Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Gly_trna and Tyr_trna are separated by 18 nucleotides Tyr_trna and yciA are separated by 93 nucleotides yciA and OKGIIK_10565 are separated by 140 nucleotides OKGIIK_10565 and pth are separated by 96 nucleotides pth and rplY are separated by 54 nucleotides
OKGIIK_10550: Gly_trna - tRNA-Gly, at 2,266,946 to 2,267,019
_trna
OKGIIK_10555: Tyr_trna - tRNA-Tyr, at 2,267,038 to 2,267,123
_trna
OKGIIK_10560: yciA - acyl-CoA thioesterase, at 2,267,217 to 2,267,705
yciA
OKGIIK_10565: OKGIIK_10565 - Ribosome-binding ATPase YchF, at 2,267,846 to 2,268,934
_10565
OKGIIK_10570: pth - aminoacyl-tRNA hydrolase, at 2,269,031 to 2,269,606
pth
OKGIIK_10575: rplY - 50S ribosomal protein L25/general stress protein Ctc, at 2,269,661 to 2,270,332
rplY
Position (kb)
2267
2268
2269 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2266.939 kb on - strand at 2266.939 kb on - strand at 2266.939 kb on - strand at 2266.939 kb on - strand at 2266.939 kb on - strand at 2266.939 kb on - strand at 2266.939 kb on - strand at 2267.292 kb on + strand, within yciA at 2267.293 kb on - strand, within yciA at 2267.293 kb on - strand, within yciA at 2267.293 kb on - strand, within yciA at 2267.293 kb on - strand, within yciA at 2267.293 kb on - strand, within yciA at 2267.293 kb on - strand, within yciA at 2267.293 kb on - strand, within yciA at 2267.293 kb on - strand, within yciA at 2267.560 kb on + strand, within yciA at 2267.560 kb on + strand, within yciA at 2267.560 kb on + strand, within yciA at 2267.560 kb on + strand, within yciA at 2267.560 kb on + strand, within yciA at 2267.560 kb on + strand, within yciA at 2267.560 kb on + strand, within yciA at 2267.560 kb on + strand, within yciA at 2267.560 kb on + strand, within yciA at 2267.561 kb on - strand, within yciA at 2267.561 kb on - strand, within yciA at 2267.561 kb on - strand, within yciA at 2267.561 kb on - strand, within yciA at 2267.561 kb on - strand, within yciA at 2267.590 kb on + strand, within yciA at 2267.696 kb on + strand at 2267.696 kb on + strand at 2267.697 kb on - strand at 2267.697 kb on - strand at 2267.743 kb on + strand at 2267.743 kb on + strand at 2267.743 kb on + strand at 2267.743 kb on + strand at 2267.743 kb on + strand at 2267.743 kb on + strand at 2267.743 kb on + strand at 2267.743 kb on + strand at 2267.743 kb on + strand at 2267.743 kb on + strand at 2267.743 kb on + strand at 2267.743 kb on + strand at 2267.743 kb on + strand at 2267.743 kb on + strand at 2267.744 kb on - strand at 2267.744 kb on - strand at 2267.744 kb on - strand at 2267.744 kb on - strand at 2267.744 kb on - strand at 2267.744 kb on - strand at 2267.744 kb on - strand at 2267.744 kb on - strand at 2267.744 kb on - strand at 2267.744 kb on - strand at 2267.744 kb on - strand at 2267.744 kb on - strand at 2267.744 kb on - strand at 2267.744 kb on - strand at 2267.744 kb on - strand at 2267.744 kb on - strand at 2267.744 kb on - strand at 2267.744 kb on - strand at 2267.744 kb on - strand at 2267.892 kb on + strand at 2267.892 kb on + strand at 2267.892 kb on + strand at 2267.892 kb on + strand at 2267.892 kb on + strand at 2267.892 kb on + strand at 2267.892 kb on + strand at 2267.892 kb on + strand at 2267.892 kb on + strand at 2267.893 kb on - strand at 2267.893 kb on - strand at 2267.893 kb on - strand at 2267.893 kb on - strand at 2267.893 kb on - strand at 2267.893 kb on - strand at 2267.893 kb on - strand at 2267.893 kb on - strand at 2267.893 kb on - strand at 2267.893 kb on - strand at 2267.893 kb on - strand at 2267.893 kb on - strand at 2267.949 kb on + strand at 2267.949 kb on + strand at 2267.950 kb on - strand at 2267.950 kb on - strand at 2267.950 kb on - strand at 2267.950 kb on - strand at 2267.950 kb on - strand at 2267.950 kb on - strand at 2268.093 kb on + strand, within OKGIIK_10565 at 2268.093 kb on + strand, within OKGIIK_10565 at 2268.093 kb on + strand, within OKGIIK_10565 at 2268.093 kb on + strand, within OKGIIK_10565 at 2268.093 kb on + strand, within OKGIIK_10565 at 2268.093 kb on + strand, within OKGIIK_10565 at 2268.093 kb on + strand, within OKGIIK_10565 at 2268.094 kb on - strand, within OKGIIK_10565 at 2268.094 kb on - strand, within OKGIIK_10565 at 2268.094 kb on - strand, within OKGIIK_10565 at 2268.118 kb on - strand, within OKGIIK_10565 at 2268.327 kb on + strand, within OKGIIK_10565 at 2268.327 kb on + strand, within OKGIIK_10565 at 2268.327 kb on + strand, within OKGIIK_10565 at 2268.327 kb on + strand, within OKGIIK_10565 at 2268.327 kb on + strand, within OKGIIK_10565 at 2268.327 kb on + strand, within OKGIIK_10565 at 2268.327 kb on + strand, within OKGIIK_10565 at 2268.327 kb on + strand, within OKGIIK_10565 at 2268.327 kb on + strand, within OKGIIK_10565 at 2268.327 kb on + strand, within OKGIIK_10565 at 2268.328 kb on - strand, within OKGIIK_10565 at 2268.328 kb on - strand, within OKGIIK_10565 at 2268.328 kb on - strand, within OKGIIK_10565 at 2268.328 kb on - strand, within OKGIIK_10565 at 2268.328 kb on - strand, within OKGIIK_10565 at 2268.328 kb on - strand, within OKGIIK_10565 at 2268.328 kb on - strand, within OKGIIK_10565 at 2268.328 kb on - strand, within OKGIIK_10565 at 2268.328 kb on - strand, within OKGIIK_10565 at 2268.328 kb on - strand, within OKGIIK_10565 at 2268.328 kb on - strand, within OKGIIK_10565 at 2268.328 kb on - strand, within OKGIIK_10565 at 2268.328 kb on - strand, within OKGIIK_10565 at 2268.328 kb on - strand, within OKGIIK_10565 at 2268.328 kb on - strand, within OKGIIK_10565 at 2268.328 kb on - strand, within OKGIIK_10565 at 2268.656 kb on - strand, within OKGIIK_10565 at 2268.656 kb on - strand, within OKGIIK_10565 at 2268.990 kb on - strand at 2268.991 kb on + strand at 2268.991 kb on + strand at 2268.991 kb on + strand at 2268.991 kb on + strand at 2268.991 kb on + strand at 2268.991 kb on + strand at 2268.991 kb on + strand at 2268.992 kb on - strand at 2268.992 kb on - strand at 2268.992 kb on - strand at 2268.992 kb on - strand at 2268.997 kb on + strand at 2268.997 kb on + strand at 2268.998 kb on - strand at 2268.998 kb on - strand at 2268.998 kb on - strand at 2268.998 kb on - strand at 2268.998 kb on - strand at 2269.032 kb on + strand at 2269.032 kb on + strand at 2269.032 kb on + strand at 2269.032 kb on + strand at 2269.039 kb on + strand at 2269.039 kb on + strand at 2269.039 kb on + strand at 2269.039 kb on + strand at 2269.040 kb on - strand at 2269.040 kb on - strand at 2269.040 kb on - strand at 2269.040 kb on - strand at 2269.040 kb on - strand at 2269.040 kb on - strand at 2269.040 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 2,266,939 - -0.5 2,266,939 - -0.9 2,266,939 - -1.2 2,266,939 - +0.4 2,266,939 - -0.4 2,266,939 - -0.5 2,266,939 - -1.1 2,267,292 + yciA OKGIIK_10560 0.15 +1.1 2,267,293 - yciA OKGIIK_10560 0.16 +0.5 2,267,293 - yciA OKGIIK_10560 0.16 -2.2 2,267,293 - yciA OKGIIK_10560 0.16 -2.3 2,267,293 - yciA OKGIIK_10560 0.16 +0.3 2,267,293 - yciA OKGIIK_10560 0.16 +1.7 2,267,293 - yciA OKGIIK_10560 0.16 -1.6 2,267,293 - yciA OKGIIK_10560 0.16 +0.8 2,267,293 - yciA OKGIIK_10560 0.16 -0.3 2,267,560 + yciA OKGIIK_10560 0.70 +4.3 2,267,560 + yciA OKGIIK_10560 0.70 -1.9 2,267,560 + yciA OKGIIK_10560 0.70 +0.3 2,267,560 + yciA OKGIIK_10560 0.70 -0.2 2,267,560 + yciA OKGIIK_10560 0.70 +1.1 2,267,560 + yciA OKGIIK_10560 0.70 -0.9 2,267,560 + yciA OKGIIK_10560 0.70 -0.4 2,267,560 + yciA OKGIIK_10560 0.70 -0.5 2,267,560 + yciA OKGIIK_10560 0.70 +0.5 2,267,561 - yciA OKGIIK_10560 0.70 +0.6 2,267,561 - yciA OKGIIK_10560 0.70 +0.5 2,267,561 - yciA OKGIIK_10560 0.70 -1.4 2,267,561 - yciA OKGIIK_10560 0.70 -1.5 2,267,561 - yciA OKGIIK_10560 0.70 -0.4 2,267,590 + yciA OKGIIK_10560 0.76 +1.1 2,267,696 + -2.4 2,267,696 + +1.1 2,267,697 - -0.8 2,267,697 - +0.4 2,267,743 + +1.1 2,267,743 + +1.1 2,267,743 + -0.5 2,267,743 + -0.3 2,267,743 + +1.4 2,267,743 + +1.1 2,267,743 + -0.9 2,267,743 + -1.2 2,267,743 + -0.2 2,267,743 + -1.5 2,267,743 + +0.3 2,267,743 + +1.1 2,267,743 + -1.3 2,267,743 + -0.1 2,267,744 - -0.9 2,267,744 - +1.1 2,267,744 - -1.7 2,267,744 - -1.7 2,267,744 - -0.0 2,267,744 - +1.1 2,267,744 - -2.1 2,267,744 - +0.4 2,267,744 - -1.5 2,267,744 - -1.9 2,267,744 - -1.5 2,267,744 - -0.0 2,267,744 - -1.5 2,267,744 - -0.8 2,267,744 - -1.5 2,267,744 - -0.9 2,267,744 - -2.3 2,267,744 - +0.7 2,267,744 - -1.2 2,267,892 + +0.7 2,267,892 + +1.1 2,267,892 + +2.1 2,267,892 + +0.1 2,267,892 + +0.4 2,267,892 + -1.9 2,267,892 + -1.1 2,267,892 + -0.8 2,267,892 + +0.4 2,267,893 - +0.6 2,267,893 - -0.5 2,267,893 - -1.5 2,267,893 - -2.2 2,267,893 - -0.5 2,267,893 - -0.6 2,267,893 - -0.1 2,267,893 - -1.2 2,267,893 - -1.5 2,267,893 - -1.9 2,267,893 - -2.1 2,267,893 - -2.1 2,267,949 + -2.2 2,267,949 + +0.1 2,267,950 - -1.5 2,267,950 - +0.4 2,267,950 - -0.4 2,267,950 - -0.9 2,267,950 - -1.3 2,267,950 - +1.1 2,268,093 + OKGIIK_10565 0.23 -1.7 2,268,093 + OKGIIK_10565 0.23 -1.5 2,268,093 + OKGIIK_10565 0.23 -0.9 2,268,093 + OKGIIK_10565 0.23 -0.5 2,268,093 + OKGIIK_10565 0.23 -1.5 2,268,093 + OKGIIK_10565 0.23 -2.1 2,268,093 + OKGIIK_10565 0.23 +0.5 2,268,094 - OKGIIK_10565 0.23 -0.9 2,268,094 - OKGIIK_10565 0.23 -0.2 2,268,094 - OKGIIK_10565 0.23 -0.9 2,268,118 - OKGIIK_10565 0.25 +0.1 2,268,327 + OKGIIK_10565 0.44 -1.5 2,268,327 + OKGIIK_10565 0.44 -0.5 2,268,327 + OKGIIK_10565 0.44 -1.7 2,268,327 + OKGIIK_10565 0.44 -0.2 2,268,327 + OKGIIK_10565 0.44 -1.1 2,268,327 + OKGIIK_10565 0.44 +1.5 2,268,327 + OKGIIK_10565 0.44 -2.1 2,268,327 + OKGIIK_10565 0.44 -1.5 2,268,327 + OKGIIK_10565 0.44 +0.1 2,268,327 + OKGIIK_10565 0.44 -0.8 2,268,328 - OKGIIK_10565 0.44 -0.4 2,268,328 - OKGIIK_10565 0.44 -1.5 2,268,328 - OKGIIK_10565 0.44 -1.2 2,268,328 - OKGIIK_10565 0.44 -0.3 2,268,328 - OKGIIK_10565 0.44 -0.5 2,268,328 - OKGIIK_10565 0.44 +0.7 2,268,328 - OKGIIK_10565 0.44 +0.1 2,268,328 - OKGIIK_10565 0.44 -0.5 2,268,328 - OKGIIK_10565 0.44 -2.4 2,268,328 - OKGIIK_10565 0.44 -1.1 2,268,328 - OKGIIK_10565 0.44 +0.1 2,268,328 - OKGIIK_10565 0.44 -0.9 2,268,328 - OKGIIK_10565 0.44 -1.2 2,268,328 - OKGIIK_10565 0.44 -2.6 2,268,328 - OKGIIK_10565 0.44 -1.9 2,268,328 - OKGIIK_10565 0.44 -1.5 2,268,656 - OKGIIK_10565 0.74 -1.2 2,268,656 - OKGIIK_10565 0.74 -2.1 2,268,990 - -0.9 2,268,991 + +0.1 2,268,991 + -1.2 2,268,991 + -1.7 2,268,991 + -0.5 2,268,991 + -1.5 2,268,991 + -2.4 2,268,991 + -0.3 2,268,992 - +0.8 2,268,992 - -1.7 2,268,992 - -0.3 2,268,992 - +0.6 2,268,997 + -0.6 2,268,997 + -2.2 2,268,998 - +0.8 2,268,998 - -1.1 2,268,998 - +1.1 2,268,998 - -1.2 2,268,998 - -1.5 2,269,032 + +0.2 2,269,032 + -0.3 2,269,032 + -1.0 2,269,032 + -1.5 2,269,039 + -0.5 2,269,039 + +1.1 2,269,039 + -2.2 2,269,039 + -1.1 2,269,040 - -0.5 2,269,040 - -0.5 2,269,040 - +0.1 2,269,040 - -2.8 2,269,040 - -0.5 2,269,040 - -1.9 2,269,040 - -1.5
Or see this region's nucleotide sequence