Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06048

Experiment: NL-CCM, start OD=0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_06047 and MPMX19_06048 are separated by 336 nucleotidesMPMX19_06048 and MPMX19_06049 are separated by 102 nucleotidesMPMX19_06049 and MPMX19_06050 are separated by 293 nucleotides MPMX19_06047: MPMX19_06047 - hypothetical protein, at 207,696 to 208,868 _06047 MPMX19_06048: MPMX19_06048 - hypothetical protein, at 209,205 to 211,841 _06048 MPMX19_06049: MPMX19_06049 - hypothetical protein, at 211,944 to 212,135 _06049 MPMX19_06050: MPMX19_06050 - Phosphoenolpyruvate carboxylase, at 212,429 to 215,200 _06050 Position (kb) 209 210 211 212Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 208.205 kb on - strand, within MPMX19_06047at 208.205 kb on - strand, within MPMX19_06047at 208.205 kb on - strand, within MPMX19_06047at 208.213 kb on + strand, within MPMX19_06047at 208.213 kb on + strand, within MPMX19_06047at 208.213 kb on + strand, within MPMX19_06047at 208.213 kb on + strand, within MPMX19_06047at 208.213 kb on + strand, within MPMX19_06047at 208.213 kb on + strand, within MPMX19_06047at 208.213 kb on + strand, within MPMX19_06047at 208.213 kb on + strand, within MPMX19_06047at 208.214 kb on - strand, within MPMX19_06047at 208.214 kb on - strand, within MPMX19_06047at 208.214 kb on - strand, within MPMX19_06047at 208.214 kb on - strand, within MPMX19_06047at 208.342 kb on + strand, within MPMX19_06047at 208.342 kb on + strand, within MPMX19_06047at 208.343 kb on - strand, within MPMX19_06047at 208.343 kb on - strand, within MPMX19_06047at 208.905 kb on + strandat 208.906 kb on - strandat 208.906 kb on - strandat 208.906 kb on - strandat 208.906 kb on - strandat 208.964 kb on - strandat 209.012 kb on + strandat 209.012 kb on + strandat 209.012 kb on + strandat 209.013 kb on - strandat 209.013 kb on - strandat 209.048 kb on + strandat 209.048 kb on + strandat 209.048 kb on + strandat 209.048 kb on + strandat 209.048 kb on + strandat 209.049 kb on - strandat 209.049 kb on - strandat 209.049 kb on - strandat 209.049 kb on - strandat 209.049 kb on - strandat 209.049 kb on - strandat 209.074 kb on - strandat 209.204 kb on + strandat 209.204 kb on + strandat 209.204 kb on + strandat 209.204 kb on + strandat 209.204 kb on + strandat 209.204 kb on + strandat 209.204 kb on + strandat 209.204 kb on + strandat 209.204 kb on + strandat 209.205 kb on - strandat 209.205 kb on - strandat 209.205 kb on - strandat 209.205 kb on - strandat 209.205 kb on - strandat 209.205 kb on - strandat 209.205 kb on - strandat 209.205 kb on - strandat 209.205 kb on - strandat 209.205 kb on - strandat 209.205 kb on - strandat 209.512 kb on - strand, within MPMX19_06048at 209.512 kb on - strand, within MPMX19_06048at 209.512 kb on - strand, within MPMX19_06048at 209.512 kb on - strand, within MPMX19_06048at 209.512 kb on - strand, within MPMX19_06048at 209.512 kb on - strand, within MPMX19_06048at 209.718 kb on + strand, within MPMX19_06048at 209.718 kb on + strand, within MPMX19_06048at 209.718 kb on + strand, within MPMX19_06048at 209.718 kb on + strand, within MPMX19_06048at 209.719 kb on - strand, within MPMX19_06048at 209.719 kb on - strand, within MPMX19_06048at 209.719 kb on - strand, within MPMX19_06048at 209.719 kb on - strand, within MPMX19_06048at 209.719 kb on - strand, within MPMX19_06048at 209.859 kb on + strand, within MPMX19_06048at 209.859 kb on + strand, within MPMX19_06048at 209.859 kb on + strand, within MPMX19_06048at 209.859 kb on + strand, within MPMX19_06048at 209.859 kb on + strand, within MPMX19_06048at 209.859 kb on + strand, within MPMX19_06048at 209.859 kb on + strand, within MPMX19_06048at 209.859 kb on + strand, within MPMX19_06048at 209.859 kb on + strand, within MPMX19_06048at 209.859 kb on + strand, within MPMX19_06048at 209.859 kb on + strand, within MPMX19_06048at 209.859 kb on + strand, within MPMX19_06048at 209.859 kb on + strand, within MPMX19_06048at 209.859 kb on + strand, within MPMX19_06048at 209.860 kb on - strand, within MPMX19_06048at 209.860 kb on - strand, within MPMX19_06048at 209.860 kb on - strand, within MPMX19_06048at 209.860 kb on - strand, within MPMX19_06048at 209.860 kb on - strand, within MPMX19_06048at 209.860 kb on - strand, within MPMX19_06048at 209.860 kb on - strand, within MPMX19_06048at 209.860 kb on - strand, within MPMX19_06048at 209.860 kb on - strand, within MPMX19_06048at 209.955 kb on + strand, within MPMX19_06048at 209.955 kb on + strand, within MPMX19_06048at 209.955 kb on + strand, within MPMX19_06048at 209.955 kb on + strand, within MPMX19_06048at 209.955 kb on + strand, within MPMX19_06048at 209.955 kb on + strand, within MPMX19_06048at 209.955 kb on + strand, within MPMX19_06048at 209.956 kb on - strand, within MPMX19_06048at 209.956 kb on - strand, within MPMX19_06048at 209.956 kb on - strand, within MPMX19_06048at 209.956 kb on - strand, within MPMX19_06048at 209.956 kb on - strand, within MPMX19_06048at 209.956 kb on - strand, within MPMX19_06048at 209.956 kb on - strand, within MPMX19_06048at 209.956 kb on - strand, within MPMX19_06048at 209.956 kb on - strand, within MPMX19_06048at 209.956 kb on - strand, within MPMX19_06048at 209.956 kb on - strand, within MPMX19_06048at 210.318 kb on + strand, within MPMX19_06048at 210.318 kb on + strand, within MPMX19_06048at 210.318 kb on + strand, within MPMX19_06048at 210.318 kb on + strand, within MPMX19_06048at 210.318 kb on + strand, within MPMX19_06048at 210.318 kb on + strand, within MPMX19_06048at 210.318 kb on + strand, within MPMX19_06048at 210.318 kb on + strand, within MPMX19_06048at 210.318 kb on + strand, within MPMX19_06048at 210.318 kb on + strand, within MPMX19_06048at 210.318 kb on + strand, within MPMX19_06048at 210.318 kb on + strand, within MPMX19_06048at 210.318 kb on + strand, within MPMX19_06048at 210.318 kb on + strand, within MPMX19_06048at 210.318 kb on + strand, within MPMX19_06048at 210.318 kb on + strand, within MPMX19_06048at 210.318 kb on + strand, within MPMX19_06048at 210.319 kb on - strand, within MPMX19_06048at 210.319 kb on - strand, within MPMX19_06048at 210.319 kb on - strand, within MPMX19_06048at 210.319 kb on - strand, within MPMX19_06048at 210.319 kb on - strand, within MPMX19_06048at 210.319 kb on - strand, within MPMX19_06048at 210.319 kb on - strand, within MPMX19_06048at 210.319 kb on - strand, within MPMX19_06048at 210.319 kb on - strand, within MPMX19_06048at 210.319 kb on - strand, within MPMX19_06048at 210.319 kb on - strand, within MPMX19_06048at 210.336 kb on + strand, within MPMX19_06048at 210.337 kb on - strand, within MPMX19_06048at 210.337 kb on - strand, within MPMX19_06048at 210.910 kb on + strand, within MPMX19_06048at 210.910 kb on + strand, within MPMX19_06048at 211.088 kb on + strand, within MPMX19_06048at 211.089 kb on - strand, within MPMX19_06048at 211.089 kb on - strand, within MPMX19_06048at 211.089 kb on - strand, within MPMX19_06048at 212.135 kb on + strandat 212.136 kb on - strandat 212.174 kb on - strandat 212.328 kb on + strandat 212.328 kb on + strandat 212.328 kb on + strandat 212.328 kb on + strandat 212.328 kb on + strandat 212.328 kb on + strandat 212.328 kb on + strandat 212.329 kb on - strandat 212.329 kb on - strandat 212.329 kb on - strandat 212.329 kb on - strandat 212.562 kb on + strandat 212.563 kb on - strandat 212.563 kb on - strandat 212.563 kb on - strandat 212.563 kb on - strandat 212.724 kb on + strand, within MPMX19_06050at 212.724 kb on + strand, within MPMX19_06050at 212.725 kb on - strand, within MPMX19_06050at 212.725 kb on - strand, within MPMX19_06050

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
remove
208,205 - MPMX19_06047 0.43 -2.3
208,205 - MPMX19_06047 0.43 -0.3
208,205 - MPMX19_06047 0.43 +1.6
208,213 + MPMX19_06047 0.44 +1.3
208,213 + MPMX19_06047 0.44 -0.1
208,213 + MPMX19_06047 0.44 +0.5
208,213 + MPMX19_06047 0.44 -1.4
208,213 + MPMX19_06047 0.44 +1.6
208,213 + MPMX19_06047 0.44 -0.5
208,213 + MPMX19_06047 0.44 -0.1
208,213 + MPMX19_06047 0.44 -1.1
208,214 - MPMX19_06047 0.44 -0.9
208,214 - MPMX19_06047 0.44 -0.7
208,214 - MPMX19_06047 0.44 -0.5
208,214 - MPMX19_06047 0.44 +0.3
208,342 + MPMX19_06047 0.55 -0.2
208,342 + MPMX19_06047 0.55 +0.3
208,343 - MPMX19_06047 0.55 -1.9
208,343 - MPMX19_06047 0.55 +0.6
208,905 + -1.0
208,906 - -0.3
208,906 - -0.6
208,906 - -0.5
208,906 - -0.6
208,964 - +1.2
209,012 + +1.6
209,012 + +1.2
209,012 + +0.5
209,013 - +0.1
209,013 - -0.7
209,048 + +1.2
209,048 + +0.9
209,048 + -0.9
209,048 + +0.7
209,048 + -0.8
209,049 - -1.3
209,049 - -2.6
209,049 - +0.4
209,049 - +0.2
209,049 - -0.7
209,049 - -1.5
209,074 - +0.6
209,204 + +0.7
209,204 + -0.1
209,204 + -0.9
209,204 + -1.2
209,204 + +0.1
209,204 + -0.9
209,204 + +0.7
209,204 + -1.3
209,204 + +0.7
209,205 - +0.7
209,205 - +0.9
209,205 - -0.2
209,205 - -0.3
209,205 - -1.8
209,205 - -1.1
209,205 - -0.7
209,205 - -0.1
209,205 - -0.5
209,205 - -0.6
209,205 - +0.9
209,512 - MPMX19_06048 0.12 +0.3
209,512 - MPMX19_06048 0.12 +0.9
209,512 - MPMX19_06048 0.12 +0.1
209,512 - MPMX19_06048 0.12 -1.2
209,512 - MPMX19_06048 0.12 -0.5
209,512 - MPMX19_06048 0.12 -0.8
209,718 + MPMX19_06048 0.19 -0.4
209,718 + MPMX19_06048 0.19 -0.4
209,718 + MPMX19_06048 0.19 -1.3
209,718 + MPMX19_06048 0.19 +0.9
209,719 - MPMX19_06048 0.19 +0.7
209,719 - MPMX19_06048 0.19 +0.1
209,719 - MPMX19_06048 0.19 +0.5
209,719 - MPMX19_06048 0.19 -1.3
209,719 - MPMX19_06048 0.19 -0.1
209,859 + MPMX19_06048 0.25 -0.4
209,859 + MPMX19_06048 0.25 -1.3
209,859 + MPMX19_06048 0.25 -0.6
209,859 + MPMX19_06048 0.25 -0.7
209,859 + MPMX19_06048 0.25 +0.3
209,859 + MPMX19_06048 0.25 +0.6
209,859 + MPMX19_06048 0.25 +0.6
209,859 + MPMX19_06048 0.25 +0.7
209,859 + MPMX19_06048 0.25 -0.6
209,859 + MPMX19_06048 0.25 +1.9
209,859 + MPMX19_06048 0.25 +0.4
209,859 + MPMX19_06048 0.25 -1.3
209,859 + MPMX19_06048 0.25 -1.5
209,859 + MPMX19_06048 0.25 -1.1
209,860 - MPMX19_06048 0.25 -1.3
209,860 - MPMX19_06048 0.25 -3.0
209,860 - MPMX19_06048 0.25 -1.3
209,860 - MPMX19_06048 0.25 +0.7
209,860 - MPMX19_06048 0.25 -0.6
209,860 - MPMX19_06048 0.25 +0.1
209,860 - MPMX19_06048 0.25 +1.4
209,860 - MPMX19_06048 0.25 -0.9
209,860 - MPMX19_06048 0.25 -0.7
209,955 + MPMX19_06048 0.28 -0.0
209,955 + MPMX19_06048 0.28 -0.2
209,955 + MPMX19_06048 0.28 -0.2
209,955 + MPMX19_06048 0.28 -0.0
209,955 + MPMX19_06048 0.28 -0.1
209,955 + MPMX19_06048 0.28 -1.6
209,955 + MPMX19_06048 0.28 -1.7
209,956 - MPMX19_06048 0.28 -0.2
209,956 - MPMX19_06048 0.28 +0.1
209,956 - MPMX19_06048 0.28 +0.4
209,956 - MPMX19_06048 0.28 +1.5
209,956 - MPMX19_06048 0.28 +0.9
209,956 - MPMX19_06048 0.28 +1.3
209,956 - MPMX19_06048 0.28 +0.2
209,956 - MPMX19_06048 0.28 +0.9
209,956 - MPMX19_06048 0.28 -0.1
209,956 - MPMX19_06048 0.28 -0.1
209,956 - MPMX19_06048 0.28 +0.2
210,318 + MPMX19_06048 0.42 -0.5
210,318 + MPMX19_06048 0.42 +0.7
210,318 + MPMX19_06048 0.42 -0.6
210,318 + MPMX19_06048 0.42 +0.8
210,318 + MPMX19_06048 0.42 +0.1
210,318 + MPMX19_06048 0.42 +0.2
210,318 + MPMX19_06048 0.42 +0.2
210,318 + MPMX19_06048 0.42 -0.9
210,318 + MPMX19_06048 0.42 -0.1
210,318 + MPMX19_06048 0.42 -0.5
210,318 + MPMX19_06048 0.42 +1.1
210,318 + MPMX19_06048 0.42 +0.4
210,318 + MPMX19_06048 0.42 +0.4
210,318 + MPMX19_06048 0.42 -0.8
210,318 + MPMX19_06048 0.42 +0.3
210,318 + MPMX19_06048 0.42 -0.4
210,318 + MPMX19_06048 0.42 -0.7
210,319 - MPMX19_06048 0.42 +0.2
210,319 - MPMX19_06048 0.42 -1.0
210,319 - MPMX19_06048 0.42 -0.2
210,319 - MPMX19_06048 0.42 +0.3
210,319 - MPMX19_06048 0.42 -0.5
210,319 - MPMX19_06048 0.42 -0.7
210,319 - MPMX19_06048 0.42 -0.9
210,319 - MPMX19_06048 0.42 +0.4
210,319 - MPMX19_06048 0.42 +0.3
210,319 - MPMX19_06048 0.42 +0.3
210,319 - MPMX19_06048 0.42 +1.4
210,336 + MPMX19_06048 0.43 +0.3
210,337 - MPMX19_06048 0.43 +0.7
210,337 - MPMX19_06048 0.43 -0.0
210,910 + MPMX19_06048 0.65 +0.0
210,910 + MPMX19_06048 0.65 -1.6
211,088 + MPMX19_06048 0.71 +0.4
211,089 - MPMX19_06048 0.71 -1.6
211,089 - MPMX19_06048 0.71 -0.5
211,089 - MPMX19_06048 0.71 +0.6
212,135 + -0.8
212,136 - +2.2
212,174 - -0.1
212,328 + -0.5
212,328 + -1.2
212,328 + -0.7
212,328 + -1.0
212,328 + +0.0
212,328 + +0.3
212,328 + -0.6
212,329 - -1.7
212,329 - -0.5
212,329 - -0.5
212,329 - -1.5
212,562 + -0.6
212,563 - -1.0
212,563 - -1.5
212,563 - -2.0
212,563 - -1.9
212,724 + MPMX19_06050 0.11 +0.5
212,724 + MPMX19_06050 0.11 -0.5
212,725 - MPMX19_06050 0.11 -0.5
212,725 - MPMX19_06050 0.11 -0.7

Or see this region's nucleotide sequence