Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03295

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03294 and MPMX19_03295 are separated by 86 nucleotidesMPMX19_03295 and MPMX19_03296 are separated by 142 nucleotides MPMX19_03294: MPMX19_03294 - Homoserine kinase, at 641,175 to 642,212 _03294 MPMX19_03295: MPMX19_03295 - HTH-type transcriptional regulator McbR, at 642,299 to 643,006 _03295 MPMX19_03296: MPMX19_03296 - L-carnitine dehydrogenase, at 643,149 to 644,093 _03296 Position (kb) 642 643 644Strain fitness (log2 ratio) -2 -1 0 1at 641.407 kb on + strand, within MPMX19_03294at 641.408 kb on - strand, within MPMX19_03294at 641.408 kb on - strand, within MPMX19_03294at 641.464 kb on + strand, within MPMX19_03294at 641.465 kb on - strand, within MPMX19_03294at 641.465 kb on - strand, within MPMX19_03294at 641.465 kb on - strand, within MPMX19_03294at 641.692 kb on + strand, within MPMX19_03294at 641.692 kb on + strand, within MPMX19_03294at 641.692 kb on + strand, within MPMX19_03294at 641.692 kb on + strand, within MPMX19_03294at 641.692 kb on + strand, within MPMX19_03294at 641.693 kb on - strand, within MPMX19_03294at 641.693 kb on - strand, within MPMX19_03294at 641.693 kb on - strand, within MPMX19_03294at 641.693 kb on - strand, within MPMX19_03294at 641.693 kb on - strand, within MPMX19_03294at 641.693 kb on - strand, within MPMX19_03294at 641.693 kb on - strand, within MPMX19_03294at 641.693 kb on - strand, within MPMX19_03294at 641.693 kb on - strand, within MPMX19_03294at 641.693 kb on - strand, within MPMX19_03294at 641.767 kb on + strand, within MPMX19_03294at 641.768 kb on - strand, within MPMX19_03294at 641.768 kb on - strand, within MPMX19_03294at 641.866 kb on + strand, within MPMX19_03294at 641.867 kb on - strand, within MPMX19_03294at 641.867 kb on - strand, within MPMX19_03294at 641.867 kb on - strand, within MPMX19_03294at 641.867 kb on - strand, within MPMX19_03294at 642.052 kb on + strand, within MPMX19_03294at 642.052 kb on + strand, within MPMX19_03294at 642.052 kb on + strand, within MPMX19_03294at 642.052 kb on + strand, within MPMX19_03294at 642.053 kb on - strand, within MPMX19_03294at 642.053 kb on - strand, within MPMX19_03294at 642.053 kb on - strand, within MPMX19_03294at 642.053 kb on - strand, within MPMX19_03294at 642.053 kb on - strand, within MPMX19_03294at 642.053 kb on - strand, within MPMX19_03294at 642.053 kb on - strand, within MPMX19_03294at 642.195 kb on + strandat 642.195 kb on + strandat 642.195 kb on + strandat 642.195 kb on + strandat 642.195 kb on + strandat 642.195 kb on + strandat 642.195 kb on + strandat 642.195 kb on + strandat 642.196 kb on - strandat 642.196 kb on - strandat 642.196 kb on - strandat 642.196 kb on - strandat 642.196 kb on - strandat 642.196 kb on - strandat 642.196 kb on - strandat 642.196 kb on - strandat 642.196 kb on - strandat 642.196 kb on - strandat 642.242 kb on + strandat 642.457 kb on - strand, within MPMX19_03295at 642.493 kb on - strand, within MPMX19_03295at 642.493 kb on - strand, within MPMX19_03295at 642.599 kb on - strand, within MPMX19_03295at 642.757 kb on - strand, within MPMX19_03295at 642.757 kb on - strand, within MPMX19_03295at 642.951 kb on + strandat 642.952 kb on - strandat 643.452 kb on + strand, within MPMX19_03296at 643.452 kb on + strand, within MPMX19_03296at 643.452 kb on + strand, within MPMX19_03296at 643.452 kb on + strand, within MPMX19_03296at 643.452 kb on - strand, within MPMX19_03296at 643.453 kb on - strand, within MPMX19_03296at 643.453 kb on - strand, within MPMX19_03296at 643.611 kb on + strand, within MPMX19_03296at 643.612 kb on - strand, within MPMX19_03296at 643.612 kb on - strand, within MPMX19_03296at 643.612 kb on - strand, within MPMX19_03296at 643.653 kb on + strand, within MPMX19_03296at 643.653 kb on + strand, within MPMX19_03296at 643.653 kb on + strand, within MPMX19_03296at 643.654 kb on - strand, within MPMX19_03296at 643.654 kb on - strand, within MPMX19_03296at 643.654 kb on - strand, within MPMX19_03296at 643.848 kb on + strand, within MPMX19_03296at 643.848 kb on + strand, within MPMX19_03296at 643.848 kb on + strand, within MPMX19_03296at 643.849 kb on - strand, within MPMX19_03296at 643.849 kb on - strand, within MPMX19_03296at 643.849 kb on - strand, within MPMX19_03296at 643.849 kb on - strand, within MPMX19_03296at 643.849 kb on - strand, within MPMX19_03296at 643.884 kb on + strand, within MPMX19_03296at 643.884 kb on + strand, within MPMX19_03296at 643.884 kb on + strand, within MPMX19_03296at 643.884 kb on + strand, within MPMX19_03296at 643.885 kb on - strand, within MPMX19_03296

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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641,407 + MPMX19_03294 0.22 -2.7
641,408 - MPMX19_03294 0.22 +1.1
641,408 - MPMX19_03294 0.22 +0.5
641,464 + MPMX19_03294 0.28 -1.9
641,465 - MPMX19_03294 0.28 +0.3
641,465 - MPMX19_03294 0.28 -0.1
641,465 - MPMX19_03294 0.28 -1.2
641,692 + MPMX19_03294 0.50 +0.5
641,692 + MPMX19_03294 0.50 -0.2
641,692 + MPMX19_03294 0.50 +0.8
641,692 + MPMX19_03294 0.50 -1.2
641,692 + MPMX19_03294 0.50 -0.3
641,693 - MPMX19_03294 0.50 -1.6
641,693 - MPMX19_03294 0.50 -0.7
641,693 - MPMX19_03294 0.50 -1.3
641,693 - MPMX19_03294 0.50 -0.3
641,693 - MPMX19_03294 0.50 -1.8
641,693 - MPMX19_03294 0.50 -0.3
641,693 - MPMX19_03294 0.50 +0.5
641,693 - MPMX19_03294 0.50 -0.3
641,693 - MPMX19_03294 0.50 +0.9
641,693 - MPMX19_03294 0.50 -0.5
641,767 + MPMX19_03294 0.57 -0.1
641,768 - MPMX19_03294 0.57 +0.6
641,768 - MPMX19_03294 0.57 -0.4
641,866 + MPMX19_03294 0.67 -1.0
641,867 - MPMX19_03294 0.67 -0.5
641,867 - MPMX19_03294 0.67 -1.5
641,867 - MPMX19_03294 0.67 +0.4
641,867 - MPMX19_03294 0.67 -1.0
642,052 + MPMX19_03294 0.84 +0.0
642,052 + MPMX19_03294 0.84 -1.0
642,052 + MPMX19_03294 0.84 +1.2
642,052 + MPMX19_03294 0.84 -0.6
642,053 - MPMX19_03294 0.85 -0.5
642,053 - MPMX19_03294 0.85 -0.8
642,053 - MPMX19_03294 0.85 -1.0
642,053 - MPMX19_03294 0.85 -1.6
642,053 - MPMX19_03294 0.85 -0.3
642,053 - MPMX19_03294 0.85 +1.1
642,053 - MPMX19_03294 0.85 -0.3
642,195 + +0.5
642,195 + +0.7
642,195 + -1.2
642,195 + -0.4
642,195 + +0.4
642,195 + -1.6
642,195 + -1.7
642,195 + +0.3
642,196 - +1.7
642,196 - +0.8
642,196 - -1.1
642,196 - -0.5
642,196 - +1.1
642,196 - -0.8
642,196 - +0.4
642,196 - +0.7
642,196 - -1.6
642,196 - +1.1
642,242 + -0.2
642,457 - MPMX19_03295 0.22 -0.3
642,493 - MPMX19_03295 0.27 -0.2
642,493 - MPMX19_03295 0.27 -1.3
642,599 - MPMX19_03295 0.42 +0.2
642,757 - MPMX19_03295 0.65 -1.1
642,757 - MPMX19_03295 0.65 +0.3
642,951 + -2.5
642,952 - -1.3
643,452 + MPMX19_03296 0.32 -1.3
643,452 + MPMX19_03296 0.32 -1.5
643,452 + MPMX19_03296 0.32 -0.2
643,452 + MPMX19_03296 0.32 -1.0
643,452 - MPMX19_03296 0.32 -2.2
643,453 - MPMX19_03296 0.32 -0.5
643,453 - MPMX19_03296 0.32 -0.2
643,611 + MPMX19_03296 0.49 -1.5
643,612 - MPMX19_03296 0.49 +1.3
643,612 - MPMX19_03296 0.49 +0.4
643,612 - MPMX19_03296 0.49 -0.3
643,653 + MPMX19_03296 0.53 +0.5
643,653 + MPMX19_03296 0.53 -0.6
643,653 + MPMX19_03296 0.53 -0.1
643,654 - MPMX19_03296 0.53 -0.7
643,654 - MPMX19_03296 0.53 -1.1
643,654 - MPMX19_03296 0.53 -2.0
643,848 + MPMX19_03296 0.74 -0.0
643,848 + MPMX19_03296 0.74 -0.9
643,848 + MPMX19_03296 0.74 +0.3
643,849 - MPMX19_03296 0.74 -1.8
643,849 - MPMX19_03296 0.74 -0.3
643,849 - MPMX19_03296 0.74 -0.0
643,849 - MPMX19_03296 0.74 -1.3
643,849 - MPMX19_03296 0.74 -1.6
643,884 + MPMX19_03296 0.78 +0.2
643,884 + MPMX19_03296 0.78 -1.0
643,884 + MPMX19_03296 0.78 -1.0
643,884 + MPMX19_03296 0.78 -2.0
643,885 - MPMX19_03296 0.78 +0.1

Or see this region's nucleotide sequence