+0.4
1,074,486	+		GFF1067	0.40	-0.7
1,074,486	+		GFF1067	0.40	+0.1
1,074,494	-		GFF1067	0.40	-0.3
1,074,499	+		GFF1067	0.41	+0.3
1,074,507	-		GFF1067	0.41	-0.7
1,074,513	-		GFF1067	0.42	-1.6
1,074,522	+		GFF1067	0.42	+0.3
1,074,522	+		GFF1067	0.42	-0.1
1,074,529	+		GFF1067	0.43	-1.7
1,074,537	-		GFF1067	0.43	-0.0
1,074,568	+		GFF1067	0.45	-0.7
1,074,573	+		GFF1067	0.46	+1.7
1,074,576	-		GFF1067	0.46	+0.1
1,074,581	-		GFF1067	0.46	-1.3
1,074,593	+		GFF1067	0.47	-0.9
1,074,593	+		GFF1067	0.47	-0.1
1,074,593	+		GFF1067	0.47	-0.7
1,074,597	-		GFF1067	0.47	-0.4
1,074,598	+		GFF1067	0.47	-0.6
1,074,598	+		GFF1067	0.47	-0.8
1,074,601	-		GFF1067	0.48	-1.4
1,074,601	-		GFF1067	0.48	-1.4
1,074,606	-		GFF1067	0.48	-0.9
1,074,606	-		GFF1067	0.48	-0.7
1,074,606	-		GFF1067	0.48	-0.4
1,074,622	+		GFF1067	0.49	-0.6
1,074,650	-		GFF1067	0.51	+0.2
1,074,656	+		GFF1067	0.51	-1.1
1,074,660	-		GFF1067	0.52	+1.2
1,074,671	-		GFF1067	0.52	-2.1
1,074,675	-		GFF1067	0.53	-2.3
1,074,685	-		GFF1067	0.53	+0.4
1,074,690	-		GFF1067	0.54	-0.6
1,074,728	-		GFF1067	0.56	+0.2
1,074,729	-		GFF1067	0.56	-0.6
1,074,737	+		GFF1067	0.57	+0.3
1,074,745	-		GFF1067	0.57	-1.8
1,074,775	+		GFF1067	0.59	+0.5
1,074,779	-		GFF1067	0.60	-2.1
1,074,804	+		GFF1067	0.61	-1.6
1,074,804	+		GFF1067	0.61	+0.3
1,074,812	-		GFF1067	0.62	+0.8
1,074,821	+		GFF1067	0.63	+0.7
1,074,896	-		GFF1067	0.68	-1.6
1,074,903	-		GFF1067	0.68	+0.7
1,074,903	-		GFF1067	0.68	+0.3
1,074,914	+		GFF1067	0.69	+0.1
1,074,986	+		GFF1067	0.74	-0.0
1,074,986	+		GFF1067	0.74	-0.5
1,074,986	+		GFF1067	0.74	-2.6
1,074,989	-		GFF1067	0.74	+0.7
1,074,994	-		GFF1067	0.74	-2.5
1,075,014	-		GFF1067	0.76	-1.3
1,075,031	+		GFF1067	0.77	+1.2
1,075,041	+		GFF1067	0.78	-0.4
1,075,042	+		GFF1067	0.78	-1.6
1,075,042	+		GFF1067	0.78	-0.5
1,075,042	+		GFF1067	0.78	-1.7
1,075,047	-		GFF1067	0.78	+1.8
1,075,049	+		GFF1067	0.78	-0.1
1,075,050	-		GFF1067	0.78	+0.4
1,075,050	-		GFF1067	0.78	-0.7
1,075,052	-		GFF1067	0.78	+0.3
1,075,064	+		GFF1067	0.79	-0.3
1,075,070	+		GFF1067	0.79	-1.0
1,075,086	+		GFF1067	0.81	+0.2
1,075,160	-		GFF1067	0.86	+0.5
1,075,176	+		GFF1067	0.87	+1.1
1,075,176	+		GFF1067	0.87	-1.2
1,075,176	+		GFF1067	0.87	-1.9
1,075,184	-		GFF1067	0.87	-0.0
1,075,184	-		GFF1067	0.87	+0.3
1,075,189	-		GFF1067	0.88	+0.1
1,075,194	-		GFF1067	0.88	-1.6
1,075,194	-		GFF1067	0.88	+0.4
1,075,200	+		GFF1067	0.88	-1.2
1,075,209	+		GFF1067	0.89	+0.2
1,075,247	-				-1.7
1,075,248	+				-2.2
1,075,304	-				+0.4
1,075,305	+				+1.0
1,075,313	+				+0.6
1,075,313	-				-1.5
1,075,340	+				+1.0
1,075,340	+				+1.1
1,075,345	+				-0.0
1,075,348	-				+0.6
1,075,350	+				-2.7
1,075,358	-				-0.4
1,075,358	-				-1.9
1,075,382	+				-0.8
1,075,387	+				+0.4
1,075,387	+				-1.1
1,075,395	-				-1.6
1,075,395	-				-0.5
1,075,397	+				+0.3
1,075,406	-				+0.6
1,076,275	+				-1.9
1,076,275	+				+0.7
1,076,283	-				-0.7
1,076,296	-				-1.1
1,076,305	-				+0.1
1,076,348	-				-0.6
1,076,362	-				-0.3
1,076,372	-				-0.7
1,076,380	+				-1.0
1,076,380	+				+0.3
1,076,383	-				-1.6
1,076,388	-				-2.1
1,076,395	+				-1.2
1,076,418	+				-2.4
1,076,418	-				-1.3
1,076,419	+				-1.4
1,076,428	-				+0.6
1,076,433	+				-2.2
1,076,436	-				+1.2
1,076,470	+		GFF1069	0.13	-1.0
1,076,472	+		GFF1069	0.14	+1.0
1,076,476	+		GFF1069	0.14	-0.3
1,076,480	-		GFF1069	0.15	-1.8
1,076,570	-		GFF1069	0.27	-0.5
1,076,576	-		GFF1069	0.27	+0.5
1,076,584	+		GFF1069	0.29	-0.7
1,076,587	-		GFF1069	0.29	-0.4
1,076,592	-		GFF1069	0.30	-0.8
1,076,592	-		GFF1069	0.30	-1.0
1,076,594	+		GFF1069	0.30	-1.1
1,076,594	+		GFF1069	0.30	-1.1
1,076,594	+		GFF1069	0.30	+0.1
1,076,599	+		GFF1069	0.31	-1.0
1,076,602	-		GFF1069	0.31	-0.2
1,076,602	-		GFF1069	0.31	+1.0
1,076,602	-		GFF1069	0.31	+0.3
1,076,602	-		GFF1069	0.31	-0.7
1,076,602	-		GFF1069	0.31	-0.4
1,076,607	-		GFF1069	0.32	-1.4
1,076,607	-		GFF1069	0.32	-1.4
1,076,607	-		GFF1069	0.32	-1.9
1,076,607	-		GFF1069	0.32	-0.3
1,076,612	-		GFF1069	0.32	-1.7
1,076,612	-		GFF1069	0.32	+0.1
1,076,620	-		GFF1069	0.33	+0.2
1,076,652	+		GFF1069	0.38	-0.2
1,076,652	+		GFF1069	0.38	-1.3
1,076,661	+		GFF1069	0.39	-0.8
1,076,661	+		GFF1069	0.39	-2.1
1,076,669	-		GFF1069	0.40	+0.2
1,076,702	+		GFF1069	0.44	-1.0
1,076,707	+		GFF1069	0.45	+0.7
1,076,722	+		GFF1069	0.47	-0.2
1,076,722	+		GFF1069	0.47	-0.2
1,076,722	+		GFF1069	0.47	-0.1
1,076,722	+		GFF1069	0.47	-1.3
1,076,730	-		GFF1069	0.48	-0.3
1,076,730	-		GFF1069	0.48	+0.7
1,076,748	-		GFF1069	0.50	-0.6
1,076,748	-		GFF1069	0.50	-0.6
1,076,751	+		GFF1069	0.51	-0.6
1,076,751	+		GFF1069	0.51	-0.8
1,076,751	+		GFF1069	0.51	-0.7
1,076,751	+		GFF1069	0.51	-1.8
1,076,759	-		GFF1069	0.52	+0.6
1,076,789	-		GFF1069	0.56	+0.1
1,076,807	+		GFF1069	0.58	+1.1
1,076,807	+		GFF1069	0.58	-1.3
1,076,815	-		GFF1069	0.59	+0.2
1,076,835	+		GFF1069	0.62	-0.7
1,076,849	-		GFF1069	0.64	-0.5
1,076,851	+		GFF1069	0.64	-0.4
1,076,853	+		GFF1069	0.65	-0.4
1,076,859	+		GFF1069	0.65	-1.6
1,076,859	+		GFF1069	0.65	-0.6
1,076,861	-		GFF1069	0.66	-0.4
1,076,861	-		GFF1069	0.66	-0.8
1,076,867	-		GFF1069	0.66	-1.1
1,076,872	-		GFF1069	0.67	-0.2
1,076,872	-		GFF1069	0.67	-0.5
1,076,872	-		GFF1069	0.67	+0.5
1,076,878	+		GFF1069	0.68	+0.1
1,076,878	+		GFF1069	0.68	+0.7
1,076,883	+		GFF1069	0.69	-0.5
1,076,883	+		GFF1069	0.69	-0.5
1,076,886	-		GFF1069	0.69	+0.2
1,076,886	-		GFF1069	0.69	-1.2
1,076,909	-		GFF1069	0.72	-1.2
1,076,916	+		GFF1069	0.73	+2.0
1,076,924	-		GFF1069	0.74	-0.4
1,076,924	-		GFF1069	0.74	-0.8
1,076,924	-		GFF1069	0.74	-1.3
1,076,978	-		GFF1069	0.81	+0.2
1,077,008	-		GFF1069	0.85	-0.2
1,077,027	-		GFF1069	0.88	-1.3
1,077,030	+		GFF1069	0.88	+0.1
1,077,049	-				+0.1
1,077,049	-				+0.1
1,077,062	-				-2.5
1,077,089	+				-1.0
1,077,089	+				+1.0
1,077,089	+				-0.7
1,077,097	-				-1.6
1,077,112	+				+1.2
1,077,112	+				-0.9
1,077,120	-				-0.4
1,077,147	+				+1.6
1,077,147	+				-1.8
1,077,152	+				-1.8
1,077,157	+				-1.1
1,077,157	+				-1.7
1,077,160	-				+0.8
1,077,165	-				-1.6
1,077,165	-				-1.4
1,077,165	-				-0.9
1,077,204	+				+1.1
1,077,204	+				-1.1
1,077,204	+				+0.0
1,077,204	+				+0.4
1,077,204	+				+0.1
1,077,204	+				-0.7
1,077,204	+				+0.3
1,077,204	+				-0.6
1,077,204	+				+0.6
1,077,210	+				-0.0
1,077,212	-				+0.3
1,077,218	-				+0.4
1,077,224	+				-0.0