Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03044 and MPMX19_03045 are separated by 275 nucleotides MPMX19_03045 and MPMX19_03046 are separated by 35 nucleotides MPMX19_03046 and MPMX19_03047 are separated by 173 nucleotides MPMX19_03047 and MPMX19_03048 are separated by 545 nucleotides
MPMX19_03044: MPMX19_03044 - hypothetical protein, at 309,980 to 310,693
_03044
MPMX19_03045: MPMX19_03045 - hypothetical protein, at 310,969 to 311,631
_03045
MPMX19_03046: MPMX19_03046 - hypothetical protein, at 311,667 to 311,819
_03046
MPMX19_03047: MPMX19_03047 - hypothetical protein, at 311,993 to 312,133
_03047
MPMX19_03048: MPMX19_03048 - hypothetical protein, at 312,679 to 313,398
_03048
Position (kb) 311
312 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 310.733 kb on + strand at 310.736 kb on - strand at 310.760 kb on + strand at 310.760 kb on + strand at 310.761 kb on - strand at 310.761 kb on - strand at 310.761 kb on - strand at 310.761 kb on - strand at 310.856 kb on - strand at 310.897 kb on - strand at 311.000 kb on + strand at 311.000 kb on + strand at 311.001 kb on - strand at 311.002 kb on + strand at 311.002 kb on + strand at 311.002 kb on + strand at 311.002 kb on + strand at 311.002 kb on + strand at 311.002 kb on + strand at 311.002 kb on + strand at 311.002 kb on + strand at 311.002 kb on + strand at 311.002 kb on + strand at 311.003 kb on - strand at 311.101 kb on + strand, within MPMX19_03045 at 311.102 kb on - strand, within MPMX19_03045 at 311.102 kb on - strand, within MPMX19_03045 at 311.102 kb on - strand, within MPMX19_03045 at 311.273 kb on + strand, within MPMX19_03045 at 311.377 kb on - strand, within MPMX19_03045 at 311.401 kb on + strand, within MPMX19_03045 at 311.401 kb on + strand, within MPMX19_03045 at 311.401 kb on + strand, within MPMX19_03045 at 311.401 kb on + strand, within MPMX19_03045 at 311.401 kb on + strand, within MPMX19_03045 at 311.401 kb on + strand, within MPMX19_03045 at 311.401 kb on + strand, within MPMX19_03045 at 311.402 kb on - strand, within MPMX19_03045 at 311.402 kb on - strand, within MPMX19_03045 at 311.402 kb on - strand, within MPMX19_03045 at 311.402 kb on - strand, within MPMX19_03045 at 311.542 kb on + strand, within MPMX19_03045 at 311.542 kb on + strand, within MPMX19_03045 at 311.542 kb on + strand, within MPMX19_03045 at 311.542 kb on + strand, within MPMX19_03045 at 311.542 kb on + strand, within MPMX19_03045 at 311.543 kb on - strand, within MPMX19_03045 at 311.543 kb on - strand, within MPMX19_03045 at 311.543 kb on - strand, within MPMX19_03045 at 311.543 kb on - strand, within MPMX19_03045 at 311.543 kb on - strand, within MPMX19_03045 at 311.593 kb on - strand at 311.594 kb on + strand at 311.594 kb on + strand at 311.594 kb on + strand at 311.594 kb on + strand at 311.594 kb on + strand at 311.594 kb on + strand at 311.594 kb on + strand at 311.595 kb on - strand at 311.629 kb on + strand at 311.630 kb on - strand at 311.630 kb on - strand at 311.994 kb on + strand at 311.994 kb on + strand at 311.995 kb on - strand at 311.995 kb on - strand at 312.129 kb on + strand at 312.129 kb on + strand at 312.129 kb on + strand at 312.130 kb on - strand at 312.151 kb on + strand at 312.152 kb on - strand at 312.292 kb on - strand at 312.301 kb on + strand at 312.301 kb on + strand at 312.301 kb on + strand at 312.302 kb on - strand at 312.331 kb on + strand at 312.331 kb on + strand at 312.331 kb on + strand at 312.332 kb on - strand at 312.332 kb on - strand at 312.332 kb on - strand at 312.332 kb on - strand at 312.332 kb on - strand at 312.362 kb on - strand at 312.533 kb on + strand at 312.534 kb on - strand at 312.534 kb on - strand at 312.534 kb on - strand at 312.534 kb on - strand at 312.534 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 310,733 + -0.4 310,736 - +0.3 310,760 + -1.2 310,760 + +0.4 310,761 - -1.4 310,761 - -0.8 310,761 - +0.4 310,761 - +0.9 310,856 - -1.7 310,897 - -0.9 311,000 + +0.0 311,000 + -1.0 311,001 - -1.7 311,002 + -1.0 311,002 + +0.8 311,002 + +0.5 311,002 + -0.0 311,002 + +2.3 311,002 + -0.6 311,002 + +0.0 311,002 + -0.6 311,002 + +0.8 311,002 + +1.2 311,003 - +0.1 311,101 + MPMX19_03045 0.20 -2.1 311,102 - MPMX19_03045 0.20 -0.3 311,102 - MPMX19_03045 0.20 +1.2 311,102 - MPMX19_03045 0.20 -0.7 311,273 + MPMX19_03045 0.46 -0.7 311,377 - MPMX19_03045 0.62 -1.2 311,401 + MPMX19_03045 0.65 -0.2 311,401 + MPMX19_03045 0.65 -1.4 311,401 + MPMX19_03045 0.65 +0.4 311,401 + MPMX19_03045 0.65 -0.8 311,401 + MPMX19_03045 0.65 +0.0 311,401 + MPMX19_03045 0.65 -0.0 311,401 + MPMX19_03045 0.65 -0.6 311,402 - MPMX19_03045 0.65 +1.3 311,402 - MPMX19_03045 0.65 -1.6 311,402 - MPMX19_03045 0.65 -0.9 311,402 - MPMX19_03045 0.65 +1.2 311,542 + MPMX19_03045 0.86 -1.7 311,542 + MPMX19_03045 0.86 +1.1 311,542 + MPMX19_03045 0.86 +0.3 311,542 + MPMX19_03045 0.86 -1.0 311,542 + MPMX19_03045 0.86 -0.0 311,543 - MPMX19_03045 0.87 +0.1 311,543 - MPMX19_03045 0.87 -1.8 311,543 - MPMX19_03045 0.87 -0.6 311,543 - MPMX19_03045 0.87 -0.7 311,543 - MPMX19_03045 0.87 -0.7 311,593 - -0.5 311,594 + -0.8 311,594 + -0.4 311,594 + -0.0 311,594 + +0.3 311,594 + -2.9 311,594 + -1.7 311,594 + -0.5 311,595 - +0.1 311,629 + +0.1 311,630 - +0.4 311,630 - -1.5 311,994 + -1.1 311,994 + -0.3 311,995 - -1.0 311,995 - -0.3 312,129 + +0.2 312,129 + -0.6 312,129 + -0.6 312,130 - +0.5 312,151 + -0.7 312,152 - -1.2 312,292 - +1.0 312,301 + +0.0 312,301 + +1.9 312,301 + -0.9 312,302 - -0.2 312,331 + -1.8 312,331 + +1.4 312,331 + -1.3 312,332 - -1.8 312,332 - +1.0 312,332 - -2.6 312,332 - +0.4 312,332 - +0.0 312,362 - -0.7 312,533 + +1.2 312,534 - -1.0 312,534 - +0.5 312,534 - -0.5 312,534 - +0.9 312,534 - +0.1
Or see this region's nucleotide sequence