Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_12625

Experiment: no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOKGIIK_12615 and OKGIIK_12620 are separated by 82 nucleotidesOKGIIK_12620 and OKGIIK_12625 are separated by 11 nucleotidesOKGIIK_12625 and OKGIIK_12630 are separated by 129 nucleotidesOKGIIK_12630 and OKGIIK_12635 are separated by 67 nucleotides OKGIIK_12615: OKGIIK_12615 - DUF2845 domain-containing protein, at 2,719,878 to 2,720,189 _12615 OKGIIK_12620: OKGIIK_12620 - hypothetical protein, at 2,720,272 to 2,720,847 _12620 OKGIIK_12625: OKGIIK_12625 - DUF2383 domain-containing protein, at 2,720,859 to 2,721,305 _12625 OKGIIK_12630: OKGIIK_12630 - DUF2884 domain-containing protein, at 2,721,435 to 2,722,187 _12630 OKGIIK_12635: OKGIIK_12635 - hypothetical protein, at 2,722,255 to 2,722,728 _12635 Position (kb) 2720 2721 2722Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2719.880 kb on - strandat 2719.880 kb on - strandat 2720.300 kb on + strandat 2720.300 kb on + strandat 2720.300 kb on + strandat 2720.300 kb on + strandat 2720.300 kb on + strandat 2720.300 kb on + strandat 2720.301 kb on - strandat 2720.301 kb on - strandat 2720.301 kb on - strandat 2720.301 kb on - strandat 2720.301 kb on - strandat 2720.301 kb on - strandat 2720.301 kb on - strandat 2720.301 kb on - strandat 2720.301 kb on - strandat 2720.301 kb on - strandat 2720.301 kb on - strandat 2720.301 kb on - strandat 2720.301 kb on - strandat 2720.301 kb on - strandat 2720.301 kb on - strandat 2720.396 kb on + strand, within OKGIIK_12620at 2720.396 kb on + strand, within OKGIIK_12620at 2720.396 kb on + strand, within OKGIIK_12620at 2720.396 kb on + strand, within OKGIIK_12620at 2720.396 kb on + strand, within OKGIIK_12620at 2720.396 kb on + strand, within OKGIIK_12620at 2720.396 kb on + strand, within OKGIIK_12620at 2720.396 kb on + strand, within OKGIIK_12620at 2720.396 kb on + strand, within OKGIIK_12620at 2720.396 kb on + strand, within OKGIIK_12620at 2720.396 kb on + strand, within OKGIIK_12620at 2720.396 kb on + strand, within OKGIIK_12620at 2720.396 kb on + strand, within OKGIIK_12620at 2720.396 kb on + strand, within OKGIIK_12620at 2720.397 kb on - strand, within OKGIIK_12620at 2720.397 kb on - strand, within OKGIIK_12620at 2720.397 kb on - strand, within OKGIIK_12620at 2720.397 kb on - strand, within OKGIIK_12620at 2720.397 kb on - strand, within OKGIIK_12620at 2720.397 kb on - strand, within OKGIIK_12620at 2720.397 kb on - strand, within OKGIIK_12620at 2720.397 kb on - strand, within OKGIIK_12620at 2720.397 kb on - strand, within OKGIIK_12620at 2720.397 kb on - strand, within OKGIIK_12620at 2720.397 kb on - strand, within OKGIIK_12620at 2720.397 kb on - strand, within OKGIIK_12620at 2720.397 kb on - strand, within OKGIIK_12620at 2720.397 kb on - strand, within OKGIIK_12620at 2720.397 kb on - strand, within OKGIIK_12620at 2720.397 kb on - strand, within OKGIIK_12620at 2720.397 kb on - strand, within OKGIIK_12620at 2720.397 kb on - strand, within OKGIIK_12620at 2720.397 kb on - strand, within OKGIIK_12620at 2720.397 kb on - strand, within OKGIIK_12620at 2720.397 kb on - strand, within OKGIIK_12620at 2720.516 kb on + strand, within OKGIIK_12620at 2720.516 kb on + strand, within OKGIIK_12620at 2720.516 kb on + strand, within OKGIIK_12620at 2720.517 kb on - strand, within OKGIIK_12620at 2720.524 kb on + strand, within OKGIIK_12620at 2720.524 kb on + strand, within OKGIIK_12620at 2720.525 kb on - strand, within OKGIIK_12620at 2720.525 kb on - strand, within OKGIIK_12620at 2720.525 kb on - strand, within OKGIIK_12620at 2720.525 kb on - strand, within OKGIIK_12620at 2720.631 kb on - strand, within OKGIIK_12620at 2720.656 kb on + strand, within OKGIIK_12620at 2720.656 kb on + strand, within OKGIIK_12620at 2720.656 kb on + strand, within OKGIIK_12620at 2720.656 kb on + strand, within OKGIIK_12620at 2720.656 kb on + strand, within OKGIIK_12620at 2720.657 kb on - strand, within OKGIIK_12620at 2720.657 kb on - strand, within OKGIIK_12620at 2720.657 kb on - strand, within OKGIIK_12620at 2720.657 kb on - strand, within OKGIIK_12620at 2720.863 kb on + strandat 2720.863 kb on + strandat 2721.235 kb on + strand, within OKGIIK_12625at 2721.235 kb on + strand, within OKGIIK_12625at 2721.236 kb on - strand, within OKGIIK_12625at 2721.236 kb on - strand, within OKGIIK_12625at 2721.236 kb on - strand, within OKGIIK_12625at 2721.361 kb on + strandat 2721.361 kb on + strandat 2721.362 kb on - strandat 2721.362 kb on - strandat 2721.362 kb on - strandat 2721.373 kb on - strandat 2721.373 kb on - strandat 2721.981 kb on + strand, within OKGIIK_12630at 2722.017 kb on + strand, within OKGIIK_12630at 2722.017 kb on + strand, within OKGIIK_12630at 2722.017 kb on + strand, within OKGIIK_12630at 2722.017 kb on + strand, within OKGIIK_12630at 2722.017 kb on + strand, within OKGIIK_12630at 2722.017 kb on + strand, within OKGIIK_12630at 2722.017 kb on + strand, within OKGIIK_12630at 2722.017 kb on + strand, within OKGIIK_12630at 2722.018 kb on - strand, within OKGIIK_12630at 2722.018 kb on - strand, within OKGIIK_12630at 2722.018 kb on - strand, within OKGIIK_12630at 2722.018 kb on - strand, within OKGIIK_12630at 2722.018 kb on - strand, within OKGIIK_12630at 2722.087 kb on + strand, within OKGIIK_12630at 2722.087 kb on + strand, within OKGIIK_12630at 2722.087 kb on + strand, within OKGIIK_12630at 2722.087 kb on + strand, within OKGIIK_12630at 2722.087 kb on + strand, within OKGIIK_12630at 2722.087 kb on + strand, within OKGIIK_12630at 2722.087 kb on + strand, within OKGIIK_12630at 2722.088 kb on - strand, within OKGIIK_12630at 2722.088 kb on - strand, within OKGIIK_12630at 2722.088 kb on - strand, within OKGIIK_12630at 2722.088 kb on - strand, within OKGIIK_12630at 2722.088 kb on - strand, within OKGIIK_12630at 2722.088 kb on - strand, within OKGIIK_12630at 2722.088 kb on - strand, within OKGIIK_12630at 2722.088 kb on - strand, within OKGIIK_12630at 2722.088 kb on - strand, within OKGIIK_12630at 2722.088 kb on - strand, within OKGIIK_12630at 2722.088 kb on - strand, within OKGIIK_12630

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
remove
2,719,880 - -1.6
2,719,880 - -1.2
2,720,300 + -0.6
2,720,300 + -0.2
2,720,300 + +0.7
2,720,300 + -0.8
2,720,300 + -0.6
2,720,300 + -3.2
2,720,301 - +1.0
2,720,301 - +1.8
2,720,301 - -1.2
2,720,301 - +1.5
2,720,301 - -0.6
2,720,301 - +0.5
2,720,301 - -1.0
2,720,301 - +0.6
2,720,301 - +0.7
2,720,301 - -2.5
2,720,301 - -1.6
2,720,301 - -1.4
2,720,301 - -0.6
2,720,301 - +0.2
2,720,301 - -0.6
2,720,396 + OKGIIK_12620 0.22 -0.4
2,720,396 + OKGIIK_12620 0.22 -0.2
2,720,396 + OKGIIK_12620 0.22 +0.2
2,720,396 + OKGIIK_12620 0.22 +0.7
2,720,396 + OKGIIK_12620 0.22 +1.8
2,720,396 + OKGIIK_12620 0.22 +2.2
2,720,396 + OKGIIK_12620 0.22 -1.4
2,720,396 + OKGIIK_12620 0.22 -0.4
2,720,396 + OKGIIK_12620 0.22 -1.6
2,720,396 + OKGIIK_12620 0.22 -0.4
2,720,396 + OKGIIK_12620 0.22 -3.7
2,720,396 + OKGIIK_12620 0.22 -0.6
2,720,396 + OKGIIK_12620 0.22 -0.4
2,720,396 + OKGIIK_12620 0.22 -1.4
2,720,397 - OKGIIK_12620 0.22 -1.1
2,720,397 - OKGIIK_12620 0.22 +1.0
2,720,397 - OKGIIK_12620 0.22 -1.9
2,720,397 - OKGIIK_12620 0.22 -1.4
2,720,397 - OKGIIK_12620 0.22 +2.0
2,720,397 - OKGIIK_12620 0.22 -0.6
2,720,397 - OKGIIK_12620 0.22 -0.6
2,720,397 - OKGIIK_12620 0.22 -0.6
2,720,397 - OKGIIK_12620 0.22 -0.6
2,720,397 - OKGIIK_12620 0.22 -1.6
2,720,397 - OKGIIK_12620 0.22 -0.8
2,720,397 - OKGIIK_12620 0.22 -0.0
2,720,397 - OKGIIK_12620 0.22 +2.3
2,720,397 - OKGIIK_12620 0.22 -0.0
2,720,397 - OKGIIK_12620 0.22 -0.2
2,720,397 - OKGIIK_12620 0.22 -2.0
2,720,397 - OKGIIK_12620 0.22 -1.4
2,720,397 - OKGIIK_12620 0.22 -0.3
2,720,397 - OKGIIK_12620 0.22 -0.8
2,720,397 - OKGIIK_12620 0.22 -0.8
2,720,397 - OKGIIK_12620 0.22 -2.2
2,720,516 + OKGIIK_12620 0.42 -0.8
2,720,516 + OKGIIK_12620 0.42 -2.4
2,720,516 + OKGIIK_12620 0.42 -2.7
2,720,517 - OKGIIK_12620 0.43 -0.3
2,720,524 + OKGIIK_12620 0.44 +1.4
2,720,524 + OKGIIK_12620 0.44 -0.4
2,720,525 - OKGIIK_12620 0.44 -1.0
2,720,525 - OKGIIK_12620 0.44 -1.4
2,720,525 - OKGIIK_12620 0.44 -1.3
2,720,525 - OKGIIK_12620 0.44 +1.0
2,720,631 - OKGIIK_12620 0.62 -1.0
2,720,656 + OKGIIK_12620 0.67 +1.1
2,720,656 + OKGIIK_12620 0.67 -2.0
2,720,656 + OKGIIK_12620 0.67 -1.7
2,720,656 + OKGIIK_12620 0.67 -1.0
2,720,656 + OKGIIK_12620 0.67 -2.6
2,720,657 - OKGIIK_12620 0.67 -0.0
2,720,657 - OKGIIK_12620 0.67 -2.2
2,720,657 - OKGIIK_12620 0.67 +1.4
2,720,657 - OKGIIK_12620 0.67 -0.6
2,720,863 + +0.4
2,720,863 + -0.5
2,721,235 + OKGIIK_12625 0.84 +1.0
2,721,235 + OKGIIK_12625 0.84 -1.0
2,721,236 - OKGIIK_12625 0.84 -2.2
2,721,236 - OKGIIK_12625 0.84 -0.8
2,721,236 - OKGIIK_12625 0.84 -0.0
2,721,361 + -1.6
2,721,361 + -1.4
2,721,362 - -0.0
2,721,362 - -1.4
2,721,362 - -0.4
2,721,373 - -0.3
2,721,373 - -0.0
2,721,981 + OKGIIK_12630 0.73 -1.5
2,722,017 + OKGIIK_12630 0.77 +0.9
2,722,017 + OKGIIK_12630 0.77 -0.0
2,722,017 + OKGIIK_12630 0.77 -3.0
2,722,017 + OKGIIK_12630 0.77 -1.4
2,722,017 + OKGIIK_12630 0.77 -0.4
2,722,017 + OKGIIK_12630 0.77 +0.1
2,722,017 + OKGIIK_12630 0.77 +1.0
2,722,017 + OKGIIK_12630 0.77 +3.5
2,722,018 - OKGIIK_12630 0.77 -0.2
2,722,018 - OKGIIK_12630 0.77 +0.0
2,722,018 - OKGIIK_12630 0.77 -0.3
2,722,018 - OKGIIK_12630 0.77 +1.5
2,722,018 - OKGIIK_12630 0.77 -0.9
2,722,087 + OKGIIK_12630 0.87 +0.4
2,722,087 + OKGIIK_12630 0.87 +1.0
2,722,087 + OKGIIK_12630 0.87 +0.2
2,722,087 + OKGIIK_12630 0.87 -1.4
2,722,087 + OKGIIK_12630 0.87 -0.5
2,722,087 + OKGIIK_12630 0.87 -0.4
2,722,087 + OKGIIK_12630 0.87 -0.6
2,722,088 - OKGIIK_12630 0.87 +0.4
2,722,088 - OKGIIK_12630 0.87 -0.8
2,722,088 - OKGIIK_12630 0.87 -0.6
2,722,088 - OKGIIK_12630 0.87 -0.6
2,722,088 - OKGIIK_12630 0.87 -0.5
2,722,088 - OKGIIK_12630 0.87 +1.7
2,722,088 - OKGIIK_12630 0.87 -1.7
2,722,088 - OKGIIK_12630 0.87 -1.0
2,722,088 - OKGIIK_12630 0.87 -0.0
2,722,088 - OKGIIK_12630 0.87 -1.2
2,722,088 - OKGIIK_12630 0.87 -0.6

Or see this region's nucleotide sequence