Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00023

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00022 and MPMX19_00023 are separated by 231 nucleotidesMPMX19_00023 and MPMX19_00024 are separated by 254 nucleotides MPMX19_00022: MPMX19_00022 - hypothetical protein, at 26,572 to 27,663 _00022 MPMX19_00023: MPMX19_00023 - Adenosylhomocysteinase, at 27,895 to 29,193 _00023 MPMX19_00024: MPMX19_00024 - 3-dehydro-bile acid delta(4,6)-reductase, at 29,448 to 30,671 _00024 Position (kb) 27 28 29 30Strain fitness (log2 ratio) -3 -2 -1 0 1at 27.236 kb on + strand, within MPMX19_00022at 27.236 kb on + strand, within MPMX19_00022at 27.236 kb on + strand, within MPMX19_00022at 27.236 kb on + strand, within MPMX19_00022at 27.237 kb on - strand, within MPMX19_00022at 27.278 kb on + strand, within MPMX19_00022at 27.278 kb on + strand, within MPMX19_00022at 27.278 kb on + strand, within MPMX19_00022at 27.278 kb on + strand, within MPMX19_00022at 27.278 kb on + strand, within MPMX19_00022at 27.278 kb on + strand, within MPMX19_00022at 27.278 kb on + strand, within MPMX19_00022at 27.278 kb on + strand, within MPMX19_00022at 27.278 kb on + strand, within MPMX19_00022at 27.278 kb on + strand, within MPMX19_00022at 27.279 kb on - strand, within MPMX19_00022at 27.279 kb on - strand, within MPMX19_00022at 27.279 kb on - strand, within MPMX19_00022at 27.279 kb on - strand, within MPMX19_00022at 27.279 kb on - strand, within MPMX19_00022at 27.279 kb on - strand, within MPMX19_00022at 27.279 kb on - strand, within MPMX19_00022at 27.279 kb on - strand, within MPMX19_00022at 27.279 kb on - strand, within MPMX19_00022at 27.279 kb on - strand, within MPMX19_00022at 27.279 kb on - strand, within MPMX19_00022at 27.279 kb on - strand, within MPMX19_00022at 27.279 kb on - strand, within MPMX19_00022at 27.279 kb on - strand, within MPMX19_00022at 27.374 kb on + strand, within MPMX19_00022at 27.374 kb on + strand, within MPMX19_00022at 27.375 kb on - strand, within MPMX19_00022at 27.375 kb on - strand, within MPMX19_00022at 27.401 kb on + strand, within MPMX19_00022at 27.401 kb on + strand, within MPMX19_00022at 27.401 kb on + strand, within MPMX19_00022at 27.401 kb on + strand, within MPMX19_00022at 27.401 kb on + strand, within MPMX19_00022at 27.401 kb on + strand, within MPMX19_00022at 27.402 kb on - strand, within MPMX19_00022at 27.402 kb on - strand, within MPMX19_00022at 27.402 kb on - strand, within MPMX19_00022at 27.402 kb on - strand, within MPMX19_00022at 27.402 kb on - strand, within MPMX19_00022at 27.402 kb on - strand, within MPMX19_00022at 27.402 kb on - strand, within MPMX19_00022at 27.402 kb on - strand, within MPMX19_00022at 27.402 kb on - strand, within MPMX19_00022at 27.402 kb on - strand, within MPMX19_00022at 27.402 kb on - strand, within MPMX19_00022at 27.428 kb on + strand, within MPMX19_00022at 27.428 kb on + strand, within MPMX19_00022at 27.429 kb on - strand, within MPMX19_00022at 27.554 kb on + strandat 27.554 kb on + strandat 27.555 kb on - strandat 27.555 kb on - strandat 27.652 kb on + strandat 27.652 kb on + strandat 27.652 kb on + strandat 27.652 kb on + strandat 27.652 kb on + strandat 27.653 kb on - strandat 27.653 kb on - strandat 27.653 kb on - strandat 27.653 kb on - strandat 27.674 kb on + strandat 27.674 kb on + strandat 27.674 kb on + strandat 27.674 kb on + strandat 27.674 kb on + strandat 27.675 kb on - strandat 27.675 kb on - strandat 27.695 kb on + strandat 27.696 kb on - strandat 27.761 kb on + strandat 27.761 kb on + strandat 27.761 kb on + strandat 27.762 kb on - strandat 27.762 kb on - strandat 27.767 kb on + strandat 27.768 kb on - strandat 27.773 kb on + strandat 27.774 kb on - strandat 27.801 kb on + strandat 27.801 kb on + strandat 27.801 kb on + strandat 27.801 kb on + strandat 27.801 kb on + strandat 27.801 kb on + strandat 29.191 kb on + strandat 29.191 kb on + strandat 29.191 kb on + strandat 29.191 kb on + strandat 29.191 kb on + strandat 29.191 kb on + strandat 29.192 kb on - strandat 29.192 kb on - strandat 29.192 kb on - strandat 29.207 kb on + strandat 29.207 kb on + strandat 29.207 kb on + strandat 29.207 kb on + strandat 29.208 kb on - strandat 29.536 kb on + strandat 29.536 kb on + strandat 29.536 kb on + strandat 29.536 kb on + strandat 29.536 kb on + strandat 29.536 kb on + strandat 29.537 kb on - strandat 29.537 kb on - strandat 29.537 kb on - strandat 29.537 kb on - strandat 29.537 kb on - strandat 29.537 kb on - strandat 29.944 kb on + strand, within MPMX19_00024at 29.944 kb on + strand, within MPMX19_00024at 29.944 kb on + strand, within MPMX19_00024at 29.945 kb on - strand, within MPMX19_00024at 29.945 kb on - strand, within MPMX19_00024at 29.945 kb on - strand, within MPMX19_00024at 29.945 kb on - strand, within MPMX19_00024at 29.945 kb on - strand, within MPMX19_00024at 29.945 kb on - strand, within MPMX19_00024at 30.016 kb on - strand, within MPMX19_00024

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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27,236 + MPMX19_00022 0.61 -1.8
27,236 + MPMX19_00022 0.61 +0.8
27,236 + MPMX19_00022 0.61 -0.3
27,236 + MPMX19_00022 0.61 -0.2
27,237 - MPMX19_00022 0.61 -0.9
27,278 + MPMX19_00022 0.65 +0.7
27,278 + MPMX19_00022 0.65 -0.9
27,278 + MPMX19_00022 0.65 -0.4
27,278 + MPMX19_00022 0.65 -0.1
27,278 + MPMX19_00022 0.65 -0.3
27,278 + MPMX19_00022 0.65 +0.2
27,278 + MPMX19_00022 0.65 -0.4
27,278 + MPMX19_00022 0.65 +0.9
27,278 + MPMX19_00022 0.65 -0.2
27,278 + MPMX19_00022 0.65 -0.3
27,279 - MPMX19_00022 0.65 +0.6
27,279 - MPMX19_00022 0.65 +0.7
27,279 - MPMX19_00022 0.65 +1.0
27,279 - MPMX19_00022 0.65 -0.8
27,279 - MPMX19_00022 0.65 -2.9
27,279 - MPMX19_00022 0.65 -0.7
27,279 - MPMX19_00022 0.65 -0.3
27,279 - MPMX19_00022 0.65 -1.1
27,279 - MPMX19_00022 0.65 -0.3
27,279 - MPMX19_00022 0.65 -0.6
27,279 - MPMX19_00022 0.65 -0.8
27,279 - MPMX19_00022 0.65 -0.3
27,279 - MPMX19_00022 0.65 +0.1
27,279 - MPMX19_00022 0.65 -1.0
27,374 + MPMX19_00022 0.73 -1.3
27,374 + MPMX19_00022 0.73 +0.8
27,375 - MPMX19_00022 0.74 -2.0
27,375 - MPMX19_00022 0.74 -2.9
27,401 + MPMX19_00022 0.76 +0.9
27,401 + MPMX19_00022 0.76 -0.5
27,401 + MPMX19_00022 0.76 +0.1
27,401 + MPMX19_00022 0.76 -2.0
27,401 + MPMX19_00022 0.76 -2.0
27,401 + MPMX19_00022 0.76 +0.6
27,402 - MPMX19_00022 0.76 -1.0
27,402 - MPMX19_00022 0.76 -0.3
27,402 - MPMX19_00022 0.76 -0.1
27,402 - MPMX19_00022 0.76 -0.0
27,402 - MPMX19_00022 0.76 -0.3
27,402 - MPMX19_00022 0.76 -0.1
27,402 - MPMX19_00022 0.76 +1.3
27,402 - MPMX19_00022 0.76 +0.4
27,402 - MPMX19_00022 0.76 -1.6
27,402 - MPMX19_00022 0.76 -2.4
27,402 - MPMX19_00022 0.76 +0.4
27,428 + MPMX19_00022 0.78 -1.7
27,428 + MPMX19_00022 0.78 -1.1
27,429 - MPMX19_00022 0.78 -1.6
27,554 + +0.3
27,554 + +1.0
27,555 - +0.4
27,555 - -0.6
27,652 + -0.1
27,652 + +0.6
27,652 + -0.0
27,652 + -1.9
27,652 + +0.1
27,653 - -2.1
27,653 - -0.6
27,653 - +0.7
27,653 - -2.1
27,674 + -0.4
27,674 + -1.4
27,674 + -0.9
27,674 + -0.3
27,674 + -0.4
27,675 - -0.7
27,675 - -0.2
27,695 + -0.9
27,696 - +0.1
27,761 + -0.8
27,761 + -0.9
27,761 + +1.0
27,762 - +0.9
27,762 - +1.4
27,767 + -0.8
27,768 - +0.6
27,773 + +0.4
27,774 - +0.1
27,801 + -0.2
27,801 + +0.7
27,801 + -1.7
27,801 + +1.4
27,801 + -1.3
27,801 + +0.3
29,191 + -1.5
29,191 + +0.9
29,191 + -1.9
29,191 + +0.3
29,191 + -0.1
29,191 + -2.7
29,192 - +0.9
29,192 - -0.6
29,192 - -0.2
29,207 + -1.1
29,207 + +1.1
29,207 + +0.3
29,207 + +0.4
29,208 - -0.4
29,536 + -0.4
29,536 + -2.5
29,536 + -0.6
29,536 + +0.2
29,536 + +0.7
29,536 + -2.2
29,537 - +0.4
29,537 - -0.8
29,537 - -1.3
29,537 - +0.6
29,537 - -0.8
29,537 - -0.7
29,944 + MPMX19_00024 0.41 -0.5
29,944 + MPMX19_00024 0.41 -0.9
29,944 + MPMX19_00024 0.41 -0.7
29,945 - MPMX19_00024 0.41 -0.6
29,945 - MPMX19_00024 0.41 -0.5
29,945 - MPMX19_00024 0.41 -0.5
29,945 - MPMX19_00024 0.41 +0.7
29,945 - MPMX19_00024 0.41 -0.9
29,945 - MPMX19_00024 0.41 +0.9
30,016 - MPMX19_00024 0.46 +0.2

Or see this region's nucleotide sequence