Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05164

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05163 and MPMX19_05164 are separated by 1 nucleotidesMPMX19_05164 and MPMX19_05165 overlap by 4 nucleotidesMPMX19_05165 and MPMX19_05166 are separated by 52 nucleotides MPMX19_05163: MPMX19_05163 - hypothetical protein, at 663,841 to 664,932 _05163 MPMX19_05164: MPMX19_05164 - putative ABC transporter permease protein, at 664,934 to 665,941 _05164 MPMX19_05165: MPMX19_05165 - putative ABC transporter ATP-binding protein, at 665,938 to 666,732 _05165 MPMX19_05166: MPMX19_05166 - Metal-pseudopaline receptor CntO, at 666,785 to 668,959 _05166 Position (kb) 664 665 666Strain fitness (log2 ratio) -3 -2 -1 0 1at 664.054 kb on + strand, within MPMX19_05163at 664.054 kb on + strand, within MPMX19_05163at 664.054 kb on + strand, within MPMX19_05163at 664.054 kb on + strand, within MPMX19_05163at 664.054 kb on + strand, within MPMX19_05163at 664.054 kb on + strand, within MPMX19_05163at 664.054 kb on + strand, within MPMX19_05163at 664.054 kb on + strand, within MPMX19_05163at 664.055 kb on - strand, within MPMX19_05163at 664.055 kb on - strand, within MPMX19_05163at 664.055 kb on - strand, within MPMX19_05163at 664.055 kb on - strand, within MPMX19_05163at 664.055 kb on - strand, within MPMX19_05163at 664.055 kb on - strand, within MPMX19_05163at 664.055 kb on - strand, within MPMX19_05163at 664.055 kb on - strand, within MPMX19_05163at 664.055 kb on - strand, within MPMX19_05163at 664.055 kb on - strand, within MPMX19_05163at 664.055 kb on - strand, within MPMX19_05163at 664.055 kb on - strand, within MPMX19_05163at 664.055 kb on - strand, within MPMX19_05163at 664.055 kb on - strand, within MPMX19_05163at 664.465 kb on + strand, within MPMX19_05163at 664.465 kb on + strand, within MPMX19_05163at 664.465 kb on + strand, within MPMX19_05163at 664.465 kb on + strand, within MPMX19_05163at 664.465 kb on + strand, within MPMX19_05163at 664.465 kb on + strand, within MPMX19_05163at 664.465 kb on + strand, within MPMX19_05163at 664.465 kb on + strand, within MPMX19_05163at 664.465 kb on + strand, within MPMX19_05163at 664.466 kb on - strand, within MPMX19_05163at 664.466 kb on - strand, within MPMX19_05163at 664.466 kb on - strand, within MPMX19_05163at 664.466 kb on - strand, within MPMX19_05163at 664.466 kb on - strand, within MPMX19_05163at 664.466 kb on - strand, within MPMX19_05163at 664.466 kb on - strand, within MPMX19_05163at 664.466 kb on - strand, within MPMX19_05163at 664.467 kb on + strand, within MPMX19_05163at 664.467 kb on + strand, within MPMX19_05163at 664.467 kb on + strand, within MPMX19_05163at 664.467 kb on + strand, within MPMX19_05163at 664.467 kb on + strand, within MPMX19_05163at 664.468 kb on - strand, within MPMX19_05163at 664.468 kb on - strand, within MPMX19_05163at 664.468 kb on - strand, within MPMX19_05163at 664.468 kb on - strand, within MPMX19_05163at 664.468 kb on - strand, within MPMX19_05163at 664.654 kb on + strand, within MPMX19_05163at 664.654 kb on + strand, within MPMX19_05163at 664.654 kb on + strand, within MPMX19_05163at 664.654 kb on + strand, within MPMX19_05163at 664.655 kb on - strand, within MPMX19_05163at 664.655 kb on - strand, within MPMX19_05163at 664.655 kb on - strand, within MPMX19_05163at 664.717 kb on + strand, within MPMX19_05163at 664.717 kb on + strand, within MPMX19_05163at 664.717 kb on + strand, within MPMX19_05163at 664.717 kb on + strand, within MPMX19_05163at 664.717 kb on + strand, within MPMX19_05163at 664.717 kb on + strand, within MPMX19_05163at 664.717 kb on + strand, within MPMX19_05163at 664.717 kb on + strand, within MPMX19_05163at 664.717 kb on + strand, within MPMX19_05163at 664.718 kb on - strand, within MPMX19_05163at 664.718 kb on - strand, within MPMX19_05163at 664.718 kb on - strand, within MPMX19_05163at 664.718 kb on - strand, within MPMX19_05163at 664.718 kb on - strand, within MPMX19_05163at 664.718 kb on - strand, within MPMX19_05163at 664.807 kb on + strand, within MPMX19_05163at 664.807 kb on + strand, within MPMX19_05163at 664.807 kb on + strand, within MPMX19_05163at 664.807 kb on + strand, within MPMX19_05163at 664.807 kb on + strand, within MPMX19_05163at 664.807 kb on + strand, within MPMX19_05163at 664.807 kb on + strand, within MPMX19_05163at 664.807 kb on + strand, within MPMX19_05163at 664.807 kb on + strand, within MPMX19_05163at 664.807 kb on + strand, within MPMX19_05163at 664.808 kb on - strand, within MPMX19_05163at 664.808 kb on - strand, within MPMX19_05163at 664.808 kb on - strand, within MPMX19_05163at 664.808 kb on - strand, within MPMX19_05163at 664.808 kb on - strand, within MPMX19_05163at 664.808 kb on - strand, within MPMX19_05163at 664.808 kb on - strand, within MPMX19_05163at 664.808 kb on - strand, within MPMX19_05163at 664.808 kb on - strand, within MPMX19_05163at 664.855 kb on + strandat 664.855 kb on + strandat 664.855 kb on + strandat 664.855 kb on + strandat 664.855 kb on + strandat 664.855 kb on + strandat 664.855 kb on + strandat 664.855 kb on + strandat 664.856 kb on - strandat 664.856 kb on - strandat 664.856 kb on - strandat 664.856 kb on - strandat 664.856 kb on - strandat 664.856 kb on - strandat 664.867 kb on + strandat 664.867 kb on + strandat 664.867 kb on + strandat 664.868 kb on - strandat 664.868 kb on - strandat 664.986 kb on + strandat 664.986 kb on + strandat 664.987 kb on - strandat 664.987 kb on - strandat 664.987 kb on - strandat 665.177 kb on + strand, within MPMX19_05164at 665.177 kb on + strand, within MPMX19_05164at 665.178 kb on - strand, within MPMX19_05164at 665.178 kb on - strand, within MPMX19_05164at 665.178 kb on - strand, within MPMX19_05164at 665.178 kb on - strand, within MPMX19_05164at 665.217 kb on + strand, within MPMX19_05164at 665.217 kb on + strand, within MPMX19_05164at 665.217 kb on + strand, within MPMX19_05164at 665.217 kb on + strand, within MPMX19_05164at 665.217 kb on + strand, within MPMX19_05164at 665.217 kb on + strand, within MPMX19_05164at 665.217 kb on + strand, within MPMX19_05164at 665.218 kb on - strand, within MPMX19_05164at 665.218 kb on - strand, within MPMX19_05164at 665.218 kb on - strand, within MPMX19_05164at 665.218 kb on - strand, within MPMX19_05164at 665.218 kb on - strand, within MPMX19_05164at 665.336 kb on + strand, within MPMX19_05164at 665.336 kb on + strand, within MPMX19_05164at 665.336 kb on + strand, within MPMX19_05164at 665.337 kb on - strand, within MPMX19_05164at 665.337 kb on - strand, within MPMX19_05164at 665.337 kb on - strand, within MPMX19_05164at 665.441 kb on + strand, within MPMX19_05164at 665.441 kb on + strand, within MPMX19_05164at 665.441 kb on + strand, within MPMX19_05164at 665.441 kb on + strand, within MPMX19_05164at 665.442 kb on - strand, within MPMX19_05164at 665.456 kb on + strand, within MPMX19_05164at 665.456 kb on + strand, within MPMX19_05164at 665.456 kb on + strand, within MPMX19_05164at 665.457 kb on - strand, within MPMX19_05164at 665.457 kb on - strand, within MPMX19_05164at 665.457 kb on - strand, within MPMX19_05164at 665.457 kb on - strand, within MPMX19_05164at 665.457 kb on - strand, within MPMX19_05164at 665.457 kb on - strand, within MPMX19_05164at 665.457 kb on - strand, within MPMX19_05164at 665.810 kb on + strand, within MPMX19_05164at 665.810 kb on + strand, within MPMX19_05164at 665.810 kb on + strand, within MPMX19_05164at 665.811 kb on - strand, within MPMX19_05164at 665.811 kb on - strand, within MPMX19_05164at 665.811 kb on - strand, within MPMX19_05164at 665.937 kb on + strandat 665.937 kb on + strandat 665.937 kb on + strandat 665.938 kb on - strandat 666.181 kb on + strand, within MPMX19_05165at 666.181 kb on + strand, within MPMX19_05165at 666.181 kb on + strand, within MPMX19_05165at 666.182 kb on - strand, within MPMX19_05165at 666.864 kb on + strandat 666.864 kb on + strandat 666.864 kb on + strandat 666.864 kb on + strandat 666.864 kb on + strandat 666.864 kb on + strandat 666.864 kb on + strandat 666.865 kb on - strandat 666.865 kb on - strandat 666.865 kb on - strandat 666.865 kb on - strandat 666.865 kb on - strandat 666.865 kb on - strandat 666.865 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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664,054 + MPMX19_05163 0.20 -0.6
664,054 + MPMX19_05163 0.20 +0.5
664,054 + MPMX19_05163 0.20 +0.8
664,054 + MPMX19_05163 0.20 +0.1
664,054 + MPMX19_05163 0.20 -0.8
664,054 + MPMX19_05163 0.20 -0.2
664,054 + MPMX19_05163 0.20 +0.5
664,054 + MPMX19_05163 0.20 -0.9
664,055 - MPMX19_05163 0.20 -0.6
664,055 - MPMX19_05163 0.20 -2.9
664,055 - MPMX19_05163 0.20 -1.3
664,055 - MPMX19_05163 0.20 +0.8
664,055 - MPMX19_05163 0.20 +0.1
664,055 - MPMX19_05163 0.20 +0.7
664,055 - MPMX19_05163 0.20 +1.1
664,055 - MPMX19_05163 0.20 +1.1
664,055 - MPMX19_05163 0.20 +0.8
664,055 - MPMX19_05163 0.20 -0.3
664,055 - MPMX19_05163 0.20 -0.0
664,055 - MPMX19_05163 0.20 +0.6
664,055 - MPMX19_05163 0.20 -0.2
664,055 - MPMX19_05163 0.20 -2.8
664,465 + MPMX19_05163 0.57 -0.4
664,465 + MPMX19_05163 0.57 -0.6
664,465 + MPMX19_05163 0.57 -0.7
664,465 + MPMX19_05163 0.57 -1.2
664,465 + MPMX19_05163 0.57 -1.8
664,465 + MPMX19_05163 0.57 -1.6
664,465 + MPMX19_05163 0.57 -1.6
664,465 + MPMX19_05163 0.57 -1.8
664,465 + MPMX19_05163 0.57 -0.0
664,466 - MPMX19_05163 0.57 +0.3
664,466 - MPMX19_05163 0.57 -0.4
664,466 - MPMX19_05163 0.57 +0.8
664,466 - MPMX19_05163 0.57 -0.6
664,466 - MPMX19_05163 0.57 +0.7
664,466 - MPMX19_05163 0.57 -1.1
664,466 - MPMX19_05163 0.57 -0.6
664,466 - MPMX19_05163 0.57 +0.7
664,467 + MPMX19_05163 0.57 -2.0
664,467 + MPMX19_05163 0.57 -1.0
664,467 + MPMX19_05163 0.57 -1.5
664,467 + MPMX19_05163 0.57 -1.4
664,467 + MPMX19_05163 0.57 +0.5
664,468 - MPMX19_05163 0.57 +0.1
664,468 - MPMX19_05163 0.57 -0.5
664,468 - MPMX19_05163 0.57 +0.4
664,468 - MPMX19_05163 0.57 +1.1
664,468 - MPMX19_05163 0.57 -1.6
664,654 + MPMX19_05163 0.74 -0.9
664,654 + MPMX19_05163 0.74 -0.4
664,654 + MPMX19_05163 0.74 -0.5
664,654 + MPMX19_05163 0.74 -0.2
664,655 - MPMX19_05163 0.75 +0.5
664,655 - MPMX19_05163 0.75 +0.4
664,655 - MPMX19_05163 0.75 -0.1
664,717 + MPMX19_05163 0.80 -1.5
664,717 + MPMX19_05163 0.80 +0.5
664,717 + MPMX19_05163 0.80 -2.1
664,717 + MPMX19_05163 0.80 +0.6
664,717 + MPMX19_05163 0.80 -0.3
664,717 + MPMX19_05163 0.80 -1.8
664,717 + MPMX19_05163 0.80 -0.7
664,717 + MPMX19_05163 0.80 +0.1
664,717 + MPMX19_05163 0.80 -0.5
664,718 - MPMX19_05163 0.80 -0.3
664,718 - MPMX19_05163 0.80 -0.3
664,718 - MPMX19_05163 0.80 +0.1
664,718 - MPMX19_05163 0.80 -1.1
664,718 - MPMX19_05163 0.80 -0.3
664,718 - MPMX19_05163 0.80 -0.5
664,807 + MPMX19_05163 0.88 -0.6
664,807 + MPMX19_05163 0.88 -0.3
664,807 + MPMX19_05163 0.88 +0.7
664,807 + MPMX19_05163 0.88 -0.9
664,807 + MPMX19_05163 0.88 -0.1
664,807 + MPMX19_05163 0.88 +0.7
664,807 + MPMX19_05163 0.88 +1.1
664,807 + MPMX19_05163 0.88 -0.7
664,807 + MPMX19_05163 0.88 -1.1
664,807 + MPMX19_05163 0.88 -0.6
664,808 - MPMX19_05163 0.89 -0.6
664,808 - MPMX19_05163 0.89 +0.9
664,808 - MPMX19_05163 0.89 -2.0
664,808 - MPMX19_05163 0.89 +0.2
664,808 - MPMX19_05163 0.89 -0.9
664,808 - MPMX19_05163 0.89 -0.6
664,808 - MPMX19_05163 0.89 +0.5
664,808 - MPMX19_05163 0.89 -0.6
664,808 - MPMX19_05163 0.89 -0.5
664,855 + -0.1
664,855 + -2.3
664,855 + -0.4
664,855 + +0.7
664,855 + -0.5
664,855 + -0.0
664,855 + -0.4
664,855 + +0.5
664,856 - -0.8
664,856 - +0.7
664,856 - -0.3
664,856 - +0.2
664,856 - -0.7
664,856 - -2.0
664,867 + +0.1
664,867 + -0.3
664,867 + -0.5
664,868 - -1.2
664,868 - +0.5
664,986 + +0.7
664,986 + -0.2
664,987 - -0.0
664,987 - -0.2
664,987 - -0.3
665,177 + MPMX19_05164 0.24 -0.5
665,177 + MPMX19_05164 0.24 -0.4
665,178 - MPMX19_05164 0.24 +0.5
665,178 - MPMX19_05164 0.24 +0.1
665,178 - MPMX19_05164 0.24 -2.8
665,178 - MPMX19_05164 0.24 +1.2
665,217 + MPMX19_05164 0.28 -1.7
665,217 + MPMX19_05164 0.28 -0.2
665,217 + MPMX19_05164 0.28 -0.9
665,217 + MPMX19_05164 0.28 -2.0
665,217 + MPMX19_05164 0.28 -0.1
665,217 + MPMX19_05164 0.28 -1.8
665,217 + MPMX19_05164 0.28 -2.6
665,218 - MPMX19_05164 0.28 -2.1
665,218 - MPMX19_05164 0.28 +0.5
665,218 - MPMX19_05164 0.28 -0.9
665,218 - MPMX19_05164 0.28 +0.4
665,218 - MPMX19_05164 0.28 -1.6
665,336 + MPMX19_05164 0.40 -1.3
665,336 + MPMX19_05164 0.40 -0.1
665,336 + MPMX19_05164 0.40 +0.3
665,337 - MPMX19_05164 0.40 -0.6
665,337 - MPMX19_05164 0.40 +0.9
665,337 - MPMX19_05164 0.40 -1.9
665,441 + MPMX19_05164 0.50 +0.0
665,441 + MPMX19_05164 0.50 +0.3
665,441 + MPMX19_05164 0.50 +1.1
665,441 + MPMX19_05164 0.50 +0.1
665,442 - MPMX19_05164 0.50 +0.5
665,456 + MPMX19_05164 0.52 -0.5
665,456 + MPMX19_05164 0.52 -1.0
665,456 + MPMX19_05164 0.52 +1.2
665,457 - MPMX19_05164 0.52 -2.5
665,457 - MPMX19_05164 0.52 -0.8
665,457 - MPMX19_05164 0.52 -1.2
665,457 - MPMX19_05164 0.52 -0.2
665,457 - MPMX19_05164 0.52 -0.6
665,457 - MPMX19_05164 0.52 -1.0
665,457 - MPMX19_05164 0.52 -0.6
665,810 + MPMX19_05164 0.87 -0.6
665,810 + MPMX19_05164 0.87 -0.1
665,810 + MPMX19_05164 0.87 -0.9
665,811 - MPMX19_05164 0.87 -1.4
665,811 - MPMX19_05164 0.87 -0.5
665,811 - MPMX19_05164 0.87 -1.4
665,937 + -1.3
665,937 + -0.9
665,937 + -1.5
665,938 - +1.3
666,181 + MPMX19_05165 0.31 -0.3
666,181 + MPMX19_05165 0.31 -1.3
666,181 + MPMX19_05165 0.31 -0.9
666,182 - MPMX19_05165 0.31 -0.6
666,864 + +0.1
666,864 + +0.4
666,864 + +1.7
666,864 + -0.5
666,864 + -0.5
666,864 + -1.3
666,864 + -0.6
666,865 - +0.7
666,865 - +0.1
666,865 - -0.3
666,865 - -0.8
666,865 - -0.0
666,865 - -0.6
666,865 - -0.4

Or see this region's nucleotide sequence