Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03980

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03979 and MPMX19_03980 are separated by 165 nucleotidesMPMX19_03980 and MPMX19_03981 are separated by 49 nucleotidesMPMX19_03981 and MPMX19_03982 are separated by 282 nucleotides MPMX19_03979: MPMX19_03979 - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, at 269,736 to 271,187 _03979 MPMX19_03980: MPMX19_03980 - Sensor protein FixL, at 271,353 to 273,155 _03980 MPMX19_03981: MPMX19_03981 - hypothetical protein, at 273,205 to 273,441 _03981 MPMX19_03982: MPMX19_03982 - tRNA-Ser, at 273,724 to 273,816 _03982 Position (kb) 271 272 273 274Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 271.287 kb on - strandat 271.428 kb on + strandat 271.429 kb on - strandat 271.429 kb on - strandat 271.746 kb on + strand, within MPMX19_03980at 271.746 kb on + strand, within MPMX19_03980at 271.746 kb on + strand, within MPMX19_03980at 271.746 kb on + strand, within MPMX19_03980at 271.746 kb on + strand, within MPMX19_03980at 271.746 kb on + strand, within MPMX19_03980at 271.747 kb on - strand, within MPMX19_03980at 271.747 kb on - strand, within MPMX19_03980at 271.747 kb on - strand, within MPMX19_03980at 271.747 kb on - strand, within MPMX19_03980at 271.752 kb on + strand, within MPMX19_03980at 271.752 kb on + strand, within MPMX19_03980at 271.752 kb on + strand, within MPMX19_03980at 271.752 kb on + strand, within MPMX19_03980at 271.753 kb on - strand, within MPMX19_03980at 271.753 kb on - strand, within MPMX19_03980at 271.753 kb on - strand, within MPMX19_03980at 271.753 kb on - strand, within MPMX19_03980at 271.758 kb on + strand, within MPMX19_03980at 271.758 kb on + strand, within MPMX19_03980at 271.758 kb on + strand, within MPMX19_03980at 271.759 kb on - strand, within MPMX19_03980at 271.759 kb on - strand, within MPMX19_03980at 271.845 kb on + strand, within MPMX19_03980at 271.845 kb on + strand, within MPMX19_03980at 271.845 kb on + strand, within MPMX19_03980at 271.845 kb on + strand, within MPMX19_03980at 271.846 kb on - strand, within MPMX19_03980at 271.945 kb on + strand, within MPMX19_03980at 272.058 kb on + strand, within MPMX19_03980at 272.058 kb on + strand, within MPMX19_03980at 272.058 kb on + strand, within MPMX19_03980at 272.059 kb on - strand, within MPMX19_03980at 272.059 kb on - strand, within MPMX19_03980at 272.059 kb on - strand, within MPMX19_03980at 272.226 kb on + strand, within MPMX19_03980at 272.226 kb on + strand, within MPMX19_03980at 272.226 kb on + strand, within MPMX19_03980at 272.226 kb on + strand, within MPMX19_03980at 272.226 kb on + strand, within MPMX19_03980at 272.226 kb on + strand, within MPMX19_03980at 272.227 kb on - strand, within MPMX19_03980at 272.227 kb on - strand, within MPMX19_03980at 272.227 kb on - strand, within MPMX19_03980at 272.227 kb on - strand, within MPMX19_03980at 272.227 kb on - strand, within MPMX19_03980at 272.227 kb on - strand, within MPMX19_03980at 272.227 kb on - strand, within MPMX19_03980at 272.634 kb on + strand, within MPMX19_03980at 272.634 kb on + strand, within MPMX19_03980at 272.634 kb on + strand, within MPMX19_03980at 272.634 kb on + strand, within MPMX19_03980at 272.634 kb on + strand, within MPMX19_03980at 272.634 kb on + strand, within MPMX19_03980at 272.634 kb on + strand, within MPMX19_03980at 272.634 kb on + strand, within MPMX19_03980at 272.634 kb on + strand, within MPMX19_03980at 272.634 kb on + strand, within MPMX19_03980at 272.634 kb on + strand, within MPMX19_03980at 272.634 kb on + strand, within MPMX19_03980at 272.635 kb on - strand, within MPMX19_03980at 272.635 kb on - strand, within MPMX19_03980at 272.635 kb on - strand, within MPMX19_03980at 272.635 kb on - strand, within MPMX19_03980at 272.635 kb on - strand, within MPMX19_03980at 272.635 kb on - strand, within MPMX19_03980at 272.635 kb on - strand, within MPMX19_03980at 272.635 kb on - strand, within MPMX19_03980at 272.635 kb on - strand, within MPMX19_03980at 272.635 kb on - strand, within MPMX19_03980at 272.635 kb on - strand, within MPMX19_03980at 272.635 kb on - strand, within MPMX19_03980at 272.637 kb on - strand, within MPMX19_03980at 272.637 kb on - strand, within MPMX19_03980at 272.637 kb on - strand, within MPMX19_03980at 272.790 kb on + strand, within MPMX19_03980at 272.790 kb on + strand, within MPMX19_03980at 272.790 kb on + strand, within MPMX19_03980at 272.791 kb on - strand, within MPMX19_03980at 272.791 kb on - strand, within MPMX19_03980at 272.791 kb on - strand, within MPMX19_03980at 273.539 kb on + strandat 273.540 kb on - strandat 273.540 kb on - strandat 273.540 kb on - strandat 273.559 kb on + strandat 273.559 kb on + strandat 273.559 kb on + strandat 273.559 kb on + strandat 273.559 kb on + strandat 273.559 kb on + strandat 273.559 kb on + strandat 273.560 kb on - strandat 273.560 kb on - strandat 273.560 kb on - strandat 273.560 kb on - strandat 273.560 kb on - strandat 273.560 kb on - strandat 273.560 kb on - strandat 273.560 kb on - strandat 273.560 kb on - strandat 273.560 kb on - strandat 273.647 kb on + strandat 273.647 kb on + strandat 273.856 kb on - strandat 273.856 kb on - strandat 273.898 kb on + strandat 273.898 kb on + strandat 273.898 kb on + strandat 273.899 kb on - strandat 273.974 kb on + strandat 273.974 kb on + strandat 273.974 kb on + strandat 273.974 kb on + strandat 273.974 kb on + strandat 273.975 kb on - strandat 273.995 kb on + strandat 273.995 kb on + strandat 273.995 kb on + strandat 273.995 kb on + strandat 274.027 kb on + strandat 274.027 kb on + strandat 274.027 kb on + strandat 274.027 kb on + strandat 274.027 kb on + strandat 274.028 kb on - strandat 274.028 kb on - strandat 274.028 kb on - strandat 274.028 kb on - strandat 274.028 kb on - strandat 274.028 kb on - strandat 274.082 kb on + strandat 274.082 kb on + strandat 274.082 kb on + strandat 274.082 kb on + strandat 274.083 kb on - strandat 274.083 kb on - strandat 274.083 kb on - strandat 274.083 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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271,287 - -1.4
271,428 + -0.5
271,429 - +0.9
271,429 - -1.9
271,746 + MPMX19_03980 0.22 -0.9
271,746 + MPMX19_03980 0.22 -0.5
271,746 + MPMX19_03980 0.22 -2.9
271,746 + MPMX19_03980 0.22 +0.8
271,746 + MPMX19_03980 0.22 -0.8
271,746 + MPMX19_03980 0.22 +0.1
271,747 - MPMX19_03980 0.22 +0.6
271,747 - MPMX19_03980 0.22 -1.3
271,747 - MPMX19_03980 0.22 +0.3
271,747 - MPMX19_03980 0.22 -2.7
271,752 + MPMX19_03980 0.22 -0.5
271,752 + MPMX19_03980 0.22 -0.5
271,752 + MPMX19_03980 0.22 -0.3
271,752 + MPMX19_03980 0.22 -0.3
271,753 - MPMX19_03980 0.22 -0.7
271,753 - MPMX19_03980 0.22 -0.9
271,753 - MPMX19_03980 0.22 -0.5
271,753 - MPMX19_03980 0.22 -0.5
271,758 + MPMX19_03980 0.22 -0.1
271,758 + MPMX19_03980 0.22 -2.7
271,758 + MPMX19_03980 0.22 -0.1
271,759 - MPMX19_03980 0.23 +0.7
271,759 - MPMX19_03980 0.23 +1.6
271,845 + MPMX19_03980 0.27 +1.8
271,845 + MPMX19_03980 0.27 -1.1
271,845 + MPMX19_03980 0.27 -0.0
271,845 + MPMX19_03980 0.27 -0.7
271,846 - MPMX19_03980 0.27 -0.2
271,945 + MPMX19_03980 0.33 -0.5
272,058 + MPMX19_03980 0.39 +1.8
272,058 + MPMX19_03980 0.39 -1.0
272,058 + MPMX19_03980 0.39 +0.3
272,059 - MPMX19_03980 0.39 -0.0
272,059 - MPMX19_03980 0.39 -1.7
272,059 - MPMX19_03980 0.39 +0.6
272,226 + MPMX19_03980 0.48 -0.9
272,226 + MPMX19_03980 0.48 -1.2
272,226 + MPMX19_03980 0.48 -1.8
272,226 + MPMX19_03980 0.48 -0.4
272,226 + MPMX19_03980 0.48 +1.1
272,226 + MPMX19_03980 0.48 -0.9
272,227 - MPMX19_03980 0.48 -1.8
272,227 - MPMX19_03980 0.48 -0.9
272,227 - MPMX19_03980 0.48 +0.2
272,227 - MPMX19_03980 0.48 -1.2
272,227 - MPMX19_03980 0.48 +0.2
272,227 - MPMX19_03980 0.48 -0.3
272,227 - MPMX19_03980 0.48 -1.6
272,634 + MPMX19_03980 0.71 +0.2
272,634 + MPMX19_03980 0.71 +0.8
272,634 + MPMX19_03980 0.71 +0.3
272,634 + MPMX19_03980 0.71 -1.3
272,634 + MPMX19_03980 0.71 -0.3
272,634 + MPMX19_03980 0.71 +0.2
272,634 + MPMX19_03980 0.71 -0.3
272,634 + MPMX19_03980 0.71 +0.2
272,634 + MPMX19_03980 0.71 -0.2
272,634 + MPMX19_03980 0.71 -0.4
272,634 + MPMX19_03980 0.71 -0.7
272,634 + MPMX19_03980 0.71 -0.3
272,635 - MPMX19_03980 0.71 +0.2
272,635 - MPMX19_03980 0.71 -1.5
272,635 - MPMX19_03980 0.71 +0.3
272,635 - MPMX19_03980 0.71 -1.3
272,635 - MPMX19_03980 0.71 -0.3
272,635 - MPMX19_03980 0.71 -0.3
272,635 - MPMX19_03980 0.71 +0.1
272,635 - MPMX19_03980 0.71 -0.3
272,635 - MPMX19_03980 0.71 +0.8
272,635 - MPMX19_03980 0.71 +0.5
272,635 - MPMX19_03980 0.71 +0.8
272,635 - MPMX19_03980 0.71 -0.1
272,637 - MPMX19_03980 0.71 +0.1
272,637 - MPMX19_03980 0.71 -0.9
272,637 - MPMX19_03980 0.71 -1.1
272,790 + MPMX19_03980 0.80 -1.2
272,790 + MPMX19_03980 0.80 -0.7
272,790 + MPMX19_03980 0.80 +0.2
272,791 - MPMX19_03980 0.80 +1.1
272,791 - MPMX19_03980 0.80 +0.4
272,791 - MPMX19_03980 0.80 -1.1
273,539 + -0.2
273,540 - +0.8
273,540 - +0.1
273,540 - -0.7
273,559 + -0.5
273,559 + -1.5
273,559 + +0.2
273,559 + -0.4
273,559 + -0.6
273,559 + -0.7
273,559 + -1.4
273,560 - -1.7
273,560 - -1.4
273,560 - -2.1
273,560 - +1.0
273,560 - +0.3
273,560 - -0.9
273,560 - -0.6
273,560 - +0.8
273,560 - -0.4
273,560 - -0.2
273,647 + -0.9
273,647 + +0.6
273,856 - -0.5
273,856 - -0.8
273,898 + -0.1
273,898 + +0.1
273,898 + +0.2
273,899 - -0.8
273,974 + -1.2
273,974 + -1.3
273,974 + +0.4
273,974 + +0.3
273,974 + +0.2
273,975 - -0.3
273,995 + +1.1
273,995 + +0.3
273,995 + -1.7
273,995 + +0.3
274,027 + -1.7
274,027 + -1.7
274,027 + +1.6
274,027 + -0.7
274,027 + -1.0
274,028 - +0.4
274,028 - -0.8
274,028 - -0.8
274,028 - -1.7
274,028 - +0.4
274,028 - -0.3
274,082 + -0.1
274,082 + -2.0
274,082 + +0.4
274,082 + +0.3
274,083 - -0.3
274,083 - -0.7
274,083 - +0.2
274,083 - -1.1

Or see this region's nucleotide sequence