Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02610 and MPMX19_02611 are separated by 656 nucleotides MPMX19_02611 and MPMX19_02612 are separated by 134 nucleotides MPMX19_02612 and MPMX19_02613 are separated by 151 nucleotides
MPMX19_02610: MPMX19_02610 - hypothetical protein, at 2,726,714 to 2,726,962
_02610
MPMX19_02611: MPMX19_02611 - hypothetical protein, at 2,727,619 to 2,728,209
_02611
MPMX19_02612: MPMX19_02612 - hypothetical protein, at 2,728,344 to 2,728,787
_02612
MPMX19_02613: MPMX19_02613 - hypothetical protein, at 2,728,939 to 2,729,178
_02613
Position (kb)
2727
2728
2729 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2726.852 kb on + strand, within MPMX19_02610 at 2726.853 kb on - strand, within MPMX19_02610 at 2726.960 kb on + strand at 2726.960 kb on + strand at 2726.960 kb on + strand at 2726.960 kb on + strand at 2726.960 kb on + strand at 2726.960 kb on + strand at 2726.960 kb on + strand at 2726.960 kb on + strand at 2726.960 kb on + strand at 2726.960 kb on + strand at 2726.960 kb on + strand at 2726.960 kb on + strand at 2726.960 kb on + strand at 2726.960 kb on + strand at 2726.960 kb on + strand at 2726.960 kb on + strand at 2726.960 kb on + strand at 2726.961 kb on - strand at 2726.961 kb on - strand at 2726.961 kb on - strand at 2726.961 kb on - strand at 2726.961 kb on - strand at 2726.961 kb on - strand at 2726.961 kb on - strand at 2726.961 kb on - strand at 2726.961 kb on - strand at 2726.961 kb on - strand at 2726.961 kb on - strand at 2726.961 kb on - strand at 2726.961 kb on - strand at 2726.961 kb on - strand at 2726.961 kb on - strand at 2726.961 kb on - strand at 2726.961 kb on - strand at 2726.961 kb on - strand at 2726.961 kb on - strand at 2726.961 kb on - strand at 2726.961 kb on - strand at 2726.961 kb on - strand at 2726.961 kb on - strand at 2726.986 kb on + strand at 2726.986 kb on + strand at 2726.986 kb on + strand at 2726.986 kb on + strand at 2726.986 kb on + strand at 2726.986 kb on + strand at 2726.986 kb on + strand at 2726.986 kb on + strand at 2726.986 kb on + strand at 2726.986 kb on + strand at 2726.986 kb on + strand at 2726.986 kb on + strand at 2726.986 kb on + strand at 2726.986 kb on + strand at 2726.986 kb on + strand at 2726.986 kb on + strand at 2726.986 kb on + strand at 2726.986 kb on + strand at 2726.986 kb on + strand at 2726.986 kb on + strand at 2726.986 kb on + strand at 2726.987 kb on - strand at 2726.987 kb on - strand at 2726.987 kb on - strand at 2726.987 kb on - strand at 2726.987 kb on - strand at 2726.987 kb on - strand at 2726.987 kb on - strand at 2726.987 kb on - strand at 2727.166 kb on + strand at 2727.166 kb on + strand at 2727.166 kb on + strand at 2727.166 kb on + strand at 2727.166 kb on + strand at 2727.166 kb on + strand at 2727.166 kb on + strand at 2727.166 kb on + strand at 2727.166 kb on + strand at 2727.166 kb on + strand at 2727.166 kb on + strand at 2727.167 kb on - strand at 2727.167 kb on - strand at 2727.167 kb on - strand at 2727.167 kb on - strand at 2727.167 kb on - strand at 2727.167 kb on - strand at 2727.167 kb on - strand at 2727.439 kb on + strand at 2727.439 kb on + strand at 2727.440 kb on - strand at 2727.440 kb on - strand at 2727.543 kb on + strand at 2727.543 kb on + strand at 2727.543 kb on + strand at 2727.543 kb on + strand at 2727.543 kb on + strand at 2727.543 kb on + strand at 2727.543 kb on + strand at 2727.544 kb on - strand at 2727.544 kb on - strand at 2727.544 kb on - strand at 2727.544 kb on - strand at 2727.640 kb on + strand at 2727.640 kb on + strand at 2727.640 kb on + strand at 2727.641 kb on - strand at 2727.726 kb on + strand, within MPMX19_02611 at 2727.726 kb on + strand, within MPMX19_02611 at 2727.726 kb on + strand, within MPMX19_02611 at 2727.726 kb on + strand, within MPMX19_02611 at 2727.726 kb on + strand, within MPMX19_02611 at 2727.726 kb on + strand, within MPMX19_02611 at 2727.727 kb on - strand, within MPMX19_02611 at 2727.727 kb on - strand, within MPMX19_02611 at 2727.727 kb on - strand, within MPMX19_02611 at 2727.727 kb on - strand, within MPMX19_02611 at 2727.727 kb on - strand, within MPMX19_02611 at 2727.727 kb on - strand, within MPMX19_02611 at 2727.727 kb on - strand, within MPMX19_02611 at 2727.727 kb on - strand, within MPMX19_02611 at 2727.864 kb on + strand, within MPMX19_02611 at 2727.901 kb on + strand, within MPMX19_02611 at 2727.901 kb on + strand, within MPMX19_02611 at 2727.902 kb on - strand, within MPMX19_02611 at 2727.902 kb on - strand, within MPMX19_02611 at 2727.902 kb on - strand, within MPMX19_02611 at 2728.207 kb on + strand at 2728.207 kb on + strand at 2728.208 kb on - strand at 2728.208 kb on - strand at 2728.208 kb on - strand at 2728.208 kb on - strand at 2728.316 kb on + strand at 2728.316 kb on + strand at 2728.317 kb on - strand at 2728.317 kb on - strand at 2728.317 kb on - strand at 2728.317 kb on - strand at 2728.317 kb on - strand at 2728.317 kb on - strand at 2728.367 kb on + strand at 2728.367 kb on + strand at 2728.414 kb on - strand, within MPMX19_02612 at 2728.669 kb on - strand, within MPMX19_02612 at 2728.826 kb on + strand at 2728.826 kb on + strand at 2728.826 kb on + strand at 2728.826 kb on + strand at 2728.826 kb on + strand at 2728.827 kb on - strand at 2728.827 kb on - strand at 2728.827 kb on - strand at 2728.827 kb on - strand at 2728.857 kb on + strand at 2729.011 kb on + strand, within MPMX19_02613 at 2729.012 kb on - strand, within MPMX19_02613 at 2729.012 kb on - strand, within MPMX19_02613 at 2729.012 kb on - strand, within MPMX19_02613 at 2729.012 kb on - strand, within MPMX19_02613 at 2729.107 kb on + strand, within MPMX19_02613 at 2729.108 kb on - strand, within MPMX19_02613
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 2,726,852 + MPMX19_02610 0.55 +0.3 2,726,853 - MPMX19_02610 0.56 +0.4 2,726,960 + -0.2 2,726,960 + -1.6 2,726,960 + -0.3 2,726,960 + +1.0 2,726,960 + -2.8 2,726,960 + -0.5 2,726,960 + -0.7 2,726,960 + -0.4 2,726,960 + +0.4 2,726,960 + -0.1 2,726,960 + -0.1 2,726,960 + +0.9 2,726,960 + -1.6 2,726,960 + +0.5 2,726,960 + +2.0 2,726,960 + -0.3 2,726,960 + -0.2 2,726,961 - +0.6 2,726,961 - +0.0 2,726,961 - -1.5 2,726,961 - -0.8 2,726,961 - -0.9 2,726,961 - -0.3 2,726,961 - +0.0 2,726,961 - +0.5 2,726,961 - -1.0 2,726,961 - -0.8 2,726,961 - -0.9 2,726,961 - -0.3 2,726,961 - -0.5 2,726,961 - -1.5 2,726,961 - -2.0 2,726,961 - -0.3 2,726,961 - -1.0 2,726,961 - -1.2 2,726,961 - -2.5 2,726,961 - +0.0 2,726,961 - -1.6 2,726,961 - -0.4 2,726,961 - +0.0 2,726,986 + -0.5 2,726,986 + +0.0 2,726,986 + -1.5 2,726,986 + +0.9 2,726,986 + -1.5 2,726,986 + +0.3 2,726,986 + +0.4 2,726,986 + +0.2 2,726,986 + +0.4 2,726,986 + +0.4 2,726,986 + +0.7 2,726,986 + -0.2 2,726,986 + +0.9 2,726,986 + +0.7 2,726,986 + +0.2 2,726,986 + -0.2 2,726,986 + +0.4 2,726,986 + +0.2 2,726,986 + -0.1 2,726,986 + +0.3 2,726,986 + +1.0 2,726,987 - +1.4 2,726,987 - +1.1 2,726,987 - -0.5 2,726,987 - -1.2 2,726,987 - +0.5 2,726,987 - +1.5 2,726,987 - -0.5 2,726,987 - -1.3 2,727,166 + +0.4 2,727,166 + -0.6 2,727,166 + +1.1 2,727,166 + -0.6 2,727,166 + +1.0 2,727,166 + -0.9 2,727,166 + +1.1 2,727,166 + -0.6 2,727,166 + +1.3 2,727,166 + -0.7 2,727,166 + -1.3 2,727,167 - +0.4 2,727,167 - -0.0 2,727,167 - -1.6 2,727,167 - +0.0 2,727,167 - -1.1 2,727,167 - -0.9 2,727,167 - -1.3 2,727,439 + -1.0 2,727,439 + +0.8 2,727,440 - -0.8 2,727,440 - +0.3 2,727,543 + -0.1 2,727,543 + +0.8 2,727,543 + +0.7 2,727,543 + -0.4 2,727,543 + -1.0 2,727,543 + +0.0 2,727,543 + +0.6 2,727,544 - -0.7 2,727,544 - +0.9 2,727,544 - -0.6 2,727,544 - -1.6 2,727,640 + -1.0 2,727,640 + -0.8 2,727,640 + -1.2 2,727,641 - -1.1 2,727,726 + MPMX19_02611 0.18 +0.2 2,727,726 + MPMX19_02611 0.18 -2.4 2,727,726 + MPMX19_02611 0.18 +1.5 2,727,726 + MPMX19_02611 0.18 -1.7 2,727,726 + MPMX19_02611 0.18 +0.3 2,727,726 + MPMX19_02611 0.18 -1.4 2,727,727 - MPMX19_02611 0.18 -0.8 2,727,727 - MPMX19_02611 0.18 -0.3 2,727,727 - MPMX19_02611 0.18 -1.3 2,727,727 - MPMX19_02611 0.18 -0.2 2,727,727 - MPMX19_02611 0.18 -2.1 2,727,727 - MPMX19_02611 0.18 +0.6 2,727,727 - MPMX19_02611 0.18 -2.1 2,727,727 - MPMX19_02611 0.18 -0.2 2,727,864 + MPMX19_02611 0.41 -1.7 2,727,901 + MPMX19_02611 0.48 +0.1 2,727,901 + MPMX19_02611 0.48 +0.1 2,727,902 - MPMX19_02611 0.48 -0.7 2,727,902 - MPMX19_02611 0.48 -1.0 2,727,902 - MPMX19_02611 0.48 +0.3 2,728,207 + -2.1 2,728,207 + -2.5 2,728,208 - -1.3 2,728,208 - +0.8 2,728,208 - -2.1 2,728,208 - +0.0 2,728,316 + -0.1 2,728,316 + -1.5 2,728,317 - -0.4 2,728,317 - -0.2 2,728,317 - -1.7 2,728,317 - -0.3 2,728,317 - -1.0 2,728,317 - +0.1 2,728,367 + +0.7 2,728,367 + +0.3 2,728,414 - MPMX19_02612 0.16 +3.6 2,728,669 - MPMX19_02612 0.73 -0.7 2,728,826 + -0.9 2,728,826 + -0.6 2,728,826 + -0.2 2,728,826 + -0.2 2,728,826 + -0.3 2,728,827 - -0.3 2,728,827 - +0.6 2,728,827 - +0.3 2,728,827 - +1.5 2,728,857 + +0.9 2,729,011 + MPMX19_02613 0.30 +1.4 2,729,012 - MPMX19_02613 0.30 +0.4 2,729,012 - MPMX19_02613 0.30 -0.8 2,729,012 - MPMX19_02613 0.30 +0.4 2,729,012 - MPMX19_02613 0.30 +0.4 2,729,107 + MPMX19_02613 0.70 +0.1 2,729,108 - MPMX19_02613 0.70 +1.1
Or see this region's nucleotide sequence