Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_13350

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnrdA and yhbQ are separated by 54 nucleotidesyhbQ and nrdB are separated by 145 nucleotides OKGIIK_13345: nrdA - ribonucleoside-diphosphate reductase subunit alpha, at 2,881,222 to 2,883,675 nrdA OKGIIK_13350: yhbQ - GIY-YIG nuclease, at 2,883,730 to 2,884,026 yhbQ OKGIIK_13355: nrdB - Ribonucleotide reductase beta subunit, ferritin-like domain, at 2,884,172 to 2,885,254 nrdB Position (kb) 2883 2884 2885Strain fitness (log2 ratio) -2 -1 0 1 2at 2883.749 kb on + strandat 2883.750 kb on - strandat 2883.968 kb on + strand, within yhbQat 2883.968 kb on + strand, within yhbQat 2883.969 kb on - strand, within yhbQat 2883.969 kb on - strand, within yhbQat 2883.969 kb on - strand, within yhbQat 2883.969 kb on - strand, within yhbQat 2884.001 kb on + strandat 2884.001 kb on + strandat 2884.002 kb on - strandat 2884.002 kb on - strandat 2884.026 kb on + strandat 2884.072 kb on + strandat 2884.072 kb on + strandat 2884.120 kb on + strandat 2884.120 kb on + strandat 2884.120 kb on + strandat 2884.120 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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2,883,749 + +0.4
2,883,750 - -1.6
2,883,968 + yhbQ OKGIIK_13350 0.80 +1.1
2,883,968 + yhbQ OKGIIK_13350 0.80 -0.1
2,883,969 - yhbQ OKGIIK_13350 0.80 -1.1
2,883,969 - yhbQ OKGIIK_13350 0.80 +0.1
2,883,969 - yhbQ OKGIIK_13350 0.80 +0.2
2,883,969 - yhbQ OKGIIK_13350 0.80 +2.5
2,884,001 + -0.9
2,884,001 + +0.1
2,884,002 - -1.7
2,884,002 - -2.1
2,884,026 + -2.3
2,884,072 + +0.8
2,884,072 + -0.8
2,884,120 + -0.8
2,884,120 + -0.8
2,884,120 + +1.3
2,884,120 + -0.3

Or see this region's nucleotide sequence