Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06091

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06090 and MPMX19_06091 are separated by 478 nucleotidesMPMX19_06091 and MPMX19_06092 are separated by 82 nucleotides MPMX19_06090: MPMX19_06090 - Pyruvate dehydrogenase complex repressor, at 268,828 to 269,598 _06090 MPMX19_06091: MPMX19_06091 - Glycolate permease GlcA, at 270,077 to 271,753 _06091 MPMX19_06092: MPMX19_06092 - hypothetical protein, at 271,836 to 274,697 _06092 Position (kb) 270 271 272Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 269.135 kb on + strand, within MPMX19_06090at 269.287 kb on + strand, within MPMX19_06090at 269.287 kb on + strand, within MPMX19_06090at 269.310 kb on - strand, within MPMX19_06090at 269.310 kb on - strand, within MPMX19_06090at 269.642 kb on - strandat 269.642 kb on - strandat 269.642 kb on - strandat 269.642 kb on - strandat 269.642 kb on - strandat 269.642 kb on - strandat 269.854 kb on + strandat 269.854 kb on + strandat 269.855 kb on - strandat 269.855 kb on - strandat 269.855 kb on - strandat 269.900 kb on + strandat 269.900 kb on + strandat 269.900 kb on + strandat 269.900 kb on + strandat 269.901 kb on - strandat 269.901 kb on - strandat 269.901 kb on - strandat 269.901 kb on - strandat 269.901 kb on - strandat 269.901 kb on - strandat 269.901 kb on - strandat 270.095 kb on + strandat 270.095 kb on + strandat 270.096 kb on - strandat 270.181 kb on + strandat 270.181 kb on + strandat 270.181 kb on + strandat 270.181 kb on + strandat 270.182 kb on - strandat 270.182 kb on - strandat 270.182 kb on - strandat 270.182 kb on - strandat 270.182 kb on - strandat 270.182 kb on - strandat 270.182 kb on - strandat 270.182 kb on - strandat 270.182 kb on - strandat 270.182 kb on - strandat 270.296 kb on + strand, within MPMX19_06091at 270.296 kb on + strand, within MPMX19_06091at 270.296 kb on + strand, within MPMX19_06091at 270.296 kb on + strand, within MPMX19_06091at 270.297 kb on - strand, within MPMX19_06091at 270.344 kb on + strand, within MPMX19_06091at 270.344 kb on + strand, within MPMX19_06091at 270.344 kb on + strand, within MPMX19_06091at 270.344 kb on + strand, within MPMX19_06091at 270.344 kb on + strand, within MPMX19_06091at 270.345 kb on - strand, within MPMX19_06091at 270.345 kb on - strand, within MPMX19_06091at 270.788 kb on + strand, within MPMX19_06091at 270.788 kb on + strand, within MPMX19_06091at 270.788 kb on + strand, within MPMX19_06091at 270.789 kb on - strand, within MPMX19_06091at 270.789 kb on - strand, within MPMX19_06091at 270.789 kb on - strand, within MPMX19_06091at 270.789 kb on - strand, within MPMX19_06091at 270.803 kb on + strand, within MPMX19_06091at 270.803 kb on + strand, within MPMX19_06091at 270.803 kb on + strand, within MPMX19_06091at 270.803 kb on + strand, within MPMX19_06091at 270.804 kb on - strand, within MPMX19_06091at 270.804 kb on - strand, within MPMX19_06091at 270.804 kb on - strand, within MPMX19_06091at 270.804 kb on - strand, within MPMX19_06091at 270.951 kb on + strand, within MPMX19_06091at 270.951 kb on + strand, within MPMX19_06091at 270.951 kb on + strand, within MPMX19_06091at 270.951 kb on + strand, within MPMX19_06091at 270.951 kb on + strand, within MPMX19_06091at 270.951 kb on + strand, within MPMX19_06091at 270.951 kb on + strand, within MPMX19_06091at 270.951 kb on + strand, within MPMX19_06091at 270.951 kb on + strand, within MPMX19_06091at 270.952 kb on - strand, within MPMX19_06091at 270.952 kb on - strand, within MPMX19_06091at 270.952 kb on - strand, within MPMX19_06091at 270.952 kb on - strand, within MPMX19_06091at 270.952 kb on - strand, within MPMX19_06091at 270.952 kb on - strand, within MPMX19_06091at 270.952 kb on - strand, within MPMX19_06091at 270.952 kb on - strand, within MPMX19_06091at 270.952 kb on - strand, within MPMX19_06091at 270.952 kb on - strand, within MPMX19_06091at 270.980 kb on + strand, within MPMX19_06091at 270.981 kb on - strand, within MPMX19_06091at 270.981 kb on - strand, within MPMX19_06091at 270.981 kb on - strand, within MPMX19_06091at 271.175 kb on + strand, within MPMX19_06091at 271.175 kb on + strand, within MPMX19_06091at 271.175 kb on + strand, within MPMX19_06091at 271.175 kb on + strand, within MPMX19_06091at 271.175 kb on + strand, within MPMX19_06091at 271.176 kb on - strand, within MPMX19_06091at 271.176 kb on - strand, within MPMX19_06091at 271.176 kb on - strand, within MPMX19_06091at 271.176 kb on - strand, within MPMX19_06091at 271.176 kb on - strand, within MPMX19_06091at 271.176 kb on - strand, within MPMX19_06091at 271.250 kb on + strand, within MPMX19_06091at 271.251 kb on - strand, within MPMX19_06091at 271.251 kb on - strand, within MPMX19_06091at 271.277 kb on + strand, within MPMX19_06091at 271.278 kb on - strand, within MPMX19_06091at 271.278 kb on - strand, within MPMX19_06091at 271.292 kb on + strand, within MPMX19_06091at 271.292 kb on + strand, within MPMX19_06091at 271.293 kb on - strand, within MPMX19_06091at 271.293 kb on - strand, within MPMX19_06091at 271.293 kb on - strand, within MPMX19_06091at 271.293 kb on - strand, within MPMX19_06091at 271.343 kb on + strand, within MPMX19_06091at 271.343 kb on + strand, within MPMX19_06091at 271.344 kb on - strand, within MPMX19_06091at 271.344 kb on - strand, within MPMX19_06091at 271.344 kb on - strand, within MPMX19_06091at 271.344 kb on - strand, within MPMX19_06091at 271.409 kb on + strand, within MPMX19_06091at 271.715 kb on + strandat 271.715 kb on + strandat 271.715 kb on + strandat 271.715 kb on + strandat 271.715 kb on + strandat 271.715 kb on + strandat 271.715 kb on + strandat 271.715 kb on + strandat 271.715 kb on + strandat 271.716 kb on - strandat 271.716 kb on - strandat 271.716 kb on - strandat 271.716 kb on - strandat 271.716 kb on - strandat 271.716 kb on - strandat 271.716 kb on - strandat 271.716 kb on - strandat 271.716 kb on - strandat 271.851 kb on + strandat 271.851 kb on + strandat 271.851 kb on + strandat 271.851 kb on + strandat 271.852 kb on - strandat 271.852 kb on - strandat 271.852 kb on - strandat 271.852 kb on - strandat 271.929 kb on + strandat 271.930 kb on - strandat 271.950 kb on + strandat 271.951 kb on - strandat 272.316 kb on + strand, within MPMX19_06092at 272.316 kb on + strand, within MPMX19_06092at 272.317 kb on - strand, within MPMX19_06092at 272.317 kb on - strand, within MPMX19_06092at 272.517 kb on + strand, within MPMX19_06092at 272.541 kb on + strand, within MPMX19_06092at 272.541 kb on + strand, within MPMX19_06092at 272.541 kb on + strand, within MPMX19_06092at 272.542 kb on - strand, within MPMX19_06092at 272.542 kb on - strand, within MPMX19_06092at 272.542 kb on - strand, within MPMX19_06092at 272.542 kb on - strand, within MPMX19_06092

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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269,135 + MPMX19_06090 0.40 +0.8
269,287 + MPMX19_06090 0.60 -2.3
269,287 + MPMX19_06090 0.60 +1.0
269,310 - MPMX19_06090 0.63 -1.5
269,310 - MPMX19_06090 0.63 -1.1
269,642 - +0.4
269,642 - -0.2
269,642 - +1.3
269,642 - +0.2
269,642 - -1.5
269,642 - +0.2
269,854 + -1.7
269,854 + -1.3
269,855 - -1.7
269,855 - -2.3
269,855 - -0.3
269,900 + +0.3
269,900 + -0.0
269,900 + +0.3
269,900 + +0.1
269,901 - -0.6
269,901 - -2.9
269,901 - -0.7
269,901 - +0.7
269,901 - -1.9
269,901 - +1.3
269,901 - -0.9
270,095 + +0.1
270,095 + -0.2
270,096 - -0.2
270,181 + -0.7
270,181 + +0.6
270,181 + -1.2
270,181 + -1.1
270,182 - -0.4
270,182 - +0.3
270,182 - -1.2
270,182 - -1.6
270,182 - -1.4
270,182 - +0.6
270,182 - +0.2
270,182 - +1.8
270,182 - -1.3
270,182 - -0.7
270,296 + MPMX19_06091 0.13 -1.8
270,296 + MPMX19_06091 0.13 -0.9
270,296 + MPMX19_06091 0.13 -0.4
270,296 + MPMX19_06091 0.13 -1.4
270,297 - MPMX19_06091 0.13 -0.7
270,344 + MPMX19_06091 0.16 -0.7
270,344 + MPMX19_06091 0.16 +2.4
270,344 + MPMX19_06091 0.16 -0.7
270,344 + MPMX19_06091 0.16 -2.3
270,344 + MPMX19_06091 0.16 +1.1
270,345 - MPMX19_06091 0.16 -0.3
270,345 - MPMX19_06091 0.16 -0.2
270,788 + MPMX19_06091 0.42 +0.6
270,788 + MPMX19_06091 0.42 -1.9
270,788 + MPMX19_06091 0.42 -0.8
270,789 - MPMX19_06091 0.42 -0.6
270,789 - MPMX19_06091 0.42 -0.7
270,789 - MPMX19_06091 0.42 -0.5
270,789 - MPMX19_06091 0.42 +0.1
270,803 + MPMX19_06091 0.43 -1.0
270,803 + MPMX19_06091 0.43 -0.2
270,803 + MPMX19_06091 0.43 +0.6
270,803 + MPMX19_06091 0.43 -0.9
270,804 - MPMX19_06091 0.43 -2.3
270,804 - MPMX19_06091 0.43 -0.7
270,804 - MPMX19_06091 0.43 +1.1
270,804 - MPMX19_06091 0.43 -1.5
270,951 + MPMX19_06091 0.52 -1.8
270,951 + MPMX19_06091 0.52 +2.0
270,951 + MPMX19_06091 0.52 +0.8
270,951 + MPMX19_06091 0.52 -1.7
270,951 + MPMX19_06091 0.52 -0.3
270,951 + MPMX19_06091 0.52 -0.9
270,951 + MPMX19_06091 0.52 +0.8
270,951 + MPMX19_06091 0.52 -1.5
270,951 + MPMX19_06091 0.52 -1.7
270,952 - MPMX19_06091 0.52 +0.7
270,952 - MPMX19_06091 0.52 -1.4
270,952 - MPMX19_06091 0.52 -0.4
270,952 - MPMX19_06091 0.52 -1.1
270,952 - MPMX19_06091 0.52 +0.4
270,952 - MPMX19_06091 0.52 +0.1
270,952 - MPMX19_06091 0.52 -1.1
270,952 - MPMX19_06091 0.52 -0.6
270,952 - MPMX19_06091 0.52 +0.7
270,952 - MPMX19_06091 0.52 -2.3
270,980 + MPMX19_06091 0.54 -1.2
270,981 - MPMX19_06091 0.54 -0.7
270,981 - MPMX19_06091 0.54 +0.6
270,981 - MPMX19_06091 0.54 -0.4
271,175 + MPMX19_06091 0.65 +0.4
271,175 + MPMX19_06091 0.65 -0.5
271,175 + MPMX19_06091 0.65 -1.1
271,175 + MPMX19_06091 0.65 +0.3
271,175 + MPMX19_06091 0.65 +0.8
271,176 - MPMX19_06091 0.66 -0.3
271,176 - MPMX19_06091 0.66 -0.5
271,176 - MPMX19_06091 0.66 -0.2
271,176 - MPMX19_06091 0.66 -1.0
271,176 - MPMX19_06091 0.66 -1.0
271,176 - MPMX19_06091 0.66 -0.3
271,250 + MPMX19_06091 0.70 -0.2
271,251 - MPMX19_06091 0.70 -0.5
271,251 - MPMX19_06091 0.70 +0.4
271,277 + MPMX19_06091 0.72 -0.7
271,278 - MPMX19_06091 0.72 +0.3
271,278 - MPMX19_06091 0.72 -0.6
271,292 + MPMX19_06091 0.72 -1.0
271,292 + MPMX19_06091 0.72 -1.2
271,293 - MPMX19_06091 0.73 +0.1
271,293 - MPMX19_06091 0.73 -0.3
271,293 - MPMX19_06091 0.73 -0.3
271,293 - MPMX19_06091 0.73 -1.6
271,343 + MPMX19_06091 0.75 -0.6
271,343 + MPMX19_06091 0.75 +0.6
271,344 - MPMX19_06091 0.76 -2.4
271,344 - MPMX19_06091 0.76 +0.3
271,344 - MPMX19_06091 0.76 +0.9
271,344 - MPMX19_06091 0.76 -1.0
271,409 + MPMX19_06091 0.79 -1.5
271,715 + +0.4
271,715 + -1.0
271,715 + +0.7
271,715 + +0.8
271,715 + +0.1
271,715 + -0.2
271,715 + +0.3
271,715 + -2.2
271,715 + -2.0
271,716 - -1.5
271,716 - -0.2
271,716 - +0.5
271,716 - -0.6
271,716 - -0.2
271,716 - +0.6
271,716 - -0.0
271,716 - -0.4
271,716 - -0.0
271,851 + -0.5
271,851 + +0.8
271,851 + +0.1
271,851 + +0.6
271,852 - -1.6
271,852 - -0.0
271,852 - -0.3
271,852 - -1.3
271,929 + +0.8
271,930 - +0.4
271,950 + -1.0
271,951 - +0.0
272,316 + MPMX19_06092 0.17 -0.1
272,316 + MPMX19_06092 0.17 -0.0
272,317 - MPMX19_06092 0.17 +0.0
272,317 - MPMX19_06092 0.17 +0.5
272,517 + MPMX19_06092 0.24 -2.3
272,541 + MPMX19_06092 0.25 +1.0
272,541 + MPMX19_06092 0.25 +0.4
272,541 + MPMX19_06092 0.25 +0.3
272,542 - MPMX19_06092 0.25 -0.2
272,542 - MPMX19_06092 0.25 -0.7
272,542 - MPMX19_06092 0.25 -0.3
272,542 - MPMX19_06092 0.25 -0.4

Or see this region's nucleotide sequence