Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05584

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05583 and MPMX19_05584 are separated by 309 nucleotidesMPMX19_05584 and MPMX19_05585 are separated by 293 nucleotidesMPMX19_05585 and MPMX19_05586 are separated by 21 nucleotides MPMX19_05583: MPMX19_05583 - HTH-type transcriptional regulator TsaQ1/TsaQ2, at 293,349 to 294,161 _05583 MPMX19_05584: MPMX19_05584 - hypothetical protein, at 294,471 to 296,171 _05584 MPMX19_05585: MPMX19_05585 - hypothetical protein, at 296,465 to 297,127 _05585 MPMX19_05586: MPMX19_05586 - hypothetical protein, at 297,149 to 297,802 _05586 Position (kb) 294 295 296 297Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 293.538 kb on + strand, within MPMX19_05583at 293.538 kb on + strand, within MPMX19_05583at 293.538 kb on + strand, within MPMX19_05583at 293.538 kb on + strand, within MPMX19_05583at 293.538 kb on + strand, within MPMX19_05583at 293.538 kb on + strand, within MPMX19_05583at 293.538 kb on + strand, within MPMX19_05583at 293.538 kb on + strand, within MPMX19_05583at 293.538 kb on + strand, within MPMX19_05583at 293.539 kb on - strand, within MPMX19_05583at 293.539 kb on - strand, within MPMX19_05583at 293.539 kb on - strand, within MPMX19_05583at 293.539 kb on - strand, within MPMX19_05583at 293.539 kb on - strand, within MPMX19_05583at 293.539 kb on - strand, within MPMX19_05583at 293.539 kb on - strand, within MPMX19_05583at 293.539 kb on - strand, within MPMX19_05583at 293.559 kb on + strand, within MPMX19_05583at 293.559 kb on + strand, within MPMX19_05583at 293.559 kb on + strand, within MPMX19_05583at 293.559 kb on + strand, within MPMX19_05583at 293.560 kb on - strand, within MPMX19_05583at 293.560 kb on - strand, within MPMX19_05583at 293.560 kb on - strand, within MPMX19_05583at 293.560 kb on - strand, within MPMX19_05583at 293.560 kb on - strand, within MPMX19_05583at 293.560 kb on - strand, within MPMX19_05583at 293.561 kb on - strand, within MPMX19_05583at 293.568 kb on + strand, within MPMX19_05583at 293.568 kb on + strand, within MPMX19_05583at 293.568 kb on + strand, within MPMX19_05583at 293.568 kb on + strand, within MPMX19_05583at 293.568 kb on + strand, within MPMX19_05583at 293.569 kb on - strand, within MPMX19_05583at 293.569 kb on - strand, within MPMX19_05583at 293.589 kb on + strand, within MPMX19_05583at 293.589 kb on + strand, within MPMX19_05583at 293.589 kb on + strand, within MPMX19_05583at 293.589 kb on + strand, within MPMX19_05583at 293.589 kb on + strand, within MPMX19_05583at 293.590 kb on - strand, within MPMX19_05583at 293.622 kb on + strand, within MPMX19_05583at 293.622 kb on + strand, within MPMX19_05583at 293.622 kb on + strand, within MPMX19_05583at 293.622 kb on + strand, within MPMX19_05583at 293.623 kb on - strand, within MPMX19_05583at 293.623 kb on - strand, within MPMX19_05583at 293.739 kb on + strand, within MPMX19_05583at 293.739 kb on + strand, within MPMX19_05583at 293.739 kb on + strand, within MPMX19_05583at 293.739 kb on + strand, within MPMX19_05583at 293.739 kb on + strand, within MPMX19_05583at 293.739 kb on + strand, within MPMX19_05583at 293.739 kb on + strand, within MPMX19_05583at 293.739 kb on + strand, within MPMX19_05583at 293.739 kb on + strand, within MPMX19_05583at 293.739 kb on + strand, within MPMX19_05583at 293.739 kb on + strand, within MPMX19_05583at 293.740 kb on - strand, within MPMX19_05583at 293.740 kb on - strand, within MPMX19_05583at 293.740 kb on - strand, within MPMX19_05583at 293.740 kb on - strand, within MPMX19_05583at 293.740 kb on - strand, within MPMX19_05583at 293.740 kb on - strand, within MPMX19_05583at 293.740 kb on - strand, within MPMX19_05583at 293.832 kb on + strand, within MPMX19_05583at 293.832 kb on + strand, within MPMX19_05583at 293.832 kb on + strand, within MPMX19_05583at 293.961 kb on + strand, within MPMX19_05583at 293.961 kb on + strand, within MPMX19_05583at 293.961 kb on + strand, within MPMX19_05583at 293.961 kb on + strand, within MPMX19_05583at 293.962 kb on - strand, within MPMX19_05583at 293.962 kb on - strand, within MPMX19_05583at 293.962 kb on - strand, within MPMX19_05583at 293.962 kb on - strand, within MPMX19_05583at 294.236 kb on + strandat 294.270 kb on + strandat 294.270 kb on + strandat 294.271 kb on - strandat 294.272 kb on + strandat 294.272 kb on + strandat 294.272 kb on + strandat 294.272 kb on + strandat 294.272 kb on + strandat 294.273 kb on - strandat 295.807 kb on + strand, within MPMX19_05584at 295.807 kb on + strand, within MPMX19_05584at 295.807 kb on + strand, within MPMX19_05584at 295.807 kb on + strand, within MPMX19_05584at 295.807 kb on + strand, within MPMX19_05584at 295.808 kb on - strand, within MPMX19_05584at 295.808 kb on - strand, within MPMX19_05584at 295.808 kb on - strand, within MPMX19_05584at 295.808 kb on - strand, within MPMX19_05584at 295.808 kb on - strand, within MPMX19_05584at 295.810 kb on + strand, within MPMX19_05584at 295.810 kb on + strand, within MPMX19_05584at 295.811 kb on - strand, within MPMX19_05584at 295.811 kb on - strand, within MPMX19_05584at 295.929 kb on + strand, within MPMX19_05584at 295.966 kb on + strand, within MPMX19_05584at 295.966 kb on + strand, within MPMX19_05584at 295.966 kb on + strand, within MPMX19_05584at 295.966 kb on + strand, within MPMX19_05584at 295.967 kb on - strand, within MPMX19_05584at 295.967 kb on - strand, within MPMX19_05584at 295.967 kb on - strand, within MPMX19_05584at 295.967 kb on - strand, within MPMX19_05584at 295.967 kb on - strand, within MPMX19_05584at 295.967 kb on - strand, within MPMX19_05584at 296.145 kb on - strandat 296.145 kb on - strandat 296.148 kb on + strandat 296.148 kb on + strandat 296.148 kb on + strandat 296.148 kb on + strandat 296.148 kb on + strandat 296.149 kb on - strandat 296.180 kb on - strandat 296.310 kb on - strandat 296.331 kb on + strandat 296.331 kb on + strandat 296.332 kb on - strandat 296.332 kb on - strandat 296.332 kb on - strandat 296.357 kb on + strandat 296.516 kb on + strandat 296.516 kb on + strandat 296.516 kb on + strandat 296.516 kb on + strandat 296.516 kb on + strandat 296.516 kb on + strandat 296.516 kb on + strandat 296.516 kb on + strandat 296.517 kb on - strandat 296.517 kb on - strandat 296.517 kb on - strandat 296.517 kb on - strandat 296.517 kb on - strandat 296.517 kb on - strandat 296.517 kb on - strandat 296.735 kb on + strand, within MPMX19_05585at 296.736 kb on - strand, within MPMX19_05585at 296.736 kb on - strand, within MPMX19_05585at 296.736 kb on - strand, within MPMX19_05585at 296.736 kb on - strand, within MPMX19_05585at 296.736 kb on - strand, within MPMX19_05585at 296.736 kb on - strand, within MPMX19_05585at 296.894 kb on + strand, within MPMX19_05585at 296.894 kb on + strand, within MPMX19_05585at 296.894 kb on + strand, within MPMX19_05585at 296.894 kb on + strand, within MPMX19_05585at 296.894 kb on + strand, within MPMX19_05585at 296.894 kb on + strand, within MPMX19_05585at 296.894 kb on + strand, within MPMX19_05585at 296.894 kb on + strand, within MPMX19_05585at 296.894 kb on + strand, within MPMX19_05585at 296.895 kb on - strand, within MPMX19_05585at 296.895 kb on - strand, within MPMX19_05585at 296.895 kb on - strand, within MPMX19_05585at 296.895 kb on - strand, within MPMX19_05585at 296.895 kb on - strand, within MPMX19_05585at 296.954 kb on + strand, within MPMX19_05585at 296.954 kb on + strand, within MPMX19_05585at 296.954 kb on + strand, within MPMX19_05585at 296.954 kb on + strand, within MPMX19_05585at 296.954 kb on + strand, within MPMX19_05585at 296.955 kb on - strand, within MPMX19_05585at 296.955 kb on - strand, within MPMX19_05585at 296.955 kb on - strand, within MPMX19_05585at 296.955 kb on - strand, within MPMX19_05585at 296.955 kb on - strand, within MPMX19_05585at 296.955 kb on - strand, within MPMX19_05585at 296.955 kb on - strand, within MPMX19_05585at 296.955 kb on - strand, within MPMX19_05585at 296.955 kb on - strand, within MPMX19_05585at 296.955 kb on - strand, within MPMX19_05585at 296.955 kb on - strand, within MPMX19_05585at 296.955 kb on - strand, within MPMX19_05585at 296.996 kb on + strand, within MPMX19_05585at 296.996 kb on + strand, within MPMX19_05585at 296.996 kb on + strand, within MPMX19_05585at 296.997 kb on - strand, within MPMX19_05585at 296.997 kb on - strand, within MPMX19_05585at 297.035 kb on + strand, within MPMX19_05585at 297.035 kb on + strand, within MPMX19_05585at 297.035 kb on + strand, within MPMX19_05585at 297.035 kb on + strand, within MPMX19_05585at 297.035 kb on + strand, within MPMX19_05585at 297.035 kb on + strand, within MPMX19_05585at 297.035 kb on + strand, within MPMX19_05585at 297.035 kb on + strand, within MPMX19_05585at 297.035 kb on + strand, within MPMX19_05585at 297.035 kb on + strand, within MPMX19_05585at 297.035 kb on + strand, within MPMX19_05585at 297.036 kb on - strand, within MPMX19_05585at 297.036 kb on - strand, within MPMX19_05585at 297.036 kb on - strand, within MPMX19_05585at 297.036 kb on - strand, within MPMX19_05585at 297.036 kb on - strand, within MPMX19_05585at 297.036 kb on - strand, within MPMX19_05585at 297.036 kb on - strand, within MPMX19_05585at 297.036 kb on - strand, within MPMX19_05585at 297.036 kb on - strand, within MPMX19_05585

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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293,538 + MPMX19_05583 0.23 -1.2
293,538 + MPMX19_05583 0.23 -1.1
293,538 + MPMX19_05583 0.23 +0.3
293,538 + MPMX19_05583 0.23 +0.4
293,538 + MPMX19_05583 0.23 -0.7
293,538 + MPMX19_05583 0.23 +0.3
293,538 + MPMX19_05583 0.23 -0.2
293,538 + MPMX19_05583 0.23 -0.8
293,538 + MPMX19_05583 0.23 -0.3
293,539 - MPMX19_05583 0.23 +1.2
293,539 - MPMX19_05583 0.23 -0.5
293,539 - MPMX19_05583 0.23 -1.8
293,539 - MPMX19_05583 0.23 +0.7
293,539 - MPMX19_05583 0.23 -0.6
293,539 - MPMX19_05583 0.23 -2.6
293,539 - MPMX19_05583 0.23 +0.5
293,539 - MPMX19_05583 0.23 -0.9
293,559 + MPMX19_05583 0.26 +0.4
293,559 + MPMX19_05583 0.26 -0.2
293,559 + MPMX19_05583 0.26 +0.0
293,559 + MPMX19_05583 0.26 -1.3
293,560 - MPMX19_05583 0.26 +0.1
293,560 - MPMX19_05583 0.26 -0.3
293,560 - MPMX19_05583 0.26 -0.2
293,560 - MPMX19_05583 0.26 -1.2
293,560 - MPMX19_05583 0.26 -1.4
293,560 - MPMX19_05583 0.26 -0.2
293,561 - MPMX19_05583 0.26 -1.0
293,568 + MPMX19_05583 0.27 -0.9
293,568 + MPMX19_05583 0.27 +0.2
293,568 + MPMX19_05583 0.27 -0.1
293,568 + MPMX19_05583 0.27 -1.8
293,568 + MPMX19_05583 0.27 +0.4
293,569 - MPMX19_05583 0.27 -0.0
293,569 - MPMX19_05583 0.27 -1.0
293,589 + MPMX19_05583 0.30 +0.7
293,589 + MPMX19_05583 0.30 -1.2
293,589 + MPMX19_05583 0.30 -1.2
293,589 + MPMX19_05583 0.30 -0.5
293,589 + MPMX19_05583 0.30 +0.2
293,590 - MPMX19_05583 0.30 -1.0
293,622 + MPMX19_05583 0.34 +0.4
293,622 + MPMX19_05583 0.34 -0.9
293,622 + MPMX19_05583 0.34 -0.2
293,622 + MPMX19_05583 0.34 +0.6
293,623 - MPMX19_05583 0.34 +0.1
293,623 - MPMX19_05583 0.34 +0.4
293,739 + MPMX19_05583 0.48 +0.4
293,739 + MPMX19_05583 0.48 -1.0
293,739 + MPMX19_05583 0.48 -1.2
293,739 + MPMX19_05583 0.48 -0.3
293,739 + MPMX19_05583 0.48 +2.4
293,739 + MPMX19_05583 0.48 +0.7
293,739 + MPMX19_05583 0.48 -0.5
293,739 + MPMX19_05583 0.48 -1.6
293,739 + MPMX19_05583 0.48 -1.1
293,739 + MPMX19_05583 0.48 -1.2
293,739 + MPMX19_05583 0.48 +0.7
293,740 - MPMX19_05583 0.48 +1.8
293,740 - MPMX19_05583 0.48 +0.7
293,740 - MPMX19_05583 0.48 +0.8
293,740 - MPMX19_05583 0.48 -1.0
293,740 - MPMX19_05583 0.48 -0.6
293,740 - MPMX19_05583 0.48 -1.3
293,740 - MPMX19_05583 0.48 -1.3
293,832 + MPMX19_05583 0.59 -1.3
293,832 + MPMX19_05583 0.59 -0.3
293,832 + MPMX19_05583 0.59 -0.8
293,961 + MPMX19_05583 0.75 +1.0
293,961 + MPMX19_05583 0.75 -0.6
293,961 + MPMX19_05583 0.75 +0.8
293,961 + MPMX19_05583 0.75 +0.0
293,962 - MPMX19_05583 0.75 -0.9
293,962 - MPMX19_05583 0.75 -1.0
293,962 - MPMX19_05583 0.75 +0.0
293,962 - MPMX19_05583 0.75 -1.9
294,236 + +1.2
294,270 + -1.5
294,270 + -0.1
294,271 - -1.5
294,272 + -0.8
294,272 + -0.3
294,272 + -0.2
294,272 + -0.8
294,272 + +0.1
294,273 - +0.7
295,807 + MPMX19_05584 0.79 -1.5
295,807 + MPMX19_05584 0.79 -1.0
295,807 + MPMX19_05584 0.79 -0.3
295,807 + MPMX19_05584 0.79 -0.6
295,807 + MPMX19_05584 0.79 +0.5
295,808 - MPMX19_05584 0.79 -1.3
295,808 - MPMX19_05584 0.79 -0.0
295,808 - MPMX19_05584 0.79 -1.3
295,808 - MPMX19_05584 0.79 +1.2
295,808 - MPMX19_05584 0.79 -2.8
295,810 + MPMX19_05584 0.79 +0.6
295,810 + MPMX19_05584 0.79 +1.8
295,811 - MPMX19_05584 0.79 -2.3
295,811 - MPMX19_05584 0.79 -0.3
295,929 + MPMX19_05584 0.86 -1.3
295,966 + MPMX19_05584 0.88 -0.8
295,966 + MPMX19_05584 0.88 -0.2
295,966 + MPMX19_05584 0.88 -1.2
295,966 + MPMX19_05584 0.88 +0.5
295,967 - MPMX19_05584 0.88 -0.8
295,967 - MPMX19_05584 0.88 +0.1
295,967 - MPMX19_05584 0.88 +2.4
295,967 - MPMX19_05584 0.88 -1.3
295,967 - MPMX19_05584 0.88 -1.0
295,967 - MPMX19_05584 0.88 -1.8
296,145 - +1.5
296,145 - -0.3
296,148 + -1.6
296,148 + -1.0
296,148 + +0.8
296,148 + +0.8
296,148 + -0.6
296,149 - -1.2
296,180 - +0.2
296,310 - +0.5
296,331 + -1.8
296,331 + -0.0
296,332 - -0.3
296,332 - -1.6
296,332 - +1.2
296,357 + +0.9
296,516 + -2.3
296,516 + -0.8
296,516 + -0.4
296,516 + -0.8
296,516 + -0.9
296,516 + -0.6
296,516 + -0.3
296,516 + -0.2
296,517 - +0.4
296,517 - +0.8
296,517 - -0.5
296,517 - -1.5
296,517 - -1.3
296,517 - -0.6
296,517 - -1.9
296,735 + MPMX19_05585 0.41 +0.7
296,736 - MPMX19_05585 0.41 -0.2
296,736 - MPMX19_05585 0.41 -1.5
296,736 - MPMX19_05585 0.41 -1.5
296,736 - MPMX19_05585 0.41 +0.1
296,736 - MPMX19_05585 0.41 +0.5
296,736 - MPMX19_05585 0.41 -0.3
296,894 + MPMX19_05585 0.65 -0.4
296,894 + MPMX19_05585 0.65 +0.6
296,894 + MPMX19_05585 0.65 +0.5
296,894 + MPMX19_05585 0.65 +1.1
296,894 + MPMX19_05585 0.65 -2.6
296,894 + MPMX19_05585 0.65 -1.0
296,894 + MPMX19_05585 0.65 +0.6
296,894 + MPMX19_05585 0.65 -0.3
296,894 + MPMX19_05585 0.65 -0.2
296,895 - MPMX19_05585 0.65 -0.6
296,895 - MPMX19_05585 0.65 +0.7
296,895 - MPMX19_05585 0.65 -0.3
296,895 - MPMX19_05585 0.65 +0.8
296,895 - MPMX19_05585 0.65 +0.5
296,954 + MPMX19_05585 0.74 -0.3
296,954 + MPMX19_05585 0.74 +0.2
296,954 + MPMX19_05585 0.74 -1.2
296,954 + MPMX19_05585 0.74 +0.5
296,954 + MPMX19_05585 0.74 -0.4
296,955 - MPMX19_05585 0.74 -0.7
296,955 - MPMX19_05585 0.74 +0.8
296,955 - MPMX19_05585 0.74 -0.3
296,955 - MPMX19_05585 0.74 +1.3
296,955 - MPMX19_05585 0.74 +0.2
296,955 - MPMX19_05585 0.74 +0.6
296,955 - MPMX19_05585 0.74 -0.8
296,955 - MPMX19_05585 0.74 +0.8
296,955 - MPMX19_05585 0.74 +1.6
296,955 - MPMX19_05585 0.74 -0.8
296,955 - MPMX19_05585 0.74 +1.2
296,955 - MPMX19_05585 0.74 -1.8
296,996 + MPMX19_05585 0.80 -1.3
296,996 + MPMX19_05585 0.80 -1.2
296,996 + MPMX19_05585 0.80 -0.5
296,997 - MPMX19_05585 0.80 -0.2
296,997 - MPMX19_05585 0.80 -1.0
297,035 + MPMX19_05585 0.86 -1.2
297,035 + MPMX19_05585 0.86 -0.2
297,035 + MPMX19_05585 0.86 -1.8
297,035 + MPMX19_05585 0.86 +2.1
297,035 + MPMX19_05585 0.86 +0.1
297,035 + MPMX19_05585 0.86 +0.1
297,035 + MPMX19_05585 0.86 -0.8
297,035 + MPMX19_05585 0.86 +0.8
297,035 + MPMX19_05585 0.86 -0.2
297,035 + MPMX19_05585 0.86 +0.6
297,035 + MPMX19_05585 0.86 -0.6
297,036 - MPMX19_05585 0.86 -0.2
297,036 - MPMX19_05585 0.86 -1.0
297,036 - MPMX19_05585 0.86 +0.7
297,036 - MPMX19_05585 0.86 -0.3
297,036 - MPMX19_05585 0.86 +1.1
297,036 - MPMX19_05585 0.86 +1.4
297,036 - MPMX19_05585 0.86 +0.8
297,036 - MPMX19_05585 0.86 -1.5
297,036 - MPMX19_05585 0.86 +0.4

Or see this region's nucleotide sequence