Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03302

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03300 and MPMX19_03301 overlap by 4 nucleotidesMPMX19_03301 and MPMX19_03302 overlap by 4 nucleotidesMPMX19_03302 and MPMX19_03303 are separated by 25 nucleotides MPMX19_03300: MPMX19_03300 - Erythritol/L-threitol-binding protein, at 646,703 to 648,055 _03300 MPMX19_03301: MPMX19_03301 - Melibiose/raffinose/stachyose import permease protein MelD, at 648,052 to 648,984 _03301 MPMX19_03302: MPMX19_03302 - Trehalose transport system permease protein SugB, at 648,981 to 649,811 _03302 MPMX19_03303: MPMX19_03303 - sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 649,837 to 650,919 _03303 Position (kb) 648 649 650Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 648.127 kb on + strandat 648.127 kb on + strandat 648.128 kb on - strandat 648.128 kb on - strandat 648.259 kb on + strand, within MPMX19_03301at 648.259 kb on + strand, within MPMX19_03301at 648.259 kb on + strand, within MPMX19_03301at 648.259 kb on + strand, within MPMX19_03301at 648.259 kb on + strand, within MPMX19_03301at 648.259 kb on + strand, within MPMX19_03301at 648.259 kb on + strand, within MPMX19_03301at 648.259 kb on + strand, within MPMX19_03301at 648.260 kb on - strand, within MPMX19_03301at 648.260 kb on - strand, within MPMX19_03301at 648.260 kb on - strand, within MPMX19_03301at 648.260 kb on - strand, within MPMX19_03301at 648.260 kb on - strand, within MPMX19_03301at 648.260 kb on - strand, within MPMX19_03301at 648.260 kb on - strand, within MPMX19_03301at 648.316 kb on + strand, within MPMX19_03301at 648.317 kb on - strand, within MPMX19_03301at 648.317 kb on - strand, within MPMX19_03301at 648.317 kb on - strand, within MPMX19_03301at 648.499 kb on + strand, within MPMX19_03301at 648.499 kb on + strand, within MPMX19_03301at 648.500 kb on - strand, within MPMX19_03301at 648.500 kb on - strand, within MPMX19_03301at 648.500 kb on - strand, within MPMX19_03301at 648.500 kb on - strand, within MPMX19_03301at 648.541 kb on + strand, within MPMX19_03301at 648.541 kb on + strand, within MPMX19_03301at 648.541 kb on + strand, within MPMX19_03301at 648.541 kb on + strand, within MPMX19_03301at 648.541 kb on + strand, within MPMX19_03301at 648.541 kb on + strand, within MPMX19_03301at 648.541 kb on + strand, within MPMX19_03301at 648.541 kb on + strand, within MPMX19_03301at 648.541 kb on + strand, within MPMX19_03301at 648.541 kb on + strand, within MPMX19_03301at 648.541 kb on + strand, within MPMX19_03301at 648.541 kb on + strand, within MPMX19_03301at 648.541 kb on + strand, within MPMX19_03301at 648.542 kb on - strand, within MPMX19_03301at 648.542 kb on - strand, within MPMX19_03301at 648.542 kb on - strand, within MPMX19_03301at 648.542 kb on - strand, within MPMX19_03301at 648.542 kb on - strand, within MPMX19_03301at 648.542 kb on - strand, within MPMX19_03301at 648.542 kb on - strand, within MPMX19_03301at 648.542 kb on - strand, within MPMX19_03301at 648.542 kb on - strand, within MPMX19_03301at 648.542 kb on - strand, within MPMX19_03301at 648.652 kb on + strand, within MPMX19_03301at 648.653 kb on - strand, within MPMX19_03301at 648.653 kb on - strand, within MPMX19_03301at 648.731 kb on + strand, within MPMX19_03301at 648.731 kb on + strand, within MPMX19_03301at 648.731 kb on + strand, within MPMX19_03301at 648.731 kb on + strand, within MPMX19_03301at 648.732 kb on - strand, within MPMX19_03301at 648.732 kb on - strand, within MPMX19_03301at 648.732 kb on - strand, within MPMX19_03301at 648.787 kb on + strand, within MPMX19_03301at 648.788 kb on - strand, within MPMX19_03301at 648.788 kb on - strand, within MPMX19_03301at 648.788 kb on - strand, within MPMX19_03301at 648.788 kb on - strand, within MPMX19_03301at 648.788 kb on - strand, within MPMX19_03301at 648.838 kb on + strand, within MPMX19_03301at 648.838 kb on + strand, within MPMX19_03301at 648.838 kb on + strand, within MPMX19_03301at 648.838 kb on + strand, within MPMX19_03301at 648.839 kb on - strand, within MPMX19_03301at 648.839 kb on - strand, within MPMX19_03301at 648.839 kb on - strand, within MPMX19_03301at 648.839 kb on - strand, within MPMX19_03301at 648.839 kb on - strand, within MPMX19_03301at 648.839 kb on - strand, within MPMX19_03301at 648.844 kb on + strand, within MPMX19_03301at 648.844 kb on + strand, within MPMX19_03301at 648.844 kb on + strand, within MPMX19_03301at 648.844 kb on + strand, within MPMX19_03301at 648.844 kb on + strand, within MPMX19_03301at 648.845 kb on - strand, within MPMX19_03301at 648.845 kb on - strand, within MPMX19_03301at 648.862 kb on + strand, within MPMX19_03301at 648.862 kb on + strand, within MPMX19_03301at 648.863 kb on - strand, within MPMX19_03301at 648.863 kb on - strand, within MPMX19_03301at 648.863 kb on - strand, within MPMX19_03301at 648.863 kb on - strand, within MPMX19_03301at 648.863 kb on - strand, within MPMX19_03301at 648.863 kb on - strand, within MPMX19_03301at 648.863 kb on - strand, within MPMX19_03301at 648.863 kb on - strand, within MPMX19_03301at 648.865 kb on + strand, within MPMX19_03301at 648.865 kb on + strand, within MPMX19_03301at 648.865 kb on + strand, within MPMX19_03301at 648.865 kb on + strand, within MPMX19_03301at 648.865 kb on + strand, within MPMX19_03301at 648.865 kb on + strand, within MPMX19_03301at 648.865 kb on + strand, within MPMX19_03301at 648.865 kb on + strand, within MPMX19_03301at 648.865 kb on + strand, within MPMX19_03301at 648.865 kb on + strand, within MPMX19_03301at 648.866 kb on - strand, within MPMX19_03301at 648.866 kb on - strand, within MPMX19_03301at 648.866 kb on - strand, within MPMX19_03301at 648.866 kb on - strand, within MPMX19_03301at 648.877 kb on + strand, within MPMX19_03301at 648.940 kb on + strandat 648.940 kb on + strandat 648.941 kb on - strandat 648.967 kb on - strandat 649.158 kb on + strand, within MPMX19_03302at 649.158 kb on + strand, within MPMX19_03302at 649.158 kb on + strand, within MPMX19_03302at 649.158 kb on + strand, within MPMX19_03302at 649.159 kb on - strand, within MPMX19_03302at 649.159 kb on - strand, within MPMX19_03302at 649.159 kb on - strand, within MPMX19_03302at 649.160 kb on + strand, within MPMX19_03302at 649.160 kb on + strand, within MPMX19_03302at 649.194 kb on + strand, within MPMX19_03302at 649.194 kb on + strand, within MPMX19_03302at 649.195 kb on - strand, within MPMX19_03302at 649.458 kb on + strand, within MPMX19_03302at 649.459 kb on - strand, within MPMX19_03302at 649.604 kb on + strand, within MPMX19_03302at 649.604 kb on + strand, within MPMX19_03302at 649.604 kb on + strand, within MPMX19_03302at 649.605 kb on - strand, within MPMX19_03302at 649.605 kb on - strand, within MPMX19_03302at 649.665 kb on + strand, within MPMX19_03302at 649.665 kb on + strand, within MPMX19_03302at 649.665 kb on + strand, within MPMX19_03302at 649.665 kb on + strand, within MPMX19_03302at 649.666 kb on - strand, within MPMX19_03302at 649.666 kb on - strand, within MPMX19_03302at 649.666 kb on - strand, within MPMX19_03302at 649.666 kb on - strand, within MPMX19_03302at 649.902 kb on - strandat 649.902 kb on - strandat 650.086 kb on + strand, within MPMX19_03303at 650.086 kb on + strand, within MPMX19_03303at 650.087 kb on - strand, within MPMX19_03303at 650.087 kb on - strand, within MPMX19_03303at 650.087 kb on - strand, within MPMX19_03303at 650.401 kb on + strand, within MPMX19_03303at 650.401 kb on + strand, within MPMX19_03303at 650.401 kb on + strand, within MPMX19_03303at 650.401 kb on + strand, within MPMX19_03303at 650.402 kb on - strand, within MPMX19_03303at 650.402 kb on - strand, within MPMX19_03303at 650.402 kb on - strand, within MPMX19_03303at 650.402 kb on - strand, within MPMX19_03303at 650.402 kb on - strand, within MPMX19_03303at 650.402 kb on - strand, within MPMX19_03303at 650.589 kb on + strand, within MPMX19_03303at 650.662 kb on + strand, within MPMX19_03303at 650.662 kb on + strand, within MPMX19_03303at 650.662 kb on + strand, within MPMX19_03303at 650.662 kb on + strand, within MPMX19_03303at 650.662 kb on + strand, within MPMX19_03303at 650.663 kb on - strand, within MPMX19_03303at 650.663 kb on - strand, within MPMX19_03303at 650.663 kb on - strand, within MPMX19_03303at 650.663 kb on - strand, within MPMX19_03303at 650.663 kb on - strand, within MPMX19_03303

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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648,127 + -0.6
648,127 + +0.2
648,128 - -1.1
648,128 - -0.2
648,259 + MPMX19_03301 0.22 -2.1
648,259 + MPMX19_03301 0.22 +1.2
648,259 + MPMX19_03301 0.22 -2.3
648,259 + MPMX19_03301 0.22 +0.2
648,259 + MPMX19_03301 0.22 -0.1
648,259 + MPMX19_03301 0.22 -0.6
648,259 + MPMX19_03301 0.22 -1.0
648,259 + MPMX19_03301 0.22 -0.6
648,260 - MPMX19_03301 0.22 -1.1
648,260 - MPMX19_03301 0.22 +0.7
648,260 - MPMX19_03301 0.22 -2.6
648,260 - MPMX19_03301 0.22 +0.2
648,260 - MPMX19_03301 0.22 -0.1
648,260 - MPMX19_03301 0.22 -0.3
648,260 - MPMX19_03301 0.22 -0.6
648,316 + MPMX19_03301 0.28 -0.8
648,317 - MPMX19_03301 0.28 -0.9
648,317 - MPMX19_03301 0.28 -0.2
648,317 - MPMX19_03301 0.28 -1.1
648,499 + MPMX19_03301 0.48 -1.1
648,499 + MPMX19_03301 0.48 +0.4
648,500 - MPMX19_03301 0.48 +0.4
648,500 - MPMX19_03301 0.48 +0.1
648,500 - MPMX19_03301 0.48 +0.5
648,500 - MPMX19_03301 0.48 -1.8
648,541 + MPMX19_03301 0.52 -0.2
648,541 + MPMX19_03301 0.52 +0.0
648,541 + MPMX19_03301 0.52 -1.1
648,541 + MPMX19_03301 0.52 +0.8
648,541 + MPMX19_03301 0.52 -1.3
648,541 + MPMX19_03301 0.52 -0.5
648,541 + MPMX19_03301 0.52 +1.1
648,541 + MPMX19_03301 0.52 +1.0
648,541 + MPMX19_03301 0.52 -0.3
648,541 + MPMX19_03301 0.52 -0.5
648,541 + MPMX19_03301 0.52 -1.8
648,541 + MPMX19_03301 0.52 -1.2
648,541 + MPMX19_03301 0.52 +1.7
648,542 - MPMX19_03301 0.53 -1.3
648,542 - MPMX19_03301 0.53 +0.7
648,542 - MPMX19_03301 0.53 -0.5
648,542 - MPMX19_03301 0.53 -0.4
648,542 - MPMX19_03301 0.53 -3.2
648,542 - MPMX19_03301 0.53 -1.4
648,542 - MPMX19_03301 0.53 -1.5
648,542 - MPMX19_03301 0.53 +0.9
648,542 - MPMX19_03301 0.53 -0.1
648,542 - MPMX19_03301 0.53 -0.2
648,652 + MPMX19_03301 0.64 -0.6
648,653 - MPMX19_03301 0.64 +1.1
648,653 - MPMX19_03301 0.64 -0.6
648,731 + MPMX19_03301 0.73 -0.5
648,731 + MPMX19_03301 0.73 +0.1
648,731 + MPMX19_03301 0.73 -1.1
648,731 + MPMX19_03301 0.73 +0.4
648,732 - MPMX19_03301 0.73 -0.2
648,732 - MPMX19_03301 0.73 +1.3
648,732 - MPMX19_03301 0.73 -0.5
648,787 + MPMX19_03301 0.79 +0.0
648,788 - MPMX19_03301 0.79 +0.1
648,788 - MPMX19_03301 0.79 -1.9
648,788 - MPMX19_03301 0.79 -0.6
648,788 - MPMX19_03301 0.79 -1.2
648,788 - MPMX19_03301 0.79 +0.1
648,838 + MPMX19_03301 0.84 -1.4
648,838 + MPMX19_03301 0.84 +0.2
648,838 + MPMX19_03301 0.84 -0.1
648,838 + MPMX19_03301 0.84 -0.4
648,839 - MPMX19_03301 0.84 +0.8
648,839 - MPMX19_03301 0.84 -1.3
648,839 - MPMX19_03301 0.84 -0.8
648,839 - MPMX19_03301 0.84 -0.8
648,839 - MPMX19_03301 0.84 -0.6
648,839 - MPMX19_03301 0.84 -0.4
648,844 + MPMX19_03301 0.85 +0.1
648,844 + MPMX19_03301 0.85 -1.1
648,844 + MPMX19_03301 0.85 -1.5
648,844 + MPMX19_03301 0.85 -1.9
648,844 + MPMX19_03301 0.85 -0.3
648,845 - MPMX19_03301 0.85 -0.2
648,845 - MPMX19_03301 0.85 -0.2
648,862 + MPMX19_03301 0.87 -0.9
648,862 + MPMX19_03301 0.87 -1.3
648,863 - MPMX19_03301 0.87 +0.5
648,863 - MPMX19_03301 0.87 -1.2
648,863 - MPMX19_03301 0.87 +0.0
648,863 - MPMX19_03301 0.87 -1.2
648,863 - MPMX19_03301 0.87 +0.5
648,863 - MPMX19_03301 0.87 -1.6
648,863 - MPMX19_03301 0.87 -0.4
648,863 - MPMX19_03301 0.87 -0.0
648,865 + MPMX19_03301 0.87 +0.4
648,865 + MPMX19_03301 0.87 -0.5
648,865 + MPMX19_03301 0.87 -0.5
648,865 + MPMX19_03301 0.87 +1.1
648,865 + MPMX19_03301 0.87 +0.5
648,865 + MPMX19_03301 0.87 +1.3
648,865 + MPMX19_03301 0.87 +0.4
648,865 + MPMX19_03301 0.87 -0.3
648,865 + MPMX19_03301 0.87 +0.4
648,865 + MPMX19_03301 0.87 -0.1
648,866 - MPMX19_03301 0.87 +0.1
648,866 - MPMX19_03301 0.87 +1.0
648,866 - MPMX19_03301 0.87 -1.6
648,866 - MPMX19_03301 0.87 +1.0
648,877 + MPMX19_03301 0.88 +0.9
648,940 + +0.1
648,940 + +0.1
648,941 - -0.6
648,967 - +0.9
649,158 + MPMX19_03302 0.21 +0.4
649,158 + MPMX19_03302 0.21 -0.6
649,158 + MPMX19_03302 0.21 +0.7
649,158 + MPMX19_03302 0.21 +2.3
649,159 - MPMX19_03302 0.21 -0.6
649,159 - MPMX19_03302 0.21 +0.4
649,159 - MPMX19_03302 0.21 -0.7
649,160 + MPMX19_03302 0.22 +0.5
649,160 + MPMX19_03302 0.22 -0.7
649,194 + MPMX19_03302 0.26 -1.8
649,194 + MPMX19_03302 0.26 -0.2
649,195 - MPMX19_03302 0.26 +1.1
649,458 + MPMX19_03302 0.57 -2.8
649,459 - MPMX19_03302 0.58 -0.8
649,604 + MPMX19_03302 0.75 +0.3
649,604 + MPMX19_03302 0.75 +0.4
649,604 + MPMX19_03302 0.75 -0.3
649,605 - MPMX19_03302 0.75 -1.1
649,605 - MPMX19_03302 0.75 +0.3
649,665 + MPMX19_03302 0.82 +0.2
649,665 + MPMX19_03302 0.82 -0.8
649,665 + MPMX19_03302 0.82 +0.7
649,665 + MPMX19_03302 0.82 +0.4
649,666 - MPMX19_03302 0.82 -0.2
649,666 - MPMX19_03302 0.82 -0.2
649,666 - MPMX19_03302 0.82 +0.1
649,666 - MPMX19_03302 0.82 -0.4
649,902 - +0.2
649,902 - -1.4
650,086 + MPMX19_03303 0.23 -0.0
650,086 + MPMX19_03303 0.23 +0.5
650,087 - MPMX19_03303 0.23 +0.2
650,087 - MPMX19_03303 0.23 +0.3
650,087 - MPMX19_03303 0.23 +0.4
650,401 + MPMX19_03303 0.52 -0.1
650,401 + MPMX19_03303 0.52 -1.6
650,401 + MPMX19_03303 0.52 -0.3
650,401 + MPMX19_03303 0.52 -0.1
650,402 - MPMX19_03303 0.52 +0.1
650,402 - MPMX19_03303 0.52 +0.6
650,402 - MPMX19_03303 0.52 -0.5
650,402 - MPMX19_03303 0.52 -2.0
650,402 - MPMX19_03303 0.52 -0.2
650,402 - MPMX19_03303 0.52 +0.6
650,589 + MPMX19_03303 0.69 +1.2
650,662 + MPMX19_03303 0.76 -1.1
650,662 + MPMX19_03303 0.76 -0.9
650,662 + MPMX19_03303 0.76 +0.1
650,662 + MPMX19_03303 0.76 -1.9
650,662 + MPMX19_03303 0.76 -1.9
650,663 - MPMX19_03303 0.76 -0.6
650,663 - MPMX19_03303 0.76 +0.1
650,663 - MPMX19_03303 0.76 +0.4
650,663 - MPMX19_03303 0.76 +0.5
650,663 - MPMX19_03303 0.76 -0.4

Or see this region's nucleotide sequence