Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05720 and MPMX19_05721 are separated by 75 nucleotides MPMX19_05721 and MPMX19_05722 are separated by 16 nucleotides MPMX19_05722 and MPMX19_05723 are separated by 46 nucleotides
MPMX19_05720: MPMX19_05720 - hypothetical protein, at 438,737 to 439,891
_05720
MPMX19_05721: MPMX19_05721 - Hydrogenase maturation factor HypB, at 439,967 to 441,019
_05721
MPMX19_05722: MPMX19_05722 - hypothetical protein, at 441,036 to 441,266
_05722
MPMX19_05723: MPMX19_05723 - Carbamoyl dehydratase HypE, at 441,313 to 442,359
_05723
Position (kb) 439
440
441
442 Strain fitness (log2 ratio) -2
-1
0
1
2 at 439.113 kb on - strand, within MPMX19_05720 at 439.113 kb on - strand, within MPMX19_05720 at 439.875 kb on + strand at 439.875 kb on + strand at 439.875 kb on + strand at 439.875 kb on + strand at 439.875 kb on + strand at 439.875 kb on + strand at 439.875 kb on + strand at 439.875 kb on + strand at 439.876 kb on - strand at 439.876 kb on - strand at 439.876 kb on - strand at 439.876 kb on - strand at 439.876 kb on - strand at 439.876 kb on - strand at 439.876 kb on - strand at 439.876 kb on - strand at 439.876 kb on - strand at 439.881 kb on + strand at 439.881 kb on + strand at 439.881 kb on + strand at 439.881 kb on + strand at 439.881 kb on + strand at 439.881 kb on + strand at 439.881 kb on + strand at 439.881 kb on + strand at 439.881 kb on + strand at 439.881 kb on + strand at 439.882 kb on - strand at 439.882 kb on - strand at 439.882 kb on - strand at 439.882 kb on - strand at 439.882 kb on - strand at 439.882 kb on - strand at 439.882 kb on - strand at 439.882 kb on - strand at 439.882 kb on - strand at 439.882 kb on - strand at 439.882 kb on - strand at 439.882 kb on - strand at 439.882 kb on - strand at 439.882 kb on - strand at 439.882 kb on - strand at 439.882 kb on - strand at 439.882 kb on - strand at 439.882 kb on - strand at 440.215 kb on + strand, within MPMX19_05721 at 440.215 kb on + strand, within MPMX19_05721 at 440.215 kb on + strand, within MPMX19_05721 at 440.215 kb on + strand, within MPMX19_05721 at 440.215 kb on + strand, within MPMX19_05721 at 440.215 kb on + strand, within MPMX19_05721 at 440.215 kb on + strand, within MPMX19_05721 at 440.215 kb on + strand, within MPMX19_05721 at 440.215 kb on + strand, within MPMX19_05721 at 440.215 kb on + strand, within MPMX19_05721 at 440.215 kb on + strand, within MPMX19_05721 at 440.215 kb on + strand, within MPMX19_05721 at 440.215 kb on + strand, within MPMX19_05721 at 440.215 kb on + strand, within MPMX19_05721 at 440.215 kb on + strand, within MPMX19_05721 at 440.216 kb on - strand, within MPMX19_05721 at 440.216 kb on - strand, within MPMX19_05721 at 440.216 kb on - strand, within MPMX19_05721 at 440.216 kb on - strand, within MPMX19_05721 at 440.216 kb on - strand, within MPMX19_05721 at 440.216 kb on - strand, within MPMX19_05721 at 440.216 kb on - strand, within MPMX19_05721 at 440.216 kb on - strand, within MPMX19_05721 at 440.216 kb on - strand, within MPMX19_05721 at 440.216 kb on - strand, within MPMX19_05721 at 440.216 kb on - strand, within MPMX19_05721 at 440.216 kb on - strand, within MPMX19_05721 at 440.216 kb on - strand, within MPMX19_05721 at 440.216 kb on - strand, within MPMX19_05721 at 440.216 kb on - strand, within MPMX19_05721 at 440.216 kb on - strand, within MPMX19_05721 at 440.786 kb on + strand, within MPMX19_05721 at 440.880 kb on - strand, within MPMX19_05721 at 440.954 kb on + strand at 440.954 kb on + strand at 440.954 kb on + strand at 440.954 kb on + strand at 440.954 kb on + strand at 440.955 kb on - strand at 440.955 kb on - strand at 440.955 kb on - strand at 440.955 kb on - strand at 440.955 kb on - strand at 440.955 kb on - strand at 440.955 kb on - strand at 440.998 kb on + strand at 440.998 kb on + strand at 440.998 kb on + strand at 440.998 kb on + strand at 440.998 kb on + strand at 440.998 kb on + strand at 440.998 kb on + strand at 440.998 kb on + strand at 440.998 kb on + strand at 440.999 kb on - strand at 440.999 kb on - strand at 440.999 kb on - strand at 440.999 kb on - strand at 440.999 kb on - strand at 440.999 kb on - strand at 440.999 kb on - strand at 440.999 kb on - strand at 440.999 kb on - strand at 440.999 kb on - strand at 441.159 kb on + strand, within MPMX19_05722 at 441.159 kb on + strand, within MPMX19_05722 at 441.159 kb on + strand, within MPMX19_05722 at 441.159 kb on + strand, within MPMX19_05722 at 441.159 kb on + strand, within MPMX19_05722 at 441.159 kb on + strand, within MPMX19_05722 at 441.159 kb on + strand, within MPMX19_05722 at 441.160 kb on - strand, within MPMX19_05722 at 441.160 kb on - strand, within MPMX19_05722 at 441.160 kb on - strand, within MPMX19_05722 at 441.160 kb on - strand, within MPMX19_05722 at 441.160 kb on - strand, within MPMX19_05722 at 441.160 kb on - strand, within MPMX19_05722 at 441.160 kb on - strand, within MPMX19_05722 at 441.181 kb on - strand, within MPMX19_05722 at 441.181 kb on - strand, within MPMX19_05722 at 441.765 kb on + strand, within MPMX19_05723 at 441.765 kb on + strand, within MPMX19_05723 at 441.765 kb on + strand, within MPMX19_05723 at 441.766 kb on - strand, within MPMX19_05723 at 441.766 kb on - strand, within MPMX19_05723 at 441.766 kb on - strand, within MPMX19_05723 at 441.766 kb on - strand, within MPMX19_05723 at 441.766 kb on - strand, within MPMX19_05723 at 441.797 kb on + strand, within MPMX19_05723 at 441.798 kb on - strand, within MPMX19_05723
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 439,113 - MPMX19_05720 0.33 +1.8 439,113 - MPMX19_05720 0.33 -0.8 439,875 + +0.8 439,875 + +0.8 439,875 + -0.4 439,875 + -0.4 439,875 + -0.8 439,875 + -0.4 439,875 + -2.5 439,875 + -2.0 439,876 - -0.2 439,876 - -1.5 439,876 - +0.4 439,876 - -1.0 439,876 - -0.7 439,876 - -1.2 439,876 - -0.2 439,876 - -1.1 439,876 - -1.4 439,881 + +0.0 439,881 + +1.1 439,881 + +0.7 439,881 + -0.6 439,881 + +0.8 439,881 + -1.0 439,881 + -0.2 439,881 + -1.5 439,881 + -0.5 439,881 + +0.5 439,882 - -0.2 439,882 - +0.1 439,882 - +0.4 439,882 - -0.2 439,882 - +0.0 439,882 - -0.8 439,882 - +0.2 439,882 - -0.1 439,882 - -0.7 439,882 - +0.0 439,882 - +1.7 439,882 - -0.4 439,882 - -0.4 439,882 - +0.8 439,882 - -1.9 439,882 - -0.3 439,882 - -1.5 439,882 - +0.4 440,215 + MPMX19_05721 0.24 +0.1 440,215 + MPMX19_05721 0.24 +0.0 440,215 + MPMX19_05721 0.24 -0.4 440,215 + MPMX19_05721 0.24 +0.4 440,215 + MPMX19_05721 0.24 -2.6 440,215 + MPMX19_05721 0.24 -1.4 440,215 + MPMX19_05721 0.24 -0.4 440,215 + MPMX19_05721 0.24 +0.2 440,215 + MPMX19_05721 0.24 +0.8 440,215 + MPMX19_05721 0.24 +1.2 440,215 + MPMX19_05721 0.24 +0.3 440,215 + MPMX19_05721 0.24 -0.7 440,215 + MPMX19_05721 0.24 -0.7 440,215 + MPMX19_05721 0.24 +0.0 440,215 + MPMX19_05721 0.24 -2.0 440,216 - MPMX19_05721 0.24 +0.2 440,216 - MPMX19_05721 0.24 +0.9 440,216 - MPMX19_05721 0.24 +1.0 440,216 - MPMX19_05721 0.24 -0.7 440,216 - MPMX19_05721 0.24 -0.2 440,216 - MPMX19_05721 0.24 +0.3 440,216 - MPMX19_05721 0.24 -0.9 440,216 - MPMX19_05721 0.24 -0.7 440,216 - MPMX19_05721 0.24 -0.3 440,216 - MPMX19_05721 0.24 -1.5 440,216 - MPMX19_05721 0.24 -0.5 440,216 - MPMX19_05721 0.24 +0.8 440,216 - MPMX19_05721 0.24 -0.1 440,216 - MPMX19_05721 0.24 +0.5 440,216 - MPMX19_05721 0.24 +0.2 440,216 - MPMX19_05721 0.24 +0.1 440,786 + MPMX19_05721 0.78 +0.5 440,880 - MPMX19_05721 0.87 -0.2 440,954 + -1.4 440,954 + -0.3 440,954 + +0.0 440,954 + +0.4 440,954 + +0.4 440,955 - +1.2 440,955 - -1.8 440,955 - -0.5 440,955 - -0.5 440,955 - +0.8 440,955 - +0.7 440,955 - -1.2 440,998 + +0.6 440,998 + -1.0 440,998 + -0.2 440,998 + -0.7 440,998 + -0.4 440,998 + -0.3 440,998 + +1.3 440,998 + -0.5 440,998 + +0.4 440,999 - +0.1 440,999 - +1.8 440,999 - -1.8 440,999 - +0.2 440,999 - +0.8 440,999 - +0.1 440,999 - +2.0 440,999 - +0.7 440,999 - -0.8 440,999 - -0.2 441,159 + MPMX19_05722 0.53 +0.7 441,159 + MPMX19_05722 0.53 -0.3 441,159 + MPMX19_05722 0.53 -0.3 441,159 + MPMX19_05722 0.53 -1.9 441,159 + MPMX19_05722 0.53 +0.2 441,159 + MPMX19_05722 0.53 -0.8 441,159 + MPMX19_05722 0.53 -0.2 441,160 - MPMX19_05722 0.54 -0.7 441,160 - MPMX19_05722 0.54 +0.7 441,160 - MPMX19_05722 0.54 +0.5 441,160 - MPMX19_05722 0.54 -0.4 441,160 - MPMX19_05722 0.54 -0.8 441,160 - MPMX19_05722 0.54 -1.2 441,160 - MPMX19_05722 0.54 -1.7 441,181 - MPMX19_05722 0.63 +0.9 441,181 - MPMX19_05722 0.63 -0.3 441,765 + MPMX19_05723 0.43 -0.8 441,765 + MPMX19_05723 0.43 -0.8 441,765 + MPMX19_05723 0.43 -0.2 441,766 - MPMX19_05723 0.43 -0.7 441,766 - MPMX19_05723 0.43 -0.7 441,766 - MPMX19_05723 0.43 -0.6 441,766 - MPMX19_05723 0.43 +0.9 441,766 - MPMX19_05723 0.43 +0.1 441,797 + MPMX19_05723 0.46 -0.7 441,798 - MPMX19_05723 0.46 -0.2
Or see this region's nucleotide sequence