Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04107 and MPMX19_04108 overlap by 4 nucleotides MPMX19_04108 and MPMX19_04109 are separated by 10 nucleotides MPMX19_04109 and MPMX19_04110 are separated by 72 nucleotides
MPMX19_04107: MPMX19_04107 - Sensor histidine kinase RcsC, at 412,256 to 415,762
_04107
MPMX19_04108: MPMX19_04108 - Protein-glutamate methylesterase/protein-glutamine glutaminase, at 415,759 to 416,670
_04108
MPMX19_04109: MPMX19_04109 - hypothetical protein, at 416,681 to 417,502
_04109
MPMX19_04110: MPMX19_04110 - Bifunctional protein PaaZ, at 417,575 to 418,042
_04110
Position (kb) 415
416
417 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 414.983 kb on + strand, within MPMX19_04107 at 414.983 kb on + strand, within MPMX19_04107 at 414.984 kb on - strand, within MPMX19_04107 at 414.984 kb on - strand, within MPMX19_04107 at 415.247 kb on + strand, within MPMX19_04107 at 415.547 kb on + strand at 415.547 kb on + strand at 415.547 kb on + strand at 415.547 kb on + strand at 415.547 kb on + strand at 415.547 kb on + strand at 415.547 kb on + strand at 415.547 kb on + strand at 415.547 kb on + strand at 415.548 kb on - strand at 415.548 kb on - strand at 415.548 kb on - strand at 415.548 kb on - strand at 415.548 kb on - strand at 415.548 kb on - strand at 415.548 kb on - strand at 415.548 kb on - strand at 415.549 kb on + strand at 415.549 kb on + strand at 415.549 kb on + strand at 415.549 kb on + strand at 415.549 kb on + strand at 415.549 kb on + strand at 415.549 kb on + strand at 415.549 kb on + strand at 415.549 kb on + strand at 415.550 kb on - strand at 415.550 kb on - strand at 415.550 kb on - strand at 415.550 kb on - strand at 415.658 kb on + strand at 415.658 kb on + strand at 415.658 kb on + strand at 415.658 kb on + strand at 415.658 kb on + strand at 415.658 kb on + strand at 415.658 kb on + strand at 415.658 kb on + strand at 415.658 kb on + strand at 415.658 kb on + strand at 415.658 kb on + strand at 415.658 kb on + strand at 415.658 kb on + strand at 415.658 kb on + strand at 415.658 kb on + strand at 415.658 kb on + strand at 415.658 kb on + strand at 415.658 kb on + strand at 415.658 kb on + strand at 415.658 kb on + strand at 415.658 kb on + strand at 415.658 kb on + strand at 415.658 kb on + strand at 415.658 kb on + strand at 415.659 kb on - strand at 415.659 kb on - strand at 415.659 kb on - strand at 415.659 kb on - strand at 415.659 kb on - strand at 415.659 kb on - strand at 415.659 kb on - strand at 415.659 kb on - strand at 415.659 kb on - strand at 415.659 kb on - strand at 415.659 kb on - strand at 415.659 kb on - strand at 415.659 kb on - strand at 415.660 kb on + strand at 415.660 kb on + strand at 415.660 kb on + strand at 415.660 kb on + strand at 415.660 kb on + strand at 415.660 kb on + strand at 415.660 kb on + strand at 415.660 kb on + strand at 415.660 kb on + strand at 415.660 kb on + strand at 415.660 kb on + strand at 415.660 kb on + strand at 415.660 kb on + strand at 415.660 kb on + strand at 415.660 kb on + strand at 415.660 kb on + strand at 415.660 kb on + strand at 415.660 kb on + strand at 415.660 kb on + strand at 415.660 kb on + strand at 415.660 kb on + strand at 415.660 kb on + strand at 415.660 kb on + strand at 415.660 kb on + strand at 415.660 kb on + strand at 415.660 kb on + strand at 415.660 kb on + strand at 415.661 kb on - strand at 415.661 kb on - strand at 415.661 kb on - strand at 415.661 kb on - strand at 415.661 kb on - strand at 415.661 kb on - strand at 415.661 kb on - strand at 415.661 kb on - strand at 415.661 kb on - strand at 415.661 kb on - strand at 415.661 kb on - strand at 415.661 kb on - strand at 415.661 kb on - strand at 415.661 kb on - strand at 415.661 kb on - strand at 415.661 kb on - strand at 415.661 kb on - strand at 415.661 kb on - strand at 415.661 kb on - strand at 415.661 kb on - strand at 415.661 kb on - strand at 415.661 kb on - strand at 415.661 kb on - strand at 415.661 kb on - strand at 415.661 kb on - strand at 415.661 kb on - strand at 415.661 kb on - strand at 415.661 kb on - strand at 415.661 kb on - strand at 416.068 kb on + strand, within MPMX19_04108 at 416.068 kb on + strand, within MPMX19_04108 at 416.068 kb on + strand, within MPMX19_04108 at 416.068 kb on + strand, within MPMX19_04108 at 416.068 kb on + strand, within MPMX19_04108 at 416.068 kb on + strand, within MPMX19_04108 at 416.068 kb on + strand, within MPMX19_04108 at 416.068 kb on + strand, within MPMX19_04108 at 416.068 kb on + strand, within MPMX19_04108 at 416.068 kb on + strand, within MPMX19_04108 at 416.068 kb on + strand, within MPMX19_04108 at 416.069 kb on - strand, within MPMX19_04108 at 416.069 kb on - strand, within MPMX19_04108 at 416.069 kb on - strand, within MPMX19_04108 at 416.069 kb on - strand, within MPMX19_04108 at 416.069 kb on - strand, within MPMX19_04108 at 416.069 kb on - strand, within MPMX19_04108 at 416.069 kb on - strand, within MPMX19_04108 at 416.069 kb on - strand, within MPMX19_04108 at 416.069 kb on - strand, within MPMX19_04108 at 416.069 kb on - strand, within MPMX19_04108 at 416.143 kb on + strand, within MPMX19_04108 at 416.143 kb on + strand, within MPMX19_04108 at 416.144 kb on - strand, within MPMX19_04108 at 416.144 kb on - strand, within MPMX19_04108 at 416.144 kb on - strand, within MPMX19_04108 at 416.144 kb on - strand, within MPMX19_04108 at 416.386 kb on + strand, within MPMX19_04108 at 416.386 kb on + strand, within MPMX19_04108 at 416.386 kb on + strand, within MPMX19_04108 at 416.386 kb on + strand, within MPMX19_04108 at 416.386 kb on + strand, within MPMX19_04108 at 416.386 kb on + strand, within MPMX19_04108 at 416.386 kb on + strand, within MPMX19_04108 at 416.386 kb on + strand, within MPMX19_04108 at 416.386 kb on + strand, within MPMX19_04108 at 416.386 kb on + strand, within MPMX19_04108 at 416.387 kb on - strand, within MPMX19_04108 at 416.387 kb on - strand, within MPMX19_04108 at 416.387 kb on - strand, within MPMX19_04108 at 416.387 kb on - strand, within MPMX19_04108 at 416.387 kb on - strand, within MPMX19_04108 at 416.387 kb on - strand, within MPMX19_04108 at 416.387 kb on - strand, within MPMX19_04108 at 416.387 kb on - strand, within MPMX19_04108 at 416.387 kb on - strand, within MPMX19_04108 at 416.387 kb on - strand, within MPMX19_04108 at 416.387 kb on - strand, within MPMX19_04108 at 416.387 kb on - strand, within MPMX19_04108 at 416.387 kb on - strand, within MPMX19_04108 at 416.387 kb on - strand, within MPMX19_04108 at 416.413 kb on + strand, within MPMX19_04108 at 416.413 kb on + strand, within MPMX19_04108 at 416.413 kb on + strand, within MPMX19_04108 at 416.413 kb on + strand, within MPMX19_04108 at 416.413 kb on + strand, within MPMX19_04108 at 416.413 kb on + strand, within MPMX19_04108 at 416.413 kb on + strand, within MPMX19_04108 at 416.413 kb on + strand, within MPMX19_04108 at 416.413 kb on + strand, within MPMX19_04108 at 416.413 kb on + strand, within MPMX19_04108 at 416.413 kb on + strand, within MPMX19_04108 at 416.414 kb on - strand, within MPMX19_04108 at 416.414 kb on - strand, within MPMX19_04108 at 416.414 kb on - strand, within MPMX19_04108 at 416.414 kb on - strand, within MPMX19_04108 at 416.414 kb on - strand, within MPMX19_04108 at 416.414 kb on - strand, within MPMX19_04108 at 416.414 kb on - strand, within MPMX19_04108 at 416.414 kb on - strand, within MPMX19_04108 at 416.414 kb on - strand, within MPMX19_04108 at 416.414 kb on - strand, within MPMX19_04108 at 416.414 kb on - strand, within MPMX19_04108 at 416.568 kb on + strand, within MPMX19_04108 at 416.568 kb on + strand, within MPMX19_04108 at 416.568 kb on + strand, within MPMX19_04108 at 416.742 kb on + strand at 416.742 kb on + strand at 416.742 kb on + strand at 416.743 kb on - strand at 416.743 kb on - strand at 416.799 kb on + strand, within MPMX19_04109 at 416.800 kb on - strand, within MPMX19_04109 at 416.817 kb on + strand, within MPMX19_04109 at 416.817 kb on + strand, within MPMX19_04109 at 416.817 kb on + strand, within MPMX19_04109 at 416.817 kb on + strand, within MPMX19_04109 at 416.818 kb on - strand, within MPMX19_04109 at 416.818 kb on - strand, within MPMX19_04109 at 416.818 kb on - strand, within MPMX19_04109 at 416.818 kb on - strand, within MPMX19_04109 at 416.818 kb on - strand, within MPMX19_04109 at 416.896 kb on - strand, within MPMX19_04109 at 417.130 kb on - strand, within MPMX19_04109 at 417.130 kb on - strand, within MPMX19_04109 at 417.237 kb on + strand, within MPMX19_04109 at 417.237 kb on + strand, within MPMX19_04109 at 417.237 kb on + strand, within MPMX19_04109 at 417.237 kb on + strand, within MPMX19_04109 at 417.237 kb on + strand, within MPMX19_04109 at 417.237 kb on + strand, within MPMX19_04109 at 417.237 kb on + strand, within MPMX19_04109 at 417.237 kb on + strand, within MPMX19_04109 at 417.237 kb on + strand, within MPMX19_04109 at 417.237 kb on + strand, within MPMX19_04109 at 417.237 kb on + strand, within MPMX19_04109 at 417.237 kb on + strand, within MPMX19_04109 at 417.237 kb on + strand, within MPMX19_04109 at 417.237 kb on + strand, within MPMX19_04109 at 417.238 kb on - strand, within MPMX19_04109 at 417.238 kb on - strand, within MPMX19_04109 at 417.238 kb on - strand, within MPMX19_04109 at 417.238 kb on - strand, within MPMX19_04109 at 417.238 kb on - strand, within MPMX19_04109 at 417.238 kb on - strand, within MPMX19_04109 at 417.238 kb on - strand, within MPMX19_04109 at 417.238 kb on - strand, within MPMX19_04109 at 417.238 kb on - strand, within MPMX19_04109 at 417.361 kb on + strand, within MPMX19_04109 at 417.445 kb on + strand at 417.446 kb on - strand at 417.538 kb on + strand at 417.538 kb on + strand at 417.538 kb on + strand at 417.538 kb on + strand at 417.539 kb on - strand at 417.539 kb on - strand at 417.539 kb on - strand at 417.539 kb on - strand at 417.539 kb on - strand at 417.539 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 414,983 + MPMX19_04107 0.78 -0.2 414,983 + MPMX19_04107 0.78 -0.1 414,984 - MPMX19_04107 0.78 +0.8 414,984 - MPMX19_04107 0.78 -0.2 415,247 + MPMX19_04107 0.85 -0.8 415,547 + +0.4 415,547 + -0.9 415,547 + -1.0 415,547 + +0.8 415,547 + -0.7 415,547 + -0.6 415,547 + -1.0 415,547 + -0.3 415,547 + -1.0 415,548 - +0.5 415,548 - -1.2 415,548 - -1.8 415,548 - -0.8 415,548 - +0.1 415,548 - -0.6 415,548 - -0.9 415,548 - +0.8 415,549 + -0.7 415,549 + -1.0 415,549 + +0.2 415,549 + -0.0 415,549 + -0.5 415,549 + +0.3 415,549 + +0.6 415,549 + -0.2 415,549 + -2.7 415,550 - -1.2 415,550 - -0.2 415,550 - -0.5 415,550 - +0.5 415,658 + -0.1 415,658 + -0.4 415,658 + +0.5 415,658 + +0.2 415,658 + -0.1 415,658 + -0.9 415,658 + +0.4 415,658 + +0.2 415,658 + +0.3 415,658 + -0.2 415,658 + +0.1 415,658 + +2.8 415,658 + +0.3 415,658 + -0.2 415,658 + +1.1 415,658 + -0.8 415,658 + -1.4 415,658 + +0.4 415,658 + -2.2 415,658 + -0.2 415,658 + -0.7 415,658 + -1.7 415,658 + -0.2 415,658 + -0.9 415,659 - +0.2 415,659 - -0.1 415,659 - -1.5 415,659 - -0.2 415,659 - -1.5 415,659 - +0.1 415,659 - -3.0 415,659 - +1.1 415,659 - -0.8 415,659 - -0.3 415,659 - -0.3 415,659 - +1.4 415,659 - -0.7 415,660 + +0.3 415,660 + -1.0 415,660 + -1.0 415,660 + +0.8 415,660 + -0.7 415,660 + +0.5 415,660 + -1.0 415,660 + +0.5 415,660 + -0.8 415,660 + +0.4 415,660 + -0.7 415,660 + -1.5 415,660 + -0.0 415,660 + -1.4 415,660 + -0.3 415,660 + +0.8 415,660 + -0.6 415,660 + -1.7 415,660 + -1.0 415,660 + +1.9 415,660 + -0.2 415,660 + +1.2 415,660 + -0.2 415,660 + -0.6 415,660 + -1.3 415,660 + -1.4 415,660 + -2.0 415,661 - -0.2 415,661 - -1.0 415,661 - -0.1 415,661 - -1.9 415,661 - -1.8 415,661 - -1.7 415,661 - +1.3 415,661 - -0.1 415,661 - -1.3 415,661 - -0.4 415,661 - -0.4 415,661 - -1.0 415,661 - -0.3 415,661 - -1.4 415,661 - -0.3 415,661 - +0.1 415,661 - +0.1 415,661 - +0.0 415,661 - -0.8 415,661 - -0.5 415,661 - +0.1 415,661 - +1.2 415,661 - +1.4 415,661 - +0.4 415,661 - -0.0 415,661 - -0.9 415,661 - -0.6 415,661 - +0.8 415,661 - -0.9 416,068 + MPMX19_04108 0.34 -0.8 416,068 + MPMX19_04108 0.34 +0.4 416,068 + MPMX19_04108 0.34 +1.0 416,068 + MPMX19_04108 0.34 +0.2 416,068 + MPMX19_04108 0.34 -1.6 416,068 + MPMX19_04108 0.34 -1.0 416,068 + MPMX19_04108 0.34 -1.0 416,068 + MPMX19_04108 0.34 +0.6 416,068 + MPMX19_04108 0.34 -1.0 416,068 + MPMX19_04108 0.34 +1.2 416,068 + MPMX19_04108 0.34 -0.5 416,069 - MPMX19_04108 0.34 +0.3 416,069 - MPMX19_04108 0.34 +0.8 416,069 - MPMX19_04108 0.34 +0.2 416,069 - MPMX19_04108 0.34 +0.2 416,069 - MPMX19_04108 0.34 -0.0 416,069 - MPMX19_04108 0.34 +1.0 416,069 - MPMX19_04108 0.34 -0.5 416,069 - MPMX19_04108 0.34 +0.5 416,069 - MPMX19_04108 0.34 -1.0 416,069 - MPMX19_04108 0.34 -1.4 416,143 + MPMX19_04108 0.42 -0.4 416,143 + MPMX19_04108 0.42 -2.1 416,144 - MPMX19_04108 0.42 -1.2 416,144 - MPMX19_04108 0.42 +1.0 416,144 - MPMX19_04108 0.42 -0.4 416,144 - MPMX19_04108 0.42 -0.8 416,386 + MPMX19_04108 0.69 +0.6 416,386 + MPMX19_04108 0.69 -0.1 416,386 + MPMX19_04108 0.69 +1.1 416,386 + MPMX19_04108 0.69 +0.5 416,386 + MPMX19_04108 0.69 +0.2 416,386 + MPMX19_04108 0.69 -0.9 416,386 + MPMX19_04108 0.69 -0.8 416,386 + MPMX19_04108 0.69 -0.7 416,386 + MPMX19_04108 0.69 -1.5 416,386 + MPMX19_04108 0.69 -1.2 416,387 - MPMX19_04108 0.69 +1.1 416,387 - MPMX19_04108 0.69 -1.0 416,387 - MPMX19_04108 0.69 -1.4 416,387 - MPMX19_04108 0.69 +0.2 416,387 - MPMX19_04108 0.69 -0.5 416,387 - MPMX19_04108 0.69 +0.2 416,387 - MPMX19_04108 0.69 +0.6 416,387 - MPMX19_04108 0.69 -0.9 416,387 - MPMX19_04108 0.69 +0.5 416,387 - MPMX19_04108 0.69 +0.8 416,387 - MPMX19_04108 0.69 +0.6 416,387 - MPMX19_04108 0.69 -1.5 416,387 - MPMX19_04108 0.69 -1.1 416,387 - MPMX19_04108 0.69 +1.7 416,413 + MPMX19_04108 0.72 -0.9 416,413 + MPMX19_04108 0.72 -0.1 416,413 + MPMX19_04108 0.72 -0.5 416,413 + MPMX19_04108 0.72 +0.4 416,413 + MPMX19_04108 0.72 -0.8 416,413 + MPMX19_04108 0.72 +1.4 416,413 + MPMX19_04108 0.72 -1.1 416,413 + MPMX19_04108 0.72 +0.8 416,413 + MPMX19_04108 0.72 -1.0 416,413 + MPMX19_04108 0.72 -0.5 416,413 + MPMX19_04108 0.72 +0.1 416,414 - MPMX19_04108 0.72 -0.0 416,414 - MPMX19_04108 0.72 +0.1 416,414 - MPMX19_04108 0.72 +0.2 416,414 - MPMX19_04108 0.72 -0.2 416,414 - MPMX19_04108 0.72 -0.8 416,414 - MPMX19_04108 0.72 -1.8 416,414 - MPMX19_04108 0.72 -1.5 416,414 - MPMX19_04108 0.72 +1.8 416,414 - MPMX19_04108 0.72 -1.7 416,414 - MPMX19_04108 0.72 +0.8 416,414 - MPMX19_04108 0.72 -1.0 416,568 + MPMX19_04108 0.89 -1.1 416,568 + MPMX19_04108 0.89 +0.2 416,568 + MPMX19_04108 0.89 -0.1 416,742 + +1.5 416,742 + +0.2 416,742 + -0.5 416,743 - -1.2 416,743 - -0.4 416,799 + MPMX19_04109 0.14 -0.2 416,800 - MPMX19_04109 0.14 -0.4 416,817 + MPMX19_04109 0.17 +0.6 416,817 + MPMX19_04109 0.17 +0.8 416,817 + MPMX19_04109 0.17 -0.5 416,817 + MPMX19_04109 0.17 -0.3 416,818 - MPMX19_04109 0.17 +0.2 416,818 - MPMX19_04109 0.17 +0.2 416,818 - MPMX19_04109 0.17 -0.8 416,818 - MPMX19_04109 0.17 -0.8 416,818 - MPMX19_04109 0.17 -1.5 416,896 - MPMX19_04109 0.26 -0.1 417,130 - MPMX19_04109 0.55 -0.8 417,130 - MPMX19_04109 0.55 -1.8 417,237 + MPMX19_04109 0.68 -0.7 417,237 + MPMX19_04109 0.68 -0.9 417,237 + MPMX19_04109 0.68 -0.2 417,237 + MPMX19_04109 0.68 +0.4 417,237 + MPMX19_04109 0.68 +0.4 417,237 + MPMX19_04109 0.68 +1.0 417,237 + MPMX19_04109 0.68 +1.2 417,237 + MPMX19_04109 0.68 +0.4 417,237 + MPMX19_04109 0.68 -0.5 417,237 + MPMX19_04109 0.68 +0.8 417,237 + MPMX19_04109 0.68 -0.5 417,237 + MPMX19_04109 0.68 -1.3 417,237 + MPMX19_04109 0.68 +1.0 417,237 + MPMX19_04109 0.68 -1.5 417,238 - MPMX19_04109 0.68 -1.0 417,238 - MPMX19_04109 0.68 +1.8 417,238 - MPMX19_04109 0.68 -0.1 417,238 - MPMX19_04109 0.68 -1.2 417,238 - MPMX19_04109 0.68 -0.6 417,238 - MPMX19_04109 0.68 +0.2 417,238 - MPMX19_04109 0.68 -1.5 417,238 - MPMX19_04109 0.68 -0.0 417,238 - MPMX19_04109 0.68 +0.5 417,361 + MPMX19_04109 0.83 +0.2 417,445 + -1.0 417,446 - -0.4 417,538 + -0.0 417,538 + +0.1 417,538 + -0.2 417,538 + +1.2 417,539 - -0.0 417,539 - +0.2 417,539 - +1.6 417,539 - +0.2 417,539 - -0.5 417,539 - +0.5
Or see this region's nucleotide sequence